Literature DB >> 21588613

1-sec-Butyl-3-[hy-droxy(1-methyl-1H-indol-3-yl)methyl-idene]pyrrolidine-2,4-dione.

Hai-Zhen Xu, You-Quan Zhu.   

Abstract

In the title compound, C(18)H(20)N(2)O(3), the dihedral angle between the indole ring system (r.m.s. deviation = 0.018 Å) and the hy-droxy-methyl-enepyrrolidine-2,4-dione plane (r.m.s. deviation = 0.036 Å) is 9.87 (7)°. The keto and enol groups are involved in an intra-molecular O-H⋯O hydrogen bond. An intra-molecular C-H⋯O inter-action also occurs. The sec-butyl group is disordered over two orientations corresponding to an approximate 180° rotation about the N-C bond, with occupancies of 0.670 (6) and 0.330 (6). In the crystal, mol-ecules are linked into chains along the c axis by C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588613      PMCID: PMC3008104          DOI: 10.1107/S1600536810030679

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti­biotic activity of 3-acyl­pyrrolidine-2,4-dione compounds, see: Baan et al. (1978 ▶); Holzapfel et al. (1970 ▶); Mackellar et al. (1971 ▶); Matsuo et al. (1980 ▶); Rinehart et al. (1963 ▶); Sticking (1959 ▶); Wu et al. (2002 ▶). For a related structure, see: Ellis & Spek (2001 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C18H20N2O3 M = 312.36 Monoclinic, a = 11.781 (2) Å b = 10.529 (2) Å c = 12.644 (3) Å β = 97.18 (3)° V = 1556.1 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 113 K 0.18 × 0.16 × 0.10 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.984, T max = 0.991 12618 measured reflections 3698 independent reflections 2687 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.168 S = 1.13 3698 reflections 218 parameters 10 restraints H-atom parameters constrained Δρmax = 0.66 e Å−3 Δρmin = −0.57 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810030679/ci5139sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030679/ci5139Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H20N2O3F(000) = 664
Mr = 312.36Dx = 1.333 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4289 reflections
a = 11.781 (2) Åθ = 2.5–27.9°
b = 10.529 (2) ŵ = 0.09 mm1
c = 12.644 (3) ÅT = 113 K
β = 97.18 (3)°Prism, yellow
V = 1556.1 (5) Å30.18 × 0.16 × 0.10 mm
Z = 4
Rigaku Saturn diffractometer3698 independent reflections
Radiation source: fine-focus sealed tube2687 reflections with I > 2σ(I)
graphiteRint = 0.034
ω scansθmax = 27.9°, θmin = 2.6°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)h = −9→15
Tmin = 0.984, Tmax = 0.991k = −13→13
12618 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.168H-atom parameters constrained
S = 1.13w = 1/[σ2(Fo2) + (0.0947P)2 + 0.1812P] where P = (Fo2 + 2Fc2)/3
3698 reflections(Δ/σ)max = 0.001
218 parametersΔρmax = 0.66 e Å3
10 restraintsΔρmin = −0.57 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.66886 (10)1.07272 (11)0.42060 (10)0.0232 (3)
H10.62681.06430.46910.035*
O20.93397 (11)0.78344 (12)0.54741 (11)0.0297 (3)
O30.59380 (11)1.00771 (11)0.58894 (10)0.0258 (3)
N10.98265 (12)0.96858 (14)0.26733 (12)0.0224 (3)
N20.69798 (14)0.85187 (15)0.68474 (13)0.0282 (4)
C10.83455 (14)1.00283 (15)0.35989 (13)0.0194 (4)
C20.81236 (14)1.06960 (15)0.25917 (13)0.0202 (4)
C30.72166 (16)1.14252 (16)0.20819 (15)0.0253 (4)
H30.65601.15950.24250.030*
C40.72960 (18)1.18928 (18)0.10697 (15)0.0306 (4)
H40.66771.23680.07140.037*
C50.82620 (19)1.16822 (18)0.05608 (16)0.0319 (5)
H50.82991.2041−0.01230.038*
C60.91688 (17)1.09601 (17)0.10329 (15)0.0278 (4)
H60.98271.08100.06870.033*
C70.90694 (15)1.04631 (16)0.20424 (14)0.0216 (4)
C80.93954 (14)0.94263 (16)0.35943 (14)0.0211 (4)
H80.97570.89100.41540.025*
C91.08481 (15)0.91093 (18)0.23351 (16)0.0285 (4)
H9A1.12850.86810.29430.043*
H9B1.13220.97700.20650.043*
H9C1.06230.84890.17700.043*
C100.75981 (14)0.99897 (15)0.44100 (13)0.0186 (4)
C110.76929 (14)0.92599 (15)0.53493 (14)0.0201 (4)
C120.84678 (15)0.82736 (17)0.57785 (14)0.0236 (4)
C130.80043 (16)0.77699 (18)0.67725 (16)0.0298 (4)
H13A0.78160.68550.66960.036*
H13B0.85690.78900.74130.036*
C140.67860 (15)0.93502 (16)0.60328 (14)0.0220 (4)
C150.61807 (18)0.8307 (2)0.76310 (17)0.0412 (6)
H150.55200.88980.74550.049*
C160.6765 (2)0.8655 (4)0.87609 (19)0.0717 (10)
H16A0.70460.95110.87620.108*0.670 (6)
H16B0.62180.85820.92600.108*0.670 (6)
H16C0.73910.80850.89620.108*0.670 (6)
H16D0.70430.95110.87560.086*0.330 (6)
H16E0.74110.81060.89450.086*0.330 (6)
C170.5719 (2)0.6974 (2)0.7563 (2)0.0582 (8)
H17A0.51870.68740.80730.070*0.670 (6)
H17B0.63360.63880.77490.070*0.670 (6)
H17C0.53730.68200.68460.087*0.330 (6)
H17D0.63280.63780.77450.087*0.330 (6)
H17E0.51550.68750.80430.087*0.330 (6)
C180.5146 (3)0.6638 (3)0.6507 (3)0.0524 (13)0.670 (6)
H18A0.44530.71530.63460.079*0.670 (6)
H18B0.49390.57360.64950.079*0.670 (6)
H18C0.56620.68000.59710.079*0.670 (6)
C18'0.5954 (8)0.8519 (12)0.9604 (7)0.087 (4)0.330 (6)
H18D0.52550.90070.93870.130*0.330 (6)
H18E0.63260.88401.02870.130*0.330 (6)
H18F0.57580.76210.96780.130*0.330 (6)
U11U22U33U12U13U23
O10.0214 (6)0.0279 (7)0.0218 (7)0.0049 (5)0.0084 (5)0.0028 (5)
O20.0252 (7)0.0340 (7)0.0313 (8)0.0094 (6)0.0096 (6)0.0056 (6)
O30.0230 (6)0.0314 (7)0.0240 (7)0.0073 (5)0.0073 (5)0.0040 (5)
N10.0202 (7)0.0254 (7)0.0229 (8)−0.0016 (6)0.0077 (6)−0.0021 (6)
N20.0258 (8)0.0336 (8)0.0275 (8)0.0063 (7)0.0119 (7)0.0098 (6)
C10.0201 (8)0.0194 (8)0.0193 (8)−0.0042 (6)0.0051 (7)−0.0015 (6)
C20.0228 (8)0.0190 (8)0.0198 (8)−0.0036 (6)0.0063 (7)−0.0012 (6)
C30.0251 (9)0.0254 (9)0.0268 (10)−0.0003 (7)0.0085 (8)0.0016 (7)
C40.0356 (10)0.0301 (9)0.0265 (10)0.0024 (8)0.0062 (8)0.0053 (8)
C50.0441 (12)0.0315 (10)0.0222 (9)0.0004 (9)0.0123 (9)0.0059 (8)
C60.0333 (10)0.0275 (9)0.0248 (9)−0.0033 (8)0.0124 (8)−0.0010 (7)
C70.0235 (8)0.0198 (8)0.0227 (9)−0.0035 (7)0.0072 (7)−0.0025 (6)
C80.0203 (8)0.0242 (8)0.0194 (9)−0.0030 (7)0.0049 (7)−0.0021 (6)
C90.0219 (9)0.0339 (10)0.0318 (10)0.0016 (8)0.0120 (8)−0.0040 (8)
C100.0181 (8)0.0182 (8)0.0200 (9)−0.0017 (6)0.0039 (6)−0.0027 (6)
C110.0196 (8)0.0207 (8)0.0205 (9)−0.0002 (6)0.0051 (7)0.0003 (6)
C120.0233 (9)0.0260 (9)0.0222 (9)−0.0014 (7)0.0058 (7)0.0010 (7)
C130.0282 (9)0.0324 (10)0.0304 (10)0.0071 (8)0.0103 (8)0.0106 (8)
C140.0219 (8)0.0247 (8)0.0198 (9)−0.0015 (7)0.0046 (7)0.0006 (7)
C150.0355 (11)0.0539 (13)0.0387 (12)0.0133 (10)0.0218 (10)0.0209 (10)
C160.0500 (16)0.129 (3)0.0391 (15)0.0170 (17)0.0182 (13)0.0283 (16)
C170.0434 (13)0.0516 (14)0.086 (2)0.0139 (11)0.0349 (15)0.0354 (14)
C180.042 (2)0.0387 (19)0.080 (3)−0.0026 (16)0.020 (2)0.0083 (18)
C18'0.079 (6)0.126 (8)0.058 (6)0.012 (6)0.021 (5)0.010 (5)
O1—C101.322 (2)C10—C111.407 (2)
O1—H10.84C11—C121.443 (2)
O2—C121.231 (2)C11—C141.459 (2)
O3—C141.254 (2)C12—C131.527 (2)
N1—C81.355 (2)C13—H13A0.99
N1—C71.387 (2)C13—H13B0.99
N1—C91.459 (2)C15—C171.504 (3)
N2—C141.349 (2)C15—C161.550 (3)
N2—C131.455 (2)C15—H151.00
N2—C151.467 (2)C16—C18'1.525 (5)
C1—C81.390 (2)C16—H16A0.96
C1—C101.433 (2)C16—H16B0.96
C1—C21.450 (2)C16—H16C0.96
C2—C31.405 (2)C16—H16D0.96
C2—C71.406 (2)C16—H16E0.96
C3—C41.385 (3)C17—C181.462 (4)
C3—H30.95C17—H17A0.96
C4—C51.393 (3)C17—H17B0.96
C4—H40.95C17—H17C0.96
C5—C61.384 (3)C17—H17D0.96
C5—H50.95C17—H17E0.96
C6—C71.398 (3)C18—H18A0.98
C6—H60.95C18—H18B0.98
C8—H80.95C18—H18C0.98
C9—H9A0.98C18'—H18D0.98
C9—H9B0.98C18'—H18E0.98
C9—H9C0.98C18'—H18F0.98
C10—O1—H1109.5N2—C15—H15107.6
C8—N1—C7109.27 (14)C17—C15—H15107.6
C8—N1—C9125.41 (16)C16—C15—H15107.6
C7—N1—C9124.87 (15)C18'—C16—C15112.1 (5)
C14—N2—C13111.38 (14)C18'—C16—H16A109.5
C14—N2—C15123.56 (16)C15—C16—H16A109.6
C13—N2—C15124.71 (15)C15—C16—H16B109.2
C8—C1—C10128.05 (16)H16A—C16—H16B109.5
C8—C1—C2106.28 (14)C18'—C16—H16C106.5
C10—C1—C2125.66 (15)C15—C16—H16C109.6
C3—C2—C7118.22 (15)H16A—C16—H16C109.5
C3—C2—C1135.34 (15)H16B—C16—H16C109.5
C7—C2—C1106.40 (15)C18'—C16—H16D109.7
C4—C3—C2118.86 (17)C15—C16—H16D109.2
C4—C3—H3120.6H16B—C16—H16D109.7
C2—C3—H3120.6H16C—C16—H16D109.7
C3—C4—C5121.56 (19)C18'—C16—H16E108.7
C3—C4—H4119.2C15—C16—H16E109.2
C5—C4—H4119.2H16A—C16—H16E107.6
C6—C5—C4121.27 (17)H16B—C16—H16E111.7
C6—C5—H5119.4H16D—C16—H16E107.8
C4—C5—H5119.4C18—C17—C15113.6 (2)
C5—C6—C7116.82 (17)C18—C17—H17A108.8
C5—C6—H6121.6C15—C17—H17A109.0
C7—C6—H6121.6C18—C17—H17B108.5
N1—C7—C6128.67 (16)C15—C17—H17B109.1
N1—C7—C2108.13 (14)H17A—C17—H17B107.6
C6—C7—C2123.20 (17)C15—C17—H17C108.7
N1—C8—C1109.93 (16)H17A—C17—H17C112.4
N1—C8—H8125.0H17B—C17—H17C110.0
C1—C8—H8125.0C18—C17—H17D107.9
N1—C9—H9A109.5C15—C17—H17D110.0
N1—C9—H9B109.5H17A—C17—H17D107.3
H9A—C9—H9B109.5H17C—C17—H17D109.5
N1—C9—H9C109.5C18—C17—H17E105.9
H9A—C9—H9C109.5C15—C17—H17E109.8
H9B—C9—H9C109.5H17B—C17—H17E109.7
O1—C10—C11117.53 (14)H17C—C17—H17E109.5
O1—C10—C1113.52 (15)H17D—C17—H17E109.5
C11—C10—C1128.93 (15)C17—C18—H18A109.5
C10—C11—C12133.64 (15)H17C—C18—H18A107.5
C10—C11—C14118.53 (15)C17—C18—H18B109.5
C12—C11—C14107.45 (14)H17C—C18—H18B118.4
O2—C12—C11131.76 (16)H18A—C18—H18B109.5
O2—C12—C13121.67 (16)C17—C18—H18C109.5
C11—C12—C13106.56 (14)H17C—C18—H18C102.1
N2—C13—C12104.50 (14)H18A—C18—H18C109.5
N2—C13—H13A110.9H18B—C18—H18C109.5
C12—C13—H13A110.9C16—C18'—H18D109.5
N2—C13—H13B110.9H16B—C18'—H18D104.2
C12—C13—H13B110.9C16—C18'—H18E109.5
H13A—C13—H13B108.9H16B—C18'—H18E113.9
O3—C14—N2124.21 (16)H18D—C18'—H18E109.5
O3—C14—C11125.70 (16)C16—C18'—H18F109.5
N2—C14—C11110.08 (15)H16B—C18'—H18F110.2
N2—C15—C17111.19 (18)H18D—C18'—H18F109.5
N2—C15—C16109.75 (18)H18E—C18'—H18F109.5
C17—C15—C16112.9 (2)
C8—C1—C2—C3176.72 (18)C1—C10—C11—C12−5.6 (3)
C10—C1—C2—C3−1.9 (3)O1—C10—C11—C140.5 (2)
C8—C1—C2—C7−0.62 (18)C1—C10—C11—C14−177.42 (16)
C10—C1—C2—C7−179.19 (15)C10—C11—C12—O25.9 (3)
C7—C2—C3—C4−0.7 (3)C14—C11—C12—O2178.41 (19)
C1—C2—C3—C4−177.76 (18)C10—C11—C12—C13−173.30 (18)
C2—C3—C4—C5−1.6 (3)C14—C11—C12—C13−0.80 (19)
C3—C4—C5—C62.1 (3)C14—N2—C13—C121.2 (2)
C4—C5—C6—C7−0.4 (3)C15—N2—C13—C12174.59 (18)
C8—N1—C7—C6180.00 (18)O2—C12—C13—N2−179.49 (17)
C9—N1—C7—C6−7.3 (3)C11—C12—C13—N2−0.2 (2)
C8—N1—C7—C2−0.17 (19)C13—N2—C14—O3177.45 (17)
C9—N1—C7—C2172.49 (15)C15—N2—C14—O34.0 (3)
C5—C6—C7—N1177.90 (17)C13—N2—C14—C11−1.8 (2)
C5—C6—C7—C2−1.9 (3)C15—N2—C14—C11−175.24 (17)
C3—C2—C7—N1−177.39 (15)C10—C11—C14—O3−3.8 (3)
C1—C2—C7—N10.49 (18)C12—C11—C14—O3−177.61 (17)
C3—C2—C7—C62.5 (3)C10—C11—C14—N2175.43 (15)
C1—C2—C7—C6−179.67 (16)C12—C11—C14—N21.6 (2)
C7—N1—C8—C1−0.24 (19)C14—N2—C15—C17115.6 (2)
C9—N1—C8—C1−172.85 (15)C13—N2—C15—C17−57.0 (3)
C10—C1—C8—N1179.06 (16)C14—N2—C15—C16−118.7 (2)
C2—C1—C8—N10.53 (18)C13—N2—C15—C1668.7 (3)
C8—C1—C10—O1176.19 (15)N2—C15—C16—C18'177.0 (5)
C2—C1—C10—O1−5.5 (2)C17—C15—C16—C18'−58.3 (6)
C8—C1—C10—C11−5.8 (3)N2—C15—C17—C18−57.2 (3)
C2—C1—C10—C11172.44 (16)C16—C15—C17—C18178.9 (2)
O1—C10—C11—C12172.36 (17)
D—H···AD—HH···AD···AD—H···A
O1—H1···O30.841.722.5003 (19)154
C8—H8···O20.952.122.916 (2)140
C9—H9C···O2i0.982.513.441 (3)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O30.841.722.5003 (19)154
C8—H8⋯O20.952.122.916 (2)140
C9—H9C⋯O2i0.982.513.441 (3)159

Symmetry code: (i) .

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