Literature DB >> 21588607

Ethyl 2-methyl-5-oxo-4-(3,4,5-trimeth-oxy-phen-yl)-1,4,5,6,7,8-hexa-hydro-quinoline-3-carboxyl-ate.

S Natarajan, P Indumathi, B Palakshi Reddy, V Vijayakumar, P L Nilantha Lakshman.   

Abstract

In the mol-ecular structure of the title compound, C(22)H(27)NO(6), the dihydro-pyridine ring adopts a flattened boat conformation while the cyclo-hexenone ring is in an envelope conformation. In the crystal, mol-ecules stack parallel to the crystallographic a axis linked by inter-molecular N-H⋯O and C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588607      PMCID: PMC3008019          DOI: 10.1107/S1600536810030333

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the biological activity of quinoline derivatives, see: Baba (1997 ▶); Baba et al. (1997 ▶,1998 ▶); Davies et al. (2005 ▶); Rose & Draeger et al. (1992 ▶); Warrior et al. (2005 ▶).

Experimental

Crystal data

C22H27NO6 M = 401.44 Triclinic, a = 7.512 (2) Å b = 10.402 (1) Å c = 14.568 (3) Å α = 109.77 (3)° β = 95.42 (1)° γ = 104.41 (2)° V = 1017.4 (4) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 294 K 0.26 × 0.24 × 0.21 mm

Data collection

Nonius MACH3 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.976, T max = 0.980 4471 measured reflections 3574 independent reflections 2653 reflections with I > 2σ(I) R int = 0.013 3 standard reflections every 60 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.129 S = 1.03 3574 reflections 268 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1996 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810030333/jh2183sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030333/jh2183Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H27NO6Z = 2
Mr = 401.44F(000) = 428
Triclinic, P1Dx = 1.310 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.512 (2) ÅCell parameters from 25 reflections
b = 10.402 (1) Åθ = 2–25°
c = 14.568 (3) ŵ = 0.10 mm1
α = 109.77 (3)°T = 294 K
β = 95.42 (1)°Block, colourless
γ = 104.41 (2)°0.26 × 0.24 × 0.21 mm
V = 1017.4 (4) Å3
Nonius MACH3 diffractometer2653 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.013
graphiteθmax = 25.0°, θmin = 2.1°
ω–2θ scansh = −1→8
Absorption correction: ψ scan (North et al., 1968)k = −12→12
Tmin = 0.976, Tmax = 0.980l = −17→17
4471 measured reflections3 standard reflections every 60 min
3574 independent reflections intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.129w = 1/[σ2(Fo2) + (0.0609P)2 + 0.3979P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3574 reflectionsΔρmax = 0.23 e Å3
268 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.013 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C220.4600 (4)0.2952 (4)0.0056 (2)0.0841 (9)
H22A0.49220.3586−0.02930.101*
H22B0.35340.2153−0.03390.101*
H22C0.56420.26130.01780.101*
H1N−0.286 (4)−0.135 (3)0.2897 (18)0.061 (7)*
O40.68460 (19)0.35699 (15)0.22606 (11)0.0519 (4)
O30.36747 (19)0.26111 (15)0.50993 (10)0.0523 (4)
N1−0.1712 (2)−0.09684 (18)0.30488 (13)0.0405 (4)
O10.41288 (19)−0.16053 (16)0.25103 (12)0.0588 (4)
C60.1238 (2)−0.11864 (19)0.27165 (13)0.0323 (4)
C1−0.0644 (2)−0.17812 (19)0.25700 (13)0.0347 (4)
C80.0925 (2)0.09809 (19)0.40306 (13)0.0346 (4)
C9−0.0944 (2)0.0320 (2)0.38398 (14)0.0356 (4)
C150.4536 (2)0.20151 (19)0.27900 (14)0.0371 (4)
H150.54520.19910.32560.044*
O20.0990 (2)0.30115 (19)0.54511 (14)0.0765 (6)
C50.2404 (3)−0.2085 (2)0.23209 (15)0.0407 (5)
C160.5036 (3)0.28065 (19)0.22121 (15)0.0388 (4)
O60.4166 (2)0.36880 (18)0.09651 (13)0.0659 (5)
C190.1316 (3)0.1295 (2)0.19881 (14)0.0393 (4)
H190.00680.07880.19140.047*
C70.2165 (2)0.03861 (18)0.33288 (13)0.0330 (4)
H70.33320.04710.37400.040*
C140.2679 (2)0.12545 (18)0.26814 (13)0.0332 (4)
O50.0588 (2)0.21801 (19)0.06860 (13)0.0656 (5)
C3−0.0564 (3)−0.3963 (2)0.12134 (17)0.0557 (6)
H3A−0.0602−0.35780.06940.067*
H3B−0.1143−0.49910.09100.067*
C180.1810 (3)0.2088 (2)0.14062 (15)0.0430 (5)
C170.3684 (3)0.2858 (2)0.15175 (15)0.0438 (5)
C110.1788 (3)0.2281 (2)0.49145 (15)0.0446 (5)
C2−0.1646 (3)−0.3315 (2)0.19699 (16)0.0448 (5)
H2A−0.2869−0.33980.16310.054*
H2B−0.1832−0.38400.24080.054*
C10−0.2342 (3)0.0813 (2)0.44419 (16)0.0479 (5)
H10A−0.19860.08850.51120.058*
H10B−0.35650.01350.41520.058*
H10C−0.23660.17330.44450.058*
C40.1457 (3)−0.3643 (2)0.16960 (18)0.0539 (6)
H4A0.1496−0.41980.21110.065*
H4B0.2156−0.39520.11790.065*
C20−0.1304 (3)0.1336 (3)0.04654 (18)0.0630 (7)
H20A−0.19930.1503−0.00500.076*
H20B−0.18350.15880.10510.076*
H20C−0.13690.03420.02440.076*
C210.8277 (3)0.3578 (3)0.29756 (19)0.0573 (6)
H21A0.94660.41460.29350.069*
H21B0.83050.26160.28450.069*
H21C0.80250.39780.36300.069*
C130.6642 (3)0.4322 (3)0.5930 (2)0.0768 (8)
H13A0.72870.51560.65120.092*
H13B0.67680.45440.53470.092*
H13C0.71740.35640.59040.092*
C120.4662 (3)0.3867 (3)0.59723 (18)0.0667 (7)
H12A0.45300.36520.65650.080*
H12B0.41240.46350.60070.080*
U11U22U33U12U13U23
C220.0715 (18)0.133 (3)0.080 (2)0.0367 (18)0.0272 (15)0.072 (2)
O40.0339 (8)0.0517 (9)0.0690 (10)0.0004 (6)0.0116 (7)0.0298 (8)
O30.0343 (8)0.0524 (9)0.0480 (8)0.0054 (6)0.0031 (6)−0.0016 (7)
N10.0211 (8)0.0445 (9)0.0519 (10)0.0076 (7)0.0058 (7)0.0150 (8)
O10.0272 (8)0.0560 (9)0.0804 (11)0.0141 (7)0.0118 (7)0.0085 (8)
C60.0257 (9)0.0357 (10)0.0354 (9)0.0083 (7)0.0064 (7)0.0137 (8)
C10.0276 (9)0.0381 (10)0.0394 (10)0.0079 (8)0.0057 (8)0.0172 (8)
C80.0294 (9)0.0378 (10)0.0375 (10)0.0117 (8)0.0073 (8)0.0139 (8)
C90.0310 (10)0.0411 (10)0.0407 (10)0.0154 (8)0.0094 (8)0.0189 (8)
C150.0280 (9)0.0374 (10)0.0428 (11)0.0072 (8)0.0046 (8)0.0139 (8)
O20.0504 (10)0.0693 (11)0.0758 (12)0.0162 (8)0.0164 (9)−0.0140 (9)
C50.0321 (10)0.0433 (11)0.0455 (11)0.0111 (8)0.0085 (8)0.0152 (9)
C160.0322 (10)0.0323 (10)0.0487 (11)0.0065 (8)0.0120 (8)0.0128 (8)
O60.0674 (11)0.0684 (11)0.0800 (12)0.0172 (9)0.0201 (9)0.0508 (10)
C190.0279 (9)0.0405 (10)0.0452 (11)0.0065 (8)0.0061 (8)0.0138 (9)
C70.0230 (8)0.0367 (10)0.0379 (10)0.0082 (7)0.0054 (7)0.0129 (8)
C140.0278 (9)0.0311 (9)0.0370 (10)0.0084 (7)0.0077 (7)0.0082 (8)
O50.0493 (10)0.0834 (12)0.0730 (11)0.0173 (8)−0.0018 (8)0.0458 (10)
C30.0474 (13)0.0447 (12)0.0554 (13)0.0020 (10)0.0087 (10)0.0035 (10)
C180.0408 (11)0.0454 (11)0.0438 (11)0.0160 (9)0.0042 (9)0.0167 (9)
C170.0456 (12)0.0406 (11)0.0496 (12)0.0129 (9)0.0128 (9)0.0215 (9)
C110.0380 (11)0.0462 (11)0.0463 (11)0.0114 (9)0.0111 (9)0.0133 (9)
C20.0322 (10)0.0419 (11)0.0521 (12)0.0030 (8)0.0034 (9)0.0145 (9)
C100.0340 (11)0.0593 (13)0.0570 (13)0.0217 (9)0.0163 (9)0.0223 (10)
C40.0470 (12)0.0435 (12)0.0636 (14)0.0163 (10)0.0146 (11)0.0080 (10)
C200.0466 (13)0.0887 (18)0.0515 (13)0.0309 (13)0.0002 (10)0.0186 (13)
C210.0307 (11)0.0586 (14)0.0789 (16)0.0055 (10)0.0112 (11)0.0268 (12)
C130.0482 (14)0.0747 (17)0.0697 (17)0.0042 (12)−0.0008 (12)−0.0059 (14)
C120.0475 (13)0.0650 (15)0.0528 (14)0.0008 (11)0.0051 (11)−0.0078 (12)
C22—O61.402 (3)C19—H190.9300
C22—H22A0.9600C7—C141.525 (2)
C22—H22B0.9600C7—H70.9800
C22—H22C0.9600O5—C181.372 (2)
O4—C161.375 (2)O5—C201.413 (3)
O4—C211.421 (3)C3—C21.506 (3)
O3—C111.350 (2)C3—C41.516 (3)
O3—C121.446 (3)C3—H3A0.9700
N1—C11.374 (2)C3—H3B0.9700
N1—C91.379 (3)C18—C171.399 (3)
N1—H1N0.83 (3)C2—H2A0.9700
O1—C51.234 (2)C2—H2B0.9700
C6—C11.358 (2)C10—H10A0.9600
C6—C51.453 (3)C10—H10B0.9600
C6—C71.512 (3)C10—H10C0.9600
C1—C21.486 (3)C4—H4A0.9700
C8—C91.355 (2)C4—H4B0.9700
C8—C111.461 (3)C20—H20A0.9600
C8—C71.528 (2)C20—H20B0.9600
C9—C101.508 (3)C20—H20C0.9600
C15—C161.379 (3)C21—H21A0.9600
C15—C141.386 (2)C21—H21B0.9600
C15—H150.9300C21—H21C0.9600
O2—C111.209 (2)C13—C121.458 (3)
C5—C41.505 (3)C13—H13A0.9600
C16—C171.389 (3)C13—H13B0.9600
O6—C171.376 (2)C13—H13C0.9600
C19—C181.384 (3)C12—H12A0.9700
C19—C141.387 (3)C12—H12B0.9700
O6—C22—H22A109.5O5—C18—C19125.06 (18)
O6—C22—H22B109.5O5—C18—C17114.73 (18)
H22A—C22—H22B109.5C19—C18—C17120.20 (18)
O6—C22—H22C109.5O6—C17—C16120.62 (18)
H22A—C22—H22C109.5O6—C17—C18120.21 (18)
H22B—C22—H22C109.5C16—C17—C18119.13 (18)
C16—O4—C21117.61 (16)O2—C11—O3121.13 (19)
C11—O3—C12116.21 (17)O2—C11—C8126.93 (19)
C1—N1—C9122.70 (16)O3—C11—C8111.93 (16)
C1—N1—H1N116.1 (17)C1—C2—C3111.44 (16)
C9—N1—H1N120.6 (17)C1—C2—H2A109.3
C1—C6—C5119.71 (16)C3—C2—H2A109.3
C1—C6—C7121.31 (16)C1—C2—H2B109.3
C5—C6—C7118.90 (15)C3—C2—H2B109.3
C6—C1—N1119.52 (17)H2A—C2—H2B108.0
C6—C1—C2124.04 (17)C9—C10—H10A109.5
N1—C1—C2116.30 (16)C9—C10—H10B109.5
C9—C8—C11120.34 (17)H10A—C10—H10B109.5
C9—C8—C7120.86 (17)C9—C10—H10C109.5
C11—C8—C7118.80 (16)H10A—C10—H10C109.5
C8—C9—N1119.58 (17)H10B—C10—H10C109.5
C8—C9—C10126.59 (18)C5—C4—C3113.84 (18)
N1—C9—C10113.77 (16)C5—C4—H4A108.8
C16—C15—C14120.44 (18)C3—C4—H4A108.8
C16—C15—H15119.8C5—C4—H4B108.8
C14—C15—H15119.8C3—C4—H4B108.8
O1—C5—C6121.43 (18)H4A—C4—H4B107.7
O1—C5—C4120.26 (18)O5—C20—H20A109.5
C6—C5—C4118.29 (16)O5—C20—H20B109.5
O4—C16—C15124.14 (18)H20A—C20—H20B109.5
O4—C16—C17115.44 (17)O5—C20—H20C109.5
C15—C16—C17120.42 (17)H20A—C20—H20C109.5
C17—O6—C22113.52 (19)H20B—C20—H20C109.5
C18—C19—C14120.14 (17)O4—C21—H21A109.5
C18—C19—H19119.9O4—C21—H21B109.5
C14—C19—H19119.9H21A—C21—H21B109.5
C6—C7—C14112.18 (15)O4—C21—H21C109.5
C6—C7—C8110.40 (14)H21A—C21—H21C109.5
C14—C7—C8111.39 (14)H21B—C21—H21C109.5
C6—C7—H7107.6C12—C13—H13A109.5
C14—C7—H7107.6C12—C13—H13B109.5
C8—C7—H7107.6H13A—C13—H13B109.5
C15—C14—C19119.66 (17)C12—C13—H13C109.5
C15—C14—C7119.36 (16)H13A—C13—H13C109.5
C19—C14—C7120.98 (16)H13B—C13—H13C109.5
C18—O5—C20118.35 (18)O3—C12—C13110.0 (2)
C2—C3—C4110.79 (18)O3—C12—H12A109.7
C2—C3—H3A109.5C13—C12—H12A109.7
C4—C3—H3A109.5O3—C12—H12B109.7
C2—C3—H3B109.5C13—C12—H12B109.7
C4—C3—H3B109.5H12A—C12—H12B108.2
H3A—C3—H3B108.1
C5—C6—C1—N1171.81 (16)C6—C7—C14—C15−120.58 (18)
C7—C6—C1—N1−5.1 (3)C8—C7—C14—C15115.10 (18)
C5—C6—C1—C2−3.6 (3)C6—C7—C14—C1959.5 (2)
C7—C6—C1—C2179.45 (17)C8—C7—C14—C19−64.8 (2)
C9—N1—C1—C6−14.9 (3)C20—O5—C18—C19−4.4 (3)
C9—N1—C1—C2160.86 (18)C20—O5—C18—C17174.56 (19)
C11—C8—C9—N1−174.65 (17)C14—C19—C18—O5178.62 (19)
C7—C8—C9—N15.4 (3)C14—C19—C18—C17−0.3 (3)
C11—C8—C9—C102.4 (3)C22—O6—C17—C1691.5 (3)
C7—C8—C9—C10−177.55 (17)C22—O6—C17—C18−90.4 (3)
C1—N1—C9—C814.7 (3)O4—C16—C17—O6−3.2 (3)
C1—N1—C9—C10−162.71 (17)C15—C16—C17—O6177.59 (18)
C1—C6—C5—O1−173.80 (19)O4—C16—C17—C18178.77 (17)
C7—C6—C5—O13.2 (3)C15—C16—C17—C18−0.5 (3)
C1—C6—C5—C44.2 (3)O5—C18—C17—O63.4 (3)
C7—C6—C5—C4−178.84 (18)C19—C18—C17—O6−177.62 (18)
C21—O4—C16—C15−2.2 (3)O5—C18—C17—C16−178.56 (18)
C21—O4—C16—C17178.60 (18)C19—C18—C17—C160.5 (3)
C14—C15—C16—O4−178.84 (17)C12—O3—C11—O20.6 (3)
C14—C15—C16—C170.3 (3)C12—O3—C11—C8−178.82 (19)
C1—C6—C7—C14−103.04 (19)C9—C8—C11—O2−12.8 (3)
C5—C6—C7—C1480.0 (2)C7—C8—C11—O2167.2 (2)
C1—C6—C7—C821.8 (2)C9—C8—C11—O3166.62 (17)
C5—C6—C7—C8−155.10 (16)C7—C8—C11—O3−13.4 (2)
C9—C8—C7—C6−22.0 (2)C6—C1—C2—C3−24.4 (3)
C11—C8—C7—C6158.08 (16)N1—C1—C2—C3160.04 (18)
C9—C8—C7—C14103.36 (19)C4—C3—C2—C149.9 (3)
C11—C8—C7—C14−76.6 (2)O1—C5—C4—C3−158.6 (2)
C16—C15—C14—C19−0.2 (3)C6—C5—C4—C323.5 (3)
C16—C15—C14—C7179.89 (16)C2—C3—C4—C5−50.4 (3)
C18—C19—C14—C150.1 (3)C11—O3—C12—C13−164.3 (2)
C18—C19—C14—C7−179.92 (17)
D—H···AD—HH···AD···AD—H···A
C7—H7···O30.982.362.720 (2)101
N1—H1N···O1i0.83 (3)2.21 (3)2.995 (2)160 (3)
C2—H2B···O4ii0.972.553.340 (3)138
C10—H10B···O1i0.962.593.429 (3)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.83 (3)2.21 (3)2.995 (2)160 (3)
C2—H2B⋯O4ii0.972.553.340 (3)138
C10—H10B⋯O1i0.962.593.429 (3)146

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Cellular factors as alternative targets for inhibition of HIV-1.

Authors:  M Baba
Journal:  Antiviral Res       Date:  1997-02       Impact factor: 5.970

3.  Potent and selective inhibition of human immunodeficiency virus type 1 transcription by piperazinyloxoquinoline derivatives.

Authors:  M Baba; M Okamoto; M Makino; Y Kimura; T Ikeuchi; T Sakaguchi; T Okamoto
Journal:  Antimicrob Agents Chemother       Date:  1997-06       Impact factor: 5.191

4.  Inhibition of human immunodeficiency virus type 1 replication and cytokine production by fluoroquinoline derivatives.

Authors:  M Baba; M Okamoto; M Kawamura; M Makino; T Higashida; T Takashi; Y Kimura; T Ikeuchi; T Tetsuka; T Okamoto
Journal:  Mol Pharmacol       Date:  1998-06       Impact factor: 4.436

5.  Synthesis, configuration, and calcium modulatory properties of enantiomerically pure 5-oxo-1,4,5,6,7,8-hexahydroquinoline-3-carboxylates.

Authors:  U Rose; M Dräger
Journal:  J Med Chem       Date:  1992-06-12       Impact factor: 7.446

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  1 in total

1.  Crystal structure and metabolic activity of 4-(thien-2-yl)-2-methyl-5-oxo-1,4,5,6,7,8-hexa-hydro-quinoline-3-carb-oxy-lic acid eth-oxy-carbonyl-phenyl-methyl-ester.

Authors:  Anatoly Mishnev; Egils Bisenieks; Ilona Mandrika; Ramona Petrovska; Zenta Kalme; Imanta Bruvere; Gunars Duburs
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-10-12
  1 in total

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