| Literature DB >> 21588631 |
Azila Idris1, Zanariah Abdullah, Azahar Ariffin, Zainal A Fairuz, Seik Weng Ng, Edward R T Tiekink.
Abstract
The quinoxaline system in the title hydrate, C(15)H(13)N(3)·H(2)O, is roughly planar, the r.m.s. deviation for the 18 non-H atoms being 0.188 Å; this conformation features a short intra-molecular C-H⋯N(pyrazine) inter-action. In the crystal, the amine H atom forms an N-H⋯O hydrogen bond to the water mol-ecule, which in turn forms two O-H⋯N hydrogen bonds to the pyrazine N atoms of different organic mol-ecules. These inter-actions lead to supra-molecular arrays in the bc plane that are two mol-ecules thick; additional π-π inter-actions stabilize the layers [ring centroid-centroid distance = 3.5923 (7) Å]. The layers stack along the a-axis direction via C-H⋯π contacts.Entities:
Year: 2010 PMID: 21588631 PMCID: PMC3007995 DOI: 10.1107/S1600536810031260
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H13N3·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4286 reflections |
| θ = 2.7–28.1° | |
| µ = 0.08 mm−1 | |
| β = 106.780 (1)° | Prism, colourless |
| 0.30 × 0.20 × 0.05 mm | |
| Bruker SMART APEX CCD diffractometer | 3100 independent reflections |
| Radiation source: fine-focus sealed tube | 2608 reflections with |
| graphite | |
| ω scans | θmax = 27.5°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 12521 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3100 reflections | (Δ/σ)max < 0.001 |
| 185 parameters | Δρmax = 0.24 e Å−3 |
| 3 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1W | 0.13500 (8) | 0.90644 (8) | 0.33421 (8) | 0.0223 (2) | |
| N1 | 0.23584 (9) | 0.74212 (8) | 0.54040 (9) | 0.0164 (2) | |
| N2 | 0.22297 (8) | 0.54565 (8) | 0.61373 (8) | 0.0155 (2) | |
| N3 | 0.09733 (9) | 0.48107 (8) | 0.36216 (9) | 0.0173 (2) | |
| C1 | 0.31138 (10) | 0.80081 (10) | 0.64828 (10) | 0.0160 (2) | |
| C2 | 0.32032 (11) | 0.92624 (10) | 0.63975 (11) | 0.0197 (2) | |
| H2 | 0.2719 | 0.9673 | 0.5668 | 0.024* | |
| C3 | 0.40005 (11) | 0.99008 (11) | 0.73821 (12) | 0.0229 (3) | |
| H3 | 0.4062 | 1.0751 | 0.7323 | 0.027* | |
| C4 | 0.47106 (11) | 0.93112 (11) | 0.84546 (11) | 0.0221 (3) | |
| H4 | 0.5267 | 0.9758 | 0.9117 | 0.027* | |
| C5 | 0.46125 (10) | 0.80690 (11) | 0.85650 (10) | 0.0190 (2) | |
| C6 | 0.38116 (10) | 0.74173 (10) | 0.75738 (10) | 0.0171 (2) | |
| H6 | 0.3741 | 0.6569 | 0.7641 | 0.021* | |
| C7 | 0.53811 (11) | 0.74244 (12) | 0.97319 (11) | 0.0241 (3) | |
| H7A | 0.5289 | 0.7848 | 1.0471 | 0.036* | |
| H7B | 0.6286 | 0.7410 | 0.9755 | 0.036* | |
| H7C | 0.5066 | 0.6597 | 0.9727 | 0.036* | |
| C8 | 0.20156 (10) | 0.62408 (10) | 0.52164 (10) | 0.0148 (2) | |
| C9 | 0.13809 (10) | 0.58960 (10) | 0.39371 (10) | 0.0165 (2) | |
| H9 | 0.1258 | 0.6490 | 0.3301 | 0.020* | |
| C10 | 0.11971 (10) | 0.39634 (10) | 0.45706 (10) | 0.0158 (2) | |
| C11 | 0.07801 (10) | 0.27676 (10) | 0.42863 (11) | 0.0197 (2) | |
| H11A | 0.0344 | 0.2549 | 0.3449 | 0.024* | |
| C12 | 0.10028 (11) | 0.19203 (10) | 0.52154 (12) | 0.0221 (3) | |
| H12A | 0.0720 | 0.1115 | 0.5021 | 0.027* | |
| C13 | 0.16493 (11) | 0.22376 (10) | 0.64566 (11) | 0.0216 (2) | |
| H13 | 0.1804 | 0.1643 | 0.7095 | 0.026* | |
| C14 | 0.20597 (11) | 0.34018 (10) | 0.67553 (11) | 0.0194 (2) | |
| H14 | 0.2495 | 0.3606 | 0.7597 | 0.023* | |
| C15 | 0.18364 (10) | 0.42907 (10) | 0.58167 (10) | 0.0155 (2) | |
| H1n | 0.2046 (14) | 0.7886 (12) | 0.4763 (11) | 0.028 (4)* | |
| H1w | 0.1780 (15) | 0.9131 (16) | 0.2821 (14) | 0.042 (5)* | |
| H2w | 0.0595 (11) | 0.9256 (17) | 0.2944 (16) | 0.052 (5)* |
| O1W | 0.0230 (4) | 0.0262 (5) | 0.0170 (4) | 0.0023 (3) | 0.0046 (3) | 0.0060 (3) |
| N1 | 0.0191 (4) | 0.0137 (4) | 0.0140 (4) | −0.0006 (3) | 0.0010 (3) | 0.0017 (3) |
| N2 | 0.0175 (4) | 0.0142 (4) | 0.0144 (4) | 0.0003 (3) | 0.0040 (3) | −0.0004 (3) |
| N3 | 0.0180 (4) | 0.0180 (5) | 0.0153 (5) | −0.0011 (3) | 0.0042 (3) | −0.0015 (4) |
| C1 | 0.0149 (5) | 0.0165 (5) | 0.0170 (5) | −0.0009 (4) | 0.0053 (4) | −0.0021 (4) |
| C2 | 0.0209 (5) | 0.0169 (5) | 0.0212 (6) | −0.0005 (4) | 0.0059 (4) | −0.0002 (4) |
| C3 | 0.0238 (6) | 0.0177 (5) | 0.0275 (6) | −0.0040 (4) | 0.0080 (5) | −0.0048 (5) |
| C4 | 0.0191 (5) | 0.0254 (6) | 0.0218 (6) | −0.0052 (4) | 0.0058 (4) | −0.0082 (5) |
| C5 | 0.0159 (5) | 0.0253 (6) | 0.0162 (5) | −0.0014 (4) | 0.0056 (4) | −0.0022 (4) |
| C6 | 0.0167 (5) | 0.0178 (5) | 0.0171 (5) | −0.0012 (4) | 0.0052 (4) | −0.0004 (4) |
| C7 | 0.0211 (6) | 0.0328 (7) | 0.0165 (6) | −0.0019 (5) | 0.0022 (4) | −0.0013 (5) |
| C8 | 0.0135 (5) | 0.0152 (5) | 0.0156 (5) | 0.0008 (4) | 0.0039 (4) | −0.0011 (4) |
| C9 | 0.0175 (5) | 0.0169 (5) | 0.0145 (5) | 0.0000 (4) | 0.0034 (4) | 0.0016 (4) |
| C10 | 0.0149 (5) | 0.0158 (5) | 0.0175 (5) | 0.0004 (4) | 0.0061 (4) | −0.0007 (4) |
| C11 | 0.0192 (5) | 0.0181 (5) | 0.0223 (6) | −0.0024 (4) | 0.0068 (4) | −0.0044 (4) |
| C12 | 0.0240 (6) | 0.0146 (5) | 0.0305 (6) | −0.0022 (4) | 0.0120 (5) | −0.0021 (5) |
| C13 | 0.0265 (6) | 0.0166 (5) | 0.0248 (6) | 0.0028 (4) | 0.0125 (5) | 0.0049 (4) |
| C14 | 0.0234 (5) | 0.0178 (5) | 0.0182 (5) | 0.0025 (4) | 0.0080 (4) | 0.0007 (4) |
| C15 | 0.0161 (5) | 0.0150 (5) | 0.0167 (5) | 0.0009 (4) | 0.0065 (4) | −0.0006 (4) |
| O1W—H1w | 0.849 (9) | C5—C7 | 1.5110 (16) |
| O1W—H2w | 0.842 (9) | C6—H6 | 0.9500 |
| N1—C8 | 1.3625 (14) | C7—H7A | 0.9800 |
| N1—C1 | 1.4080 (13) | C7—H7B | 0.9800 |
| N1—H1n | 0.869 (9) | C7—H7C | 0.9800 |
| N2—C8 | 1.3164 (14) | C8—C9 | 1.4480 (15) |
| N2—C15 | 1.3781 (14) | C9—H9 | 0.9500 |
| N3—C9 | 1.2977 (14) | C10—C11 | 1.4098 (15) |
| N3—C10 | 1.3855 (14) | C10—C15 | 1.4126 (15) |
| C1—C6 | 1.3998 (15) | C11—C12 | 1.3697 (17) |
| C1—C2 | 1.4015 (15) | C11—H11A | 0.9500 |
| C2—C3 | 1.3840 (16) | C12—C13 | 1.4069 (17) |
| C2—H2 | 0.9500 | C12—H12A | 0.9500 |
| C3—C4 | 1.3885 (17) | C13—C14 | 1.3772 (16) |
| C3—H3 | 0.9500 | C13—H13 | 0.9500 |
| C4—C5 | 1.3918 (17) | C14—C15 | 1.4092 (15) |
| C4—H4 | 0.9500 | C14—H14 | 0.9500 |
| C5—C6 | 1.3978 (15) | ||
| H1w—O1W—H2w | 105.3 (18) | C5—C7—H7C | 109.5 |
| C8—N1—C1 | 130.07 (9) | H7A—C7—H7C | 109.5 |
| C8—N1—H1n | 114.8 (10) | H7B—C7—H7C | 109.5 |
| C1—N1—H1n | 115.1 (10) | N2—C8—N1 | 122.51 (10) |
| C8—N2—C15 | 116.54 (9) | N2—C8—C9 | 121.52 (10) |
| C9—N3—C10 | 116.87 (9) | N1—C8—C9 | 115.97 (9) |
| C6—C1—C2 | 119.61 (10) | N3—C9—C8 | 122.84 (10) |
| C6—C1—N1 | 124.39 (10) | N3—C9—H9 | 118.6 |
| C2—C1—N1 | 115.90 (10) | C8—C9—H9 | 118.6 |
| C3—C2—C1 | 119.67 (11) | N3—C10—C11 | 119.55 (10) |
| C3—C2—H2 | 120.2 | N3—C10—C15 | 120.48 (10) |
| C1—C2—H2 | 120.2 | C11—C10—C15 | 119.98 (10) |
| C2—C3—C4 | 120.66 (11) | C12—C11—C10 | 120.08 (11) |
| C2—C3—H3 | 119.7 | C12—C11—H11A | 120.0 |
| C4—C3—H3 | 119.7 | C10—C11—H11A | 120.0 |
| C3—C4—C5 | 120.39 (10) | C11—C12—C13 | 120.24 (10) |
| C3—C4—H4 | 119.8 | C11—C12—H12A | 119.9 |
| C5—C4—H4 | 119.8 | C13—C12—H12A | 119.9 |
| C4—C5—C6 | 119.30 (10) | C14—C13—C12 | 120.61 (11) |
| C4—C5—C7 | 120.55 (10) | C14—C13—H13 | 119.7 |
| C6—C5—C7 | 120.14 (11) | C12—C13—H13 | 119.7 |
| C5—C6—C1 | 120.34 (10) | C13—C14—C15 | 120.20 (11) |
| C5—C6—H6 | 119.8 | C13—C14—H14 | 119.9 |
| C1—C6—H6 | 119.8 | C15—C14—H14 | 119.9 |
| C5—C7—H7A | 109.5 | N2—C15—C14 | 119.39 (10) |
| C5—C7—H7B | 109.5 | N2—C15—C10 | 121.72 (10) |
| H7A—C7—H7B | 109.5 | C14—C15—C10 | 118.89 (10) |
| C8—N1—C1—C6 | 8.48 (18) | N2—C8—C9—N3 | 0.87 (17) |
| C8—N1—C1—C2 | −175.06 (11) | N1—C8—C9—N3 | −178.34 (10) |
| C6—C1—C2—C3 | 1.34 (16) | C9—N3—C10—C11 | −179.84 (10) |
| N1—C1—C2—C3 | −175.31 (10) | C9—N3—C10—C15 | 0.27 (15) |
| C1—C2—C3—C4 | −0.14 (17) | N3—C10—C11—C12 | 179.60 (10) |
| C2—C3—C4—C5 | −1.21 (18) | C15—C10—C11—C12 | −0.51 (16) |
| C3—C4—C5—C6 | 1.34 (17) | C10—C11—C12—C13 | −0.07 (17) |
| C3—C4—C5—C7 | −179.84 (10) | C11—C12—C13—C14 | 0.36 (18) |
| C4—C5—C6—C1 | −0.13 (16) | C12—C13—C14—C15 | −0.06 (17) |
| C7—C5—C6—C1 | −178.95 (10) | C8—N2—C15—C14 | 178.78 (10) |
| C2—C1—C6—C5 | −1.20 (16) | C8—N2—C15—C10 | −2.12 (15) |
| N1—C1—C6—C5 | 175.14 (10) | C13—C14—C15—N2 | 178.62 (10) |
| C15—N2—C8—N1 | −179.88 (9) | C13—C14—C15—C10 | −0.51 (16) |
| C15—N2—C8—C9 | 0.96 (15) | N3—C10—C15—N2 | 1.58 (16) |
| C1—N1—C8—N2 | 9.51 (18) | C11—C10—C15—N2 | −178.32 (10) |
| C1—N1—C8—C9 | −171.29 (10) | N3—C10—C15—C14 | −179.31 (10) |
| C10—N3—C9—C8 | −1.45 (16) | C11—C10—C15—C14 | 0.79 (16) |
| Cg1 is the centroid of the C10–C15 ring. |
| H··· | ||||
| C6—H6···N2 | 0.95 | 2.34 | 2.9482 (14) | 122 |
| N1—H1n···O1w | 0.87 (1) | 2.03 (1) | 2.8951 (12) | 176.(2) |
| O1w—H1w···N2i | 0.85 (1) | 2.13 (1) | 2.9382 (13) | 160.(2) |
| O1w—H2w···N3ii | 0.84 (1) | 2.15 (1) | 2.9504 (12) | 158.(2) |
| C7—H7b···Cg1iii | 0.98 | 2.71 | 3.6532 (14) | 161 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C10–C15 ring.
| H⋯ | ||||
|---|---|---|---|---|
| C6—H6⋯N2 | 0.95 | 2.34 | 2.9482 (14) | 122 |
| N1—H1 | 0.87 (1) | 2.03 (1) | 2.8951 (12) | 176 (2) |
| O1w—H1 | 0.85 (1) | 2.13 (1) | 2.9382 (13) | 160 (2) |
| O1w—H2 | 0.84 (1) | 2.15 (1) | 2.9504 (12) | 158 (2) |
| C7—H7b⋯ | 0.98 | 2.71 | 3.6532 (14) | 161 |
Symmetry codes: (i) ; (ii) ; (iii) .