Literature DB >> 21588631

N-(3-Methyl-phen-yl)quinoxalin-2-amine monohydrate.

Azila Idris1, Zanariah Abdullah, Azahar Ariffin, Zainal A Fairuz, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The quinoxaline system in the title hydrate, C(15)H(13)N(3)·H(2)O, is roughly planar, the r.m.s. deviation for the 18 non-H atoms being 0.188 Å; this conformation features a short intra-molecular C-H⋯N(pyrazine) inter-action. In the crystal, the amine H atom forms an N-H⋯O hydrogen bond to the water mol-ecule, which in turn forms two O-H⋯N hydrogen bonds to the pyrazine N atoms of different organic mol-ecules. These inter-actions lead to supra-molecular arrays in the bc plane that are two mol-ecules thick; additional π-π inter-actions stabilize the layers [ring centroid-centroid distance = 3.5923 (7) Å]. The layers stack along the a-axis direction via C-H⋯π contacts.

Entities:  

Year:  2010        PMID: 21588631      PMCID: PMC3007995          DOI: 10.1107/S1600536810031260

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Fairuz et al. (2010 ▶). For background to the fluorescence properties of compounds related to the title compound, see: Kawai et al. (2001 ▶); Abdullah (2005 ▶).

Experimental

Crystal data

C15H13N3·H2O M = 253.30 Monoclinic, a = 10.9002 (8) Å b = 11.1048 (8) Å c = 11.1715 (8) Å β = 106.780 (1)° V = 1294.67 (16) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.30 × 0.20 × 0.05 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.942, T max = 1.000 12521 measured reflections 3100 independent reflections 2608 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.110 S = 1.02 3100 reflections 185 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810031260/hb5601sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810031260/hb5601Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13N3·H2OF(000) = 536
Mr = 253.30Dx = 1.299 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4286 reflections
a = 10.9002 (8) Åθ = 2.7–28.1°
b = 11.1048 (8) ŵ = 0.08 mm1
c = 11.1715 (8) ÅT = 100 K
β = 106.780 (1)°Prism, colourless
V = 1294.67 (16) Å30.30 × 0.20 × 0.05 mm
Z = 4
Bruker SMART APEX CCD diffractometer3100 independent reflections
Radiation source: fine-focus sealed tube2608 reflections with I > 2σ(I)
graphiteRint = 0.028
ω scansθmax = 27.5°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −14→14
Tmin = 0.942, Tmax = 1.000k = −14→14
12521 measured reflectionsl = −13→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0605P)2 + 0.3508P] where P = (Fo2 + 2Fc2)/3
3100 reflections(Δ/σ)max < 0.001
185 parametersΔρmax = 0.24 e Å3
3 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1W0.13500 (8)0.90644 (8)0.33421 (8)0.0223 (2)
N10.23584 (9)0.74212 (8)0.54040 (9)0.0164 (2)
N20.22297 (8)0.54565 (8)0.61373 (8)0.0155 (2)
N30.09733 (9)0.48107 (8)0.36216 (9)0.0173 (2)
C10.31138 (10)0.80081 (10)0.64828 (10)0.0160 (2)
C20.32032 (11)0.92624 (10)0.63975 (11)0.0197 (2)
H20.27190.96730.56680.024*
C30.40005 (11)0.99008 (11)0.73821 (12)0.0229 (3)
H30.40621.07510.73230.027*
C40.47106 (11)0.93112 (11)0.84546 (11)0.0221 (3)
H40.52670.97580.91170.027*
C50.46125 (10)0.80690 (11)0.85650 (10)0.0190 (2)
C60.38116 (10)0.74173 (10)0.75738 (10)0.0171 (2)
H60.37410.65690.76410.021*
C70.53811 (11)0.74244 (12)0.97319 (11)0.0241 (3)
H7A0.52890.78481.04710.036*
H7B0.62860.74100.97550.036*
H7C0.50660.65970.97270.036*
C80.20156 (10)0.62408 (10)0.52164 (10)0.0148 (2)
C90.13809 (10)0.58960 (10)0.39371 (10)0.0165 (2)
H90.12580.64900.33010.020*
C100.11971 (10)0.39634 (10)0.45706 (10)0.0158 (2)
C110.07801 (10)0.27676 (10)0.42863 (11)0.0197 (2)
H11A0.03440.25490.34490.024*
C120.10028 (11)0.19203 (10)0.52154 (12)0.0221 (3)
H12A0.07200.11150.50210.027*
C130.16493 (11)0.22376 (10)0.64566 (11)0.0216 (2)
H130.18040.16430.70950.026*
C140.20597 (11)0.34018 (10)0.67553 (11)0.0194 (2)
H140.24950.36060.75970.023*
C150.18364 (10)0.42907 (10)0.58167 (10)0.0155 (2)
H1n0.2046 (14)0.7886 (12)0.4763 (11)0.028 (4)*
H1w0.1780 (15)0.9131 (16)0.2821 (14)0.042 (5)*
H2w0.0595 (11)0.9256 (17)0.2944 (16)0.052 (5)*
U11U22U33U12U13U23
O1W0.0230 (4)0.0262 (5)0.0170 (4)0.0023 (3)0.0046 (3)0.0060 (3)
N10.0191 (4)0.0137 (4)0.0140 (4)−0.0006 (3)0.0010 (3)0.0017 (3)
N20.0175 (4)0.0142 (4)0.0144 (4)0.0003 (3)0.0040 (3)−0.0004 (3)
N30.0180 (4)0.0180 (5)0.0153 (5)−0.0011 (3)0.0042 (3)−0.0015 (4)
C10.0149 (5)0.0165 (5)0.0170 (5)−0.0009 (4)0.0053 (4)−0.0021 (4)
C20.0209 (5)0.0169 (5)0.0212 (6)−0.0005 (4)0.0059 (4)−0.0002 (4)
C30.0238 (6)0.0177 (5)0.0275 (6)−0.0040 (4)0.0080 (5)−0.0048 (5)
C40.0191 (5)0.0254 (6)0.0218 (6)−0.0052 (4)0.0058 (4)−0.0082 (5)
C50.0159 (5)0.0253 (6)0.0162 (5)−0.0014 (4)0.0056 (4)−0.0022 (4)
C60.0167 (5)0.0178 (5)0.0171 (5)−0.0012 (4)0.0052 (4)−0.0004 (4)
C70.0211 (6)0.0328 (7)0.0165 (6)−0.0019 (5)0.0022 (4)−0.0013 (5)
C80.0135 (5)0.0152 (5)0.0156 (5)0.0008 (4)0.0039 (4)−0.0011 (4)
C90.0175 (5)0.0169 (5)0.0145 (5)0.0000 (4)0.0034 (4)0.0016 (4)
C100.0149 (5)0.0158 (5)0.0175 (5)0.0004 (4)0.0061 (4)−0.0007 (4)
C110.0192 (5)0.0181 (5)0.0223 (6)−0.0024 (4)0.0068 (4)−0.0044 (4)
C120.0240 (6)0.0146 (5)0.0305 (6)−0.0022 (4)0.0120 (5)−0.0021 (5)
C130.0265 (6)0.0166 (5)0.0248 (6)0.0028 (4)0.0125 (5)0.0049 (4)
C140.0234 (5)0.0178 (5)0.0182 (5)0.0025 (4)0.0080 (4)0.0007 (4)
C150.0161 (5)0.0150 (5)0.0167 (5)0.0009 (4)0.0065 (4)−0.0006 (4)
O1W—H1w0.849 (9)C5—C71.5110 (16)
O1W—H2w0.842 (9)C6—H60.9500
N1—C81.3625 (14)C7—H7A0.9800
N1—C11.4080 (13)C7—H7B0.9800
N1—H1n0.869 (9)C7—H7C0.9800
N2—C81.3164 (14)C8—C91.4480 (15)
N2—C151.3781 (14)C9—H90.9500
N3—C91.2977 (14)C10—C111.4098 (15)
N3—C101.3855 (14)C10—C151.4126 (15)
C1—C61.3998 (15)C11—C121.3697 (17)
C1—C21.4015 (15)C11—H11A0.9500
C2—C31.3840 (16)C12—C131.4069 (17)
C2—H20.9500C12—H12A0.9500
C3—C41.3885 (17)C13—C141.3772 (16)
C3—H30.9500C13—H130.9500
C4—C51.3918 (17)C14—C151.4092 (15)
C4—H40.9500C14—H140.9500
C5—C61.3978 (15)
H1w—O1W—H2w105.3 (18)C5—C7—H7C109.5
C8—N1—C1130.07 (9)H7A—C7—H7C109.5
C8—N1—H1n114.8 (10)H7B—C7—H7C109.5
C1—N1—H1n115.1 (10)N2—C8—N1122.51 (10)
C8—N2—C15116.54 (9)N2—C8—C9121.52 (10)
C9—N3—C10116.87 (9)N1—C8—C9115.97 (9)
C6—C1—C2119.61 (10)N3—C9—C8122.84 (10)
C6—C1—N1124.39 (10)N3—C9—H9118.6
C2—C1—N1115.90 (10)C8—C9—H9118.6
C3—C2—C1119.67 (11)N3—C10—C11119.55 (10)
C3—C2—H2120.2N3—C10—C15120.48 (10)
C1—C2—H2120.2C11—C10—C15119.98 (10)
C2—C3—C4120.66 (11)C12—C11—C10120.08 (11)
C2—C3—H3119.7C12—C11—H11A120.0
C4—C3—H3119.7C10—C11—H11A120.0
C3—C4—C5120.39 (10)C11—C12—C13120.24 (10)
C3—C4—H4119.8C11—C12—H12A119.9
C5—C4—H4119.8C13—C12—H12A119.9
C4—C5—C6119.30 (10)C14—C13—C12120.61 (11)
C4—C5—C7120.55 (10)C14—C13—H13119.7
C6—C5—C7120.14 (11)C12—C13—H13119.7
C5—C6—C1120.34 (10)C13—C14—C15120.20 (11)
C5—C6—H6119.8C13—C14—H14119.9
C1—C6—H6119.8C15—C14—H14119.9
C5—C7—H7A109.5N2—C15—C14119.39 (10)
C5—C7—H7B109.5N2—C15—C10121.72 (10)
H7A—C7—H7B109.5C14—C15—C10118.89 (10)
C8—N1—C1—C68.48 (18)N2—C8—C9—N30.87 (17)
C8—N1—C1—C2−175.06 (11)N1—C8—C9—N3−178.34 (10)
C6—C1—C2—C31.34 (16)C9—N3—C10—C11−179.84 (10)
N1—C1—C2—C3−175.31 (10)C9—N3—C10—C150.27 (15)
C1—C2—C3—C4−0.14 (17)N3—C10—C11—C12179.60 (10)
C2—C3—C4—C5−1.21 (18)C15—C10—C11—C12−0.51 (16)
C3—C4—C5—C61.34 (17)C10—C11—C12—C13−0.07 (17)
C3—C4—C5—C7−179.84 (10)C11—C12—C13—C140.36 (18)
C4—C5—C6—C1−0.13 (16)C12—C13—C14—C15−0.06 (17)
C7—C5—C6—C1−178.95 (10)C8—N2—C15—C14178.78 (10)
C2—C1—C6—C5−1.20 (16)C8—N2—C15—C10−2.12 (15)
N1—C1—C6—C5175.14 (10)C13—C14—C15—N2178.62 (10)
C15—N2—C8—N1−179.88 (9)C13—C14—C15—C10−0.51 (16)
C15—N2—C8—C90.96 (15)N3—C10—C15—N21.58 (16)
C1—N1—C8—N29.51 (18)C11—C10—C15—N2−178.32 (10)
C1—N1—C8—C9−171.29 (10)N3—C10—C15—C14−179.31 (10)
C10—N3—C9—C8−1.45 (16)C11—C10—C15—C140.79 (16)
Cg1 is the centroid of the C10–C15 ring.
D—H···AD—HH···AD···AD—H···A
C6—H6···N20.952.342.9482 (14)122
N1—H1n···O1w0.87 (1)2.03 (1)2.8951 (12)176.(2)
O1w—H1w···N2i0.85 (1)2.13 (1)2.9382 (13)160.(2)
O1w—H2w···N3ii0.84 (1)2.15 (1)2.9504 (12)158.(2)
C7—H7b···Cg1iii0.982.713.6532 (14)161
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C10–C15 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯N20.952.342.9482 (14)122
N1—H1n⋯O1w0.87 (1)2.03 (1)2.8951 (12)176 (2)
O1w—H1w⋯N2i0.85 (1)2.13 (1)2.9382 (13)160 (2)
O1w—H2w⋯N3ii0.84 (1)2.15 (1)2.9504 (12)158 (2)
C7—H7b⋯Cg1iii0.982.713.6532 (14)161

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(4-Chloro-phen-yl)-4-methyl-pyridin-2-amine.

Authors:  Zainal A Fairuz; Zaharah Aiyub; Zanariah Abdullah; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31
  2 in total

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