Literature DB >> 21588644

(11-Methyl-pyrido[2,3-b][1,4]benzo-diazepin-6-yl)(phen-yl)methanone.

Fuqiang Shi1, Long Zhang, Jin-Feng Wang, Ya-Feng Li.   

Abstract

In the title compound, C(20)H(15)N(3)O, the diazepine ring adopts a boat conformation. The dihedral angle between pyridine and benzene rings is 55.2 (1)°. The benzoyl phenyl ring forms dihedral angles of 49.4 (1) and 75.9 (1)°, respectively, with the pyridine and benzene rings. In the crystal, mol-ecules are linked into centrosymmetric dimers by pairs of C-H⋯N hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588644      PMCID: PMC3008030          DOI: 10.1107/S1600536810030564

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to pyridobenzodiazepine derivatives, see: Eberlein et al. (1987 ▶); Horton et al. (2003 ▶); Shi et al. (2008 ▶, 2010 ▶); Tahtaoui et al. (2004 ▶). For a related structure, see: Spirlet et al. (2003 ▶).

Experimental

Crystal data

C20H15N3O M = 313.35 Monoclinic, a = 8.4442 (17) Å b = 16.503 (3) Å c = 11.682 (2) Å β = 98.14 (3)° V = 1611.6 (6) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.37 × 0.30 × 0.19 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.389, T max = 0.431 14767 measured reflections 3587 independent reflections 2492 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.131 S = 1.05 3587 reflections 217 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.16 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2000 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810030564/ci5138sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030564/ci5138Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H15N3OF(000) = 656
Mr = 313.35Dx = 1.291 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2000 reflections
a = 8.4442 (17) Åθ = 3.0–27.5°
b = 16.503 (3) ŵ = 0.08 mm1
c = 11.682 (2) ÅT = 293 K
β = 98.14 (3)°Block, yellow
V = 1611.6 (6) Å30.37 × 0.30 × 0.19 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer3587 independent reflections
Radiation source: fine-focus sealed tube2492 reflections with I > 2σ(I)
graphiteRint = 0.048
Detector resolution: 10.00 pixels mm-1θmax = 27.5°, θmin = 3.0°
ω scansh = −10→9
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −21→21
Tmin = 0.389, Tmax = 0.431l = −14→15
14767 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0594P)2 + 0.2193P] where P = (Fo2 + 2Fc2)/3
3587 reflections(Δ/σ)max = 0.001
217 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.84497 (15)0.36871 (8)−0.05524 (17)0.0774 (5)
N20.66756 (14)0.13174 (8)0.03808 (12)0.0394 (3)
N30.99137 (15)0.19569 (8)0.04732 (13)0.0432 (3)
C11.3716 (2)0.31549 (11)−0.12859 (17)0.0529 (5)
H11.44110.2799−0.15800.063*
C21.4173 (2)0.39435 (11)−0.10549 (16)0.0497 (4)
H21.51760.4119−0.11920.060*
C31.3153 (2)0.44719 (11)−0.06219 (16)0.0500 (5)
H31.34680.5004−0.04570.060*
C41.16610 (19)0.42134 (10)−0.04322 (16)0.0464 (4)
H41.09700.4575−0.01460.056*
C51.11770 (18)0.34200 (9)−0.06626 (14)0.0387 (4)
C61.2226 (2)0.28871 (10)−0.10835 (16)0.0472 (4)
H61.19300.2350−0.12300.057*
C70.9509 (2)0.31859 (10)−0.05454 (17)0.0468 (4)
C80.90799 (18)0.23004 (9)−0.03891 (15)0.0402 (4)
C90.5167 (2)0.11410 (12)0.08085 (17)0.0526 (5)
H9A0.43390.14830.04210.079*
H9B0.52840.12410.16260.079*
H9C0.48870.05830.06600.079*
C100.9020 (2)−0.02679 (11)0.18587 (17)0.0571 (5)
H100.8833−0.07550.22170.069*
C111.0573 (2)−0.00296 (11)0.18578 (16)0.0536 (5)
H111.1418−0.03570.21770.064*
C121.0848 (2)0.07088 (11)0.13706 (15)0.0478 (4)
H121.18900.08970.13900.057*
C130.95740 (19)0.11717 (9)0.08517 (14)0.0391 (4)
C140.80223 (18)0.08588 (9)0.08663 (13)0.0376 (4)
N10.77531 (18)0.01626 (8)0.13702 (13)0.0494 (4)
C150.53710 (19)0.11522 (10)−0.16328 (16)0.0447 (4)
H150.45940.0820−0.13900.054*
C160.77505 (18)0.19642 (9)−0.12099 (14)0.0383 (4)
C170.65890 (17)0.14649 (9)−0.08261 (14)0.0358 (3)
C180.6450 (2)0.18248 (12)−0.31775 (16)0.0563 (5)
H180.64060.1941−0.39600.068*
C190.5310 (2)0.13338 (11)−0.27957 (16)0.0530 (5)
H190.44890.1122−0.33260.064*
C200.7655 (2)0.21400 (11)−0.23854 (16)0.0497 (4)
H200.84190.2476−0.26390.060*
U11U22U33U12U13U23
O10.0463 (7)0.0440 (8)0.1469 (16)0.0030 (6)0.0313 (8)0.0024 (8)
N20.0350 (7)0.0437 (8)0.0418 (7)−0.0032 (5)0.0136 (6)0.0033 (6)
N30.0388 (7)0.0397 (8)0.0519 (9)−0.0071 (6)0.0095 (6)−0.0011 (6)
C10.0422 (9)0.0514 (11)0.0686 (12)0.0050 (8)0.0196 (9)0.0014 (9)
C20.0360 (9)0.0570 (11)0.0557 (11)−0.0089 (7)0.0053 (8)0.0049 (8)
C30.0440 (9)0.0414 (9)0.0628 (12)−0.0123 (7)0.0009 (8)−0.0029 (8)
C40.0409 (9)0.0368 (9)0.0616 (11)0.0001 (7)0.0076 (8)−0.0049 (8)
C50.0356 (8)0.0331 (8)0.0482 (9)−0.0025 (6)0.0086 (7)0.0025 (7)
C60.0478 (9)0.0337 (9)0.0626 (11)−0.0027 (7)0.0171 (8)−0.0018 (8)
C70.0408 (9)0.0385 (9)0.0631 (11)−0.0020 (7)0.0143 (8)0.0009 (8)
C80.0360 (8)0.0366 (8)0.0513 (10)−0.0042 (6)0.0175 (7)−0.0004 (7)
C90.0435 (9)0.0603 (12)0.0586 (11)−0.0028 (8)0.0231 (9)0.0047 (9)
C100.0689 (13)0.0437 (10)0.0566 (11)−0.0028 (9)0.0016 (10)0.0092 (8)
C110.0584 (11)0.0482 (10)0.0516 (11)0.0088 (8)−0.0018 (9)−0.0011 (8)
C120.0415 (9)0.0511 (10)0.0498 (10)0.0009 (7)0.0027 (8)−0.0041 (8)
C130.0405 (8)0.0392 (9)0.0384 (8)−0.0045 (6)0.0088 (7)−0.0039 (7)
C140.0424 (9)0.0367 (8)0.0346 (8)−0.0035 (6)0.0088 (7)−0.0019 (6)
N10.0536 (9)0.0425 (8)0.0520 (9)−0.0076 (6)0.0064 (7)0.0090 (7)
C150.0399 (9)0.0382 (9)0.0556 (11)−0.0039 (7)0.0056 (8)−0.0008 (7)
C160.0383 (8)0.0357 (8)0.0432 (9)−0.0006 (6)0.0132 (7)0.0016 (7)
C170.0361 (8)0.0312 (8)0.0414 (9)0.0015 (6)0.0099 (7)−0.0003 (6)
C180.0690 (12)0.0573 (12)0.0423 (10)0.0052 (9)0.0075 (9)0.0054 (8)
C190.0570 (11)0.0507 (11)0.0477 (10)0.0012 (8)−0.0047 (9)−0.0041 (8)
C200.0555 (10)0.0461 (10)0.0498 (11)−0.0017 (8)0.0156 (9)0.0083 (8)
O1—C71.218 (2)C9—H9B0.96
N2—C141.416 (2)C9—H9C0.96
N2—C171.422 (2)C10—N11.342 (2)
N2—C91.462 (2)C10—C111.369 (3)
N3—C81.277 (2)C10—H100.93
N3—C131.412 (2)C11—C121.379 (3)
C1—C21.373 (2)C11—H110.93
C1—C61.385 (2)C12—C131.387 (2)
C1—H10.93C12—H120.93
C2—C31.372 (3)C13—C141.411 (2)
C2—H20.93C14—N11.325 (2)
C3—C41.377 (2)C15—C191.385 (3)
C3—H30.93C15—C171.392 (2)
C4—C51.387 (2)C15—H150.93
C4—H40.93C16—C201.395 (2)
C5—C61.387 (2)C16—C171.402 (2)
C5—C71.485 (2)C18—C201.377 (3)
C6—H60.93C18—C191.380 (3)
C7—C81.523 (2)C18—H180.93
C8—C161.477 (2)C19—H190.93
C9—H9A0.96C20—H200.93
C14—N2—C17114.46 (13)N1—C10—C11123.60 (17)
C14—N2—C9116.49 (13)N1—C10—H10118.2
C17—N2—C9116.60 (13)C11—C10—H10118.2
C8—N3—C13122.74 (13)C10—C11—C12118.14 (16)
C2—C1—C6120.38 (17)C10—C11—H11120.9
C2—C1—H1119.8C12—C11—H11120.9
C6—C1—H1119.8C11—C12—C13120.11 (16)
C3—C2—C1120.07 (16)C11—C12—H12119.9
C3—C2—H2120.0C13—C12—H12119.9
C1—C2—H2120.0C12—C13—C14117.22 (15)
C2—C3—C4119.92 (16)C12—C13—N3117.58 (14)
C2—C3—H3120.0C14—C13—N3124.75 (14)
C4—C3—H3120.0N1—C14—C13122.73 (15)
C3—C4—C5120.82 (16)N1—C14—N2117.57 (14)
C3—C4—H4119.6C13—C14—N2119.61 (14)
C5—C4—H4119.6C14—N1—C10118.11 (15)
C4—C5—C6118.82 (15)C19—C15—C17120.35 (16)
C4—C5—C7119.02 (15)C19—C15—H15119.8
C6—C5—C7121.96 (15)C17—C15—H15119.8
C1—C6—C5119.96 (16)C20—C16—C17119.45 (15)
C1—C6—H6120.0C20—C16—C8119.57 (15)
C5—C6—H6120.0C17—C16—C8120.98 (14)
O1—C7—C5121.87 (15)C15—C17—C16118.99 (15)
O1—C7—C8117.75 (15)C15—C17—N2122.48 (14)
C5—C7—C8120.38 (14)C16—C17—N2118.51 (14)
N3—C8—C16128.95 (14)C20—C18—C19119.19 (17)
N3—C8—C7113.99 (14)C20—C18—H18120.4
C16—C8—C7117.03 (14)C19—C18—H18120.4
N2—C9—H9A109.5C18—C19—C15120.88 (17)
N2—C9—H9B109.5C18—C19—H19119.6
H9A—C9—H9B109.5C15—C19—H19119.6
N2—C9—H9C109.5C18—C20—C16121.15 (17)
H9A—C9—H9C109.5C18—C20—H20119.4
H9B—C9—H9C109.5C16—C20—H20119.4
D—H···AD—HH···AD···AD—H···A
C15—H15···N1i0.932.563.463 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15⋯N1i0.932.563.463 (2)163

Symmetry code: (i) .

  5 in total

Review 1.  The combinatorial synthesis of bicyclic privileged structures or privileged substructures.

Authors:  Douglas A Horton; Gregory T Bourne; Mark L Smythe
Journal:  Chem Rev       Date:  2003-03       Impact factor: 60.622

2.  Method development for a pyridobenzodiazepine library with multiple diversification points.

Authors:  Fuqiang Shi; Xianxiu Xu; Lianyou Zheng; Qun Dang; Xu Bai
Journal:  J Comb Chem       Date:  2008-02-09

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Tricyclic compounds as selective antimuscarinics. 1. Structural requirements for selectivity toward the muscarinic acetylcholine receptor in a series of pirenzepine and imipramine analogues.

Authors:  W G Eberlein; G Trummlitz; W W Engel; G Schmidt; H Pelzer; N Mayer
Journal:  J Med Chem       Date:  1987-08       Impact factor: 7.446

5.  Fluorescent pirenzepine derivatives as potential bitopic ligands of the human M1 muscarinic receptor.

Authors:  Chouaib Tahtaoui; Isabelle Parrot; Philippe Klotz; Fabrice Guillier; Jean-Luc Galzi; Marcel Hibert; Brigitte Ilien
Journal:  J Med Chem       Date:  2004-08-12       Impact factor: 7.446

  5 in total

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