Literature DB >> 21588684

N-(4-Meth-oxy-phen-yl)-N'-(5-nitro-1,3-thia-zol-2-yl)urea.

Alan J Lough, Justin W Hicks, John F Valliant, Alan A Wilson, Neil Vasdev.   

Abstract

The title compound, C(11)H(10)N(4)O(4)S, is a derivative of N-(4-meth-oxy-benz-yl)-N'-(5-nitro-1,3-thia-zol-2-yl)urea (AR-A014418), a known glycogen synthase kinase 3β (GSK-3β) inhibitor. All non-H atoms in the mol-ecule are essentially coplanar, with an r.m.s. deviation of 0.045 Å and a maximum deviation of 0.115 (2) Å for the carbonyl O atom. In the crystal structure, mol-ecules are linked via N-H⋯O hydrogen bonds into one-dimensional chains along [101].

Entities:  

Year:  2010        PMID: 21588684      PMCID: PMC3008116          DOI: 10.1107/S1600536810032186

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on the preparation and activity of AR-A014418, see: Bhat et al. (2003 ▶); Inestrosa et al. (2006 ▶). For the radiolabelling procedure of AR-A014418 with carbon-11, see: Vasdev et al. (2005 ▶). For the crystal structure of AR-A014418, see: Vasdev et al. (2007 ▶).

Experimental

Crystal data

C11H10N4O4S M = 294.29 Monoclinic, a = 6.8740 (3) Å b = 12.5840 (7) Å c = 14.6861 (5) Å β = 101.622 (3)° V = 1244.34 (10) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 150 K 0.28 × 0.24 × 0.22 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1995 ▶) T min = 0.718, T max = 0.948 8106 measured reflections 2825 independent reflections 1979 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.145 S = 1.07 2825 reflections 190 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.51 e Å−3 Data collection: COLLECT (Nonius, 2002 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810032186/su2205sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810032186/su2205Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H10N4O4SF(000) = 608
Mr = 294.29Dx = 1.571 Mg m3
Monoclinic, P21/nMelting point: 454 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 6.8740 (3) ÅCell parameters from 3592 reflections
b = 12.5840 (7) Åθ = 2.6–27.5°
c = 14.6861 (5) ŵ = 0.28 mm1
β = 101.622 (3)°T = 150 K
V = 1244.34 (10) Å3Block, red
Z = 40.28 × 0.24 × 0.22 mm
Nonius KappaCCD diffractometer2825 independent reflections
Radiation source: fine-focus sealed tube1979 reflections with I > 2σ(I)
graphiteRint = 0.053
Detector resolution: 9 pixels mm-1θmax = 27.5°, θmin = 2.8°
φ scans and ω scans with κ offsetsh = −8→8
Absorption correction: multi-scan (SORTAV; Blessing, 1995)k = −14→16
Tmin = 0.718, Tmax = 0.948l = −17→19
8106 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0755P)2 + 0.3053P] where P = (Fo2 + 2Fc2)/3
2825 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.51 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expr ession of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.12900 (8)0.68571 (5)0.41433 (3)0.0246 (2)
O10.2254 (2)0.48461 (14)0.47569 (10)0.0306 (4)
O20.5006 (3)0.00530 (13)0.62455 (11)0.0340 (4)
O3−0.0126 (3)0.97318 (14)0.33409 (11)0.0347 (4)
O40.0063 (3)0.82488 (15)0.25900 (11)0.0367 (5)
N10.2026 (3)0.79137 (16)0.57084 (12)0.0277 (5)
N20.2668 (3)0.61085 (16)0.58904 (13)0.0268 (5)
H2N0.327 (4)0.627 (2)0.6449 (19)0.042 (8)*
N30.3514 (3)0.44014 (16)0.62860 (13)0.0253 (5)
H3N0.380 (4)0.466 (2)0.6845 (19)0.037 (8)*
N40.0257 (3)0.87648 (16)0.33258 (13)0.0270 (5)
C10.0930 (3)0.82155 (19)0.41566 (14)0.0232 (5)
C20.1399 (3)0.8632 (2)0.50308 (15)0.0267 (5)
H2A0.12920.93690.51530.032*
C30.2033 (3)0.69504 (18)0.53334 (15)0.0224 (5)
C40.2790 (3)0.50759 (19)0.55815 (15)0.0243 (5)
C50.3832 (3)0.32879 (18)0.62462 (15)0.0223 (5)
C60.3583 (3)0.2717 (2)0.54193 (15)0.0245 (5)
H6A0.31530.30640.48390.029*
C70.3970 (3)0.1640 (2)0.54544 (15)0.0258 (5)
H7A0.37910.12450.48920.031*
C80.4620 (3)0.11186 (19)0.63008 (15)0.0253 (5)
C90.4842 (4)0.1688 (2)0.71214 (16)0.0281 (6)
H9A0.52650.13420.77020.034*
C100.4439 (4)0.2773 (2)0.70889 (16)0.0277 (5)
H10A0.45830.31640.76510.033*
C110.5519 (4)−0.0525 (2)0.70992 (17)0.0360 (6)
H11A0.5715−0.12760.69650.054*
H11B0.4446−0.04600.74450.054*
H11C0.6749−0.02360.74720.054*
U11U22U33U12U13U23
S10.0269 (3)0.0260 (4)0.0198 (3)0.0001 (2)0.0024 (2)−0.0017 (2)
O10.0405 (10)0.0273 (10)0.0225 (9)0.0016 (8)0.0028 (7)−0.0024 (7)
O20.0482 (11)0.0242 (9)0.0304 (9)0.0047 (8)0.0097 (8)0.0018 (7)
O30.0418 (11)0.0279 (10)0.0335 (10)0.0046 (8)0.0057 (8)0.0080 (8)
O40.0450 (11)0.0437 (12)0.0193 (8)0.0073 (9)0.0015 (7)−0.0019 (8)
N10.0368 (12)0.0251 (11)0.0214 (10)0.0020 (9)0.0059 (8)−0.0009 (8)
N20.0352 (12)0.0240 (11)0.0205 (10)0.0011 (9)0.0040 (8)−0.0033 (9)
N30.0315 (11)0.0238 (11)0.0204 (10)0.0003 (9)0.0048 (8)−0.0014 (9)
N40.0239 (11)0.0318 (12)0.0250 (10)0.0008 (9)0.0041 (8)0.0044 (9)
C10.0226 (12)0.0249 (13)0.0223 (11)0.0005 (10)0.0049 (9)0.0036 (10)
C20.0310 (13)0.0242 (13)0.0246 (12)0.0003 (10)0.0046 (9)−0.0005 (10)
C30.0241 (12)0.0231 (13)0.0206 (11)−0.0022 (9)0.0063 (8)−0.0015 (9)
C40.0243 (12)0.0251 (13)0.0247 (12)−0.0007 (10)0.0079 (9)−0.0009 (10)
C50.0206 (11)0.0247 (13)0.0226 (11)−0.0003 (9)0.0070 (8)0.0002 (10)
C60.0233 (12)0.0285 (14)0.0219 (11)0.0006 (10)0.0051 (9)0.0007 (10)
C70.0253 (12)0.0293 (14)0.0233 (11)−0.0025 (10)0.0063 (9)−0.0030 (10)
C80.0257 (12)0.0214 (12)0.0309 (12)0.0006 (10)0.0105 (9)0.0002 (10)
C90.0310 (13)0.0314 (14)0.0231 (11)0.0006 (11)0.0087 (9)0.0044 (10)
C100.0338 (14)0.0273 (13)0.0235 (12)0.0006 (11)0.0097 (10)−0.0020 (10)
C110.0477 (16)0.0261 (14)0.0345 (14)0.0045 (12)0.0089 (11)0.0074 (11)
S1—C31.723 (2)C1—C21.364 (3)
S1—C11.728 (2)C2—H2A0.9500
O1—C41.227 (3)C5—C101.385 (3)
O2—C81.373 (3)C5—C61.391 (3)
O2—C111.431 (3)C6—C71.381 (3)
O3—N41.246 (3)C6—H6A0.9500
O4—N41.245 (2)C7—C81.397 (3)
N1—C31.332 (3)C7—H7A0.9500
N1—C21.349 (3)C8—C91.384 (3)
N2—C31.356 (3)C9—C101.391 (3)
N2—C41.384 (3)C9—H9A0.9500
N2—H2N0.86 (3)C10—H10A0.9500
N3—C41.353 (3)C11—H11A0.9800
N3—C51.421 (3)C11—H11B0.9800
N3—H3N0.87 (3)C11—H11C0.9800
N4—C11.398 (3)
C3—S1—C186.27 (11)C10—C5—C6120.0 (2)
C8—O2—C11117.49 (19)C10—C5—N3116.5 (2)
C3—N1—C2109.40 (18)C6—C5—N3123.5 (2)
C3—N2—C4124.68 (19)C7—C6—C5119.0 (2)
C3—N2—H2N115.2 (19)C7—C6—H6A120.5
C4—N2—H2N118.6 (19)C5—C6—H6A120.5
C4—N3—C5128.5 (2)C6—C7—C8121.3 (2)
C4—N3—H3N117.8 (18)C6—C7—H7A119.4
C5—N3—H3N113.6 (18)C8—C7—H7A119.4
O4—N4—O3122.61 (19)O2—C8—C9124.7 (2)
O4—N4—C1117.3 (2)O2—C8—C7115.9 (2)
O3—N4—C1120.09 (19)C9—C8—C7119.4 (2)
C2—C1—N4127.3 (2)C8—C9—C10119.5 (2)
C2—C1—S1112.58 (17)C8—C9—H9A120.3
N4—C1—S1120.16 (17)C10—C9—H9A120.3
N1—C2—C1114.6 (2)C5—C10—C9120.8 (2)
N1—C2—H2A122.7C5—C10—H10A119.6
C1—C2—H2A122.7C9—C10—H10A119.6
N1—C3—N2119.29 (19)O2—C11—H11A109.5
N1—C3—S1117.15 (17)O2—C11—H11B109.5
N2—C3—S1123.53 (17)H11A—C11—H11B109.5
O1—C4—N3126.7 (2)O2—C11—H11C109.5
O1—C4—N2121.2 (2)H11A—C11—H11C109.5
N3—C4—N2112.05 (19)H11B—C11—H11C109.5
D—H···AD—HH···AD···AD—H···A
N2—H2N···O4i0.86 (3)1.97 (3)2.817 (3)168 (3)
N3—H3N···O3i0.87 (3)2.30 (3)3.168 (2)174 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N⋯O4i0.86 (3)1.97 (3)2.817 (3)168 (3)
N3—H3N⋯O3i0.87 (3)2.30 (3)3.168 (2)174 (2)

Symmetry code: (i) .

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5.  Structure validation in chemical crystallography.

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