| Literature DB >> 21588606 |
S Natarajan, V Hema, J Kalyana Sundar, J Suresh, P L Nilantha Lakshman.
Abstract
In the title compound, C(4)H(8)N(2)O(3)·C(4)H(6)O(6), the amino acid mol-ecule exists as a zwitterion and the carb-oxy-lic acid in an un-ionized state. The tartaric acid mol-ecules are linked into layers parallel to the ab plane by O-H⋯O hydrogen bonds. The amino acid mol-ecules are also linked into layers parallel to the ab plane by N-H⋯O and C-H⋯O hydrogen bonds. The alternating tartaric acid and amino acid layers are linked into a three-dimensional framework by N-H⋯O and O-H⋯O hydrogen bonds.Entities:
Year: 2010 PMID: 21588606 PMCID: PMC3008049 DOI: 10.1107/S1600536810030771
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H8N2O3·C4H6O6 | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 25 reflections |
| θ = 2.7–25° | |
| µ = 0.15 mm−1 | |
| β = 95.311 (8)° | Block, colourless |
| 0.28 × 0.23 × 0.21 mm | |
| Nonius MACH-3 diffractometer | 1015 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 25.0°, θmin = 2.7° |
| ω–2θ scans | |
| Absorption correction: ψ scan (North | |
| 1339 measured reflections | 2 standard reflections every 60 min |
| 1073 independent reflections | intensity decay: none |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1073 reflections | (Δ/σ)max = 0.001 |
| 172 parameters | Δρmax = 0.34 e Å−3 |
| 1 restraint | Δρmin = −0.40 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.0957 (12) | 0.4538 (7) | 0.1832 (5) | 0.0531 (18) | |
| O2 | 0.7732 (11) | 0.5170 (7) | 0.5295 (5) | 0.0459 (16) | |
| O3 | 0.5946 (13) | 0.3196 (8) | 0.5798 (5) | 0.0544 (18) | |
| N1 | 0.0876 (12) | 0.6710 (7) | 0.2495 (5) | 0.0377 (16) | |
| H1A | −0.0578 | 0.6889 | 0.2091 | 0.045* | |
| H1B | 0.1622 | 0.7336 | 0.2930 | 0.045* | |
| N2 | 0.2460 (11) | 0.3066 (7) | 0.4019 (5) | 0.0322 (14) | |
| H2A | 0.0730 | 0.3170 | 0.3847 | 0.039* | |
| H2B | 0.2741 | 0.2509 | 0.4617 | 0.039* | |
| H2C | 0.3176 | 0.2698 | 0.3430 | 0.039* | |
| C1 | 0.6013 (12) | 0.4214 (8) | 0.5193 (5) | 0.0280 (15) | |
| C2 | 0.3687 (13) | 0.4442 (8) | 0.4293 (5) | 0.0263 (15) | |
| H2 | 0.2378 | 0.5013 | 0.4633 | 0.032* | |
| C3 | 0.4415 (14) | 0.5175 (8) | 0.3216 (6) | 0.0333 (17) | |
| H3A | 0.5336 | 0.6030 | 0.3420 | 0.040* | |
| H3B | 0.5585 | 0.4592 | 0.2822 | 0.040* | |
| C4 | 0.1954 (14) | 0.5483 (8) | 0.2447 (6) | 0.0328 (16) | |
| O4 | 0.2756 (10) | −0.0470 (6) | −0.0292 (4) | 0.0378 (13) | |
| H4 | 0.1664 | −0.0392 | −0.0843 | 0.057* | |
| O5 | 0.4110 (10) | 0.1599 (6) | −0.0849 (5) | 0.0396 (14) | |
| O6 | 0.8377 (9) | 0.1558 (6) | 0.0676 (4) | 0.0355 (13) | |
| H6 | 0.7635 | 0.2283 | 0.0478 | 0.053* | |
| O7 | 0.3467 (9) | 0.1735 (7) | 0.1895 (4) | 0.0385 (14) | |
| H7 | 0.2136 | 0.1605 | 0.1462 | 0.058* | |
| O8 | 0.7364 (9) | 0.1781 (7) | 0.3463 (5) | 0.0418 (15) | |
| O9 | 0.9010 (10) | −0.0231 (6) | 0.2943 (5) | 0.0378 (14) | |
| H9 | 1.0049 | −0.0102 | 0.3505 | 0.057* | |
| C5 | 0.4314 (12) | 0.0606 (9) | −0.0232 (5) | 0.0283 (15) | |
| C6 | 0.6460 (13) | 0.0500 (8) | 0.0750 (6) | 0.0269 (15) | |
| H6A | 0.7333 | −0.0400 | 0.0712 | 0.032* | |
| C7 | 0.5159 (12) | 0.0584 (8) | 0.1865 (6) | 0.0296 (15) | |
| H7A | 0.4173 | −0.0268 | 0.1977 | 0.035* | |
| C8 | 0.7309 (12) | 0.0778 (8) | 0.2842 (5) | 0.0274 (16) |
| O1 | 0.054 (4) | 0.034 (3) | 0.061 (4) | 0.011 (3) | −0.043 (3) | −0.010 (3) |
| O2 | 0.034 (3) | 0.052 (4) | 0.047 (3) | −0.006 (3) | −0.025 (2) | 0.006 (3) |
| O3 | 0.052 (4) | 0.050 (4) | 0.054 (4) | −0.010 (3) | −0.032 (3) | 0.018 (3) |
| N1 | 0.034 (3) | 0.037 (4) | 0.039 (3) | 0.002 (3) | −0.017 (3) | −0.002 (3) |
| N2 | 0.022 (3) | 0.039 (4) | 0.033 (3) | −0.003 (3) | −0.009 (2) | −0.001 (3) |
| C1 | 0.017 (3) | 0.042 (4) | 0.023 (3) | 0.003 (3) | −0.008 (2) | −0.003 (3) |
| C2 | 0.023 (3) | 0.033 (4) | 0.021 (3) | 0.003 (3) | −0.008 (3) | −0.004 (3) |
| C3 | 0.027 (3) | 0.041 (4) | 0.030 (3) | −0.003 (3) | −0.010 (3) | 0.005 (3) |
| C4 | 0.029 (3) | 0.036 (4) | 0.031 (3) | −0.001 (3) | −0.011 (3) | 0.003 (3) |
| O4 | 0.035 (3) | 0.033 (3) | 0.041 (3) | −0.005 (3) | −0.023 (2) | 0.001 (3) |
| O5 | 0.034 (3) | 0.043 (3) | 0.038 (3) | −0.001 (3) | −0.012 (2) | 0.008 (3) |
| O6 | 0.023 (2) | 0.041 (3) | 0.040 (3) | −0.004 (2) | −0.0068 (19) | 0.001 (3) |
| O7 | 0.021 (2) | 0.054 (4) | 0.037 (3) | 0.008 (2) | −0.0123 (19) | −0.008 (3) |
| O8 | 0.023 (2) | 0.056 (4) | 0.044 (3) | 0.004 (3) | −0.015 (2) | −0.019 (3) |
| O9 | 0.029 (3) | 0.041 (3) | 0.039 (3) | 0.006 (2) | −0.019 (2) | 0.000 (3) |
| C5 | 0.021 (3) | 0.037 (4) | 0.026 (3) | 0.006 (3) | −0.007 (2) | −0.006 (3) |
| C6 | 0.019 (3) | 0.029 (3) | 0.030 (4) | 0.001 (3) | −0.008 (3) | −0.002 (3) |
| C7 | 0.019 (3) | 0.036 (4) | 0.031 (3) | 0.002 (3) | −0.011 (2) | −0.001 (3) |
| C8 | 0.017 (3) | 0.039 (4) | 0.025 (3) | −0.002 (3) | −0.005 (2) | 0.003 (3) |
| O1—C4 | 1.247 (10) | O4—C5 | 1.306 (10) |
| O2—C1 | 1.271 (10) | O4—H4 | 0.82 |
| O3—C1 | 1.219 (10) | O5—C5 | 1.205 (10) |
| N1—C4 | 1.311 (11) | O6—C6 | 1.422 (9) |
| N1—H1A | 0.86 | O6—H6 | 0.82 |
| N1—H1B | 0.86 | O7—C7 | 1.409 (9) |
| N2—C2 | 1.492 (10) | O7—H7 | 0.82 |
| N2—H2A | 0.89 | O8—C8 | 1.215 (9) |
| N2—H2B | 0.89 | O9—C8 | 1.302 (9) |
| N2—H2C | 0.89 | O9—H9 | 0.82 |
| C1—C2 | 1.533 (9) | C5—C6 | 1.522 (9) |
| C2—C3 | 1.533 (10) | C6—C7 | 1.532 (10) |
| C2—H2 | 0.98 | C6—H6A | 0.98 |
| C3—C4 | 1.507 (9) | C7—C8 | 1.528 (8) |
| C3—H3A | 0.97 | C7—H7A | 0.98 |
| C3—H3B | 0.97 | ||
| C4—N1—H1A | 120.0 | O1—C4—C3 | 118.6 (7) |
| C4—N1—H1B | 120.0 | N1—C4—C3 | 118.7 (7) |
| H1A—N1—H1B | 120.0 | C5—O4—H4 | 109.5 |
| C2—N2—H2A | 109.5 | C6—O6—H6 | 109.5 |
| C2—N2—H2B | 109.5 | C7—O7—H7 | 109.5 |
| H2A—N2—H2B | 109.5 | C8—O9—H9 | 109.5 |
| C2—N2—H2C | 109.5 | O5—C5—O4 | 125.7 (6) |
| H2A—N2—H2C | 109.5 | O5—C5—C6 | 122.1 (7) |
| H2B—N2—H2C | 109.5 | O4—C5—C6 | 112.1 (6) |
| O3—C1—O2 | 126.0 (6) | O6—C6—C5 | 110.6 (6) |
| O3—C1—C2 | 117.5 (6) | O6—C6—C7 | 111.6 (6) |
| O2—C1—C2 | 116.2 (7) | C5—C6—C7 | 108.5 (5) |
| N2—C2—C3 | 111.1 (5) | O6—C6—H6A | 108.7 |
| N2—C2—C1 | 107.6 (6) | C5—C6—H6A | 108.7 |
| C3—C2—C1 | 114.5 (5) | C7—C6—H6A | 108.7 |
| N2—C2—H2 | 107.8 | O7—C7—C8 | 106.3 (6) |
| C3—C2—H2 | 107.8 | O7—C7—C6 | 112.2 (6) |
| C1—C2—H2 | 107.8 | C8—C7—C6 | 108.8 (5) |
| C4—C3—C2 | 110.0 (6) | O7—C7—H7A | 109.8 |
| C4—C3—H3A | 109.7 | C8—C7—H7A | 109.8 |
| C2—C3—H3A | 109.7 | C6—C7—H7A | 109.8 |
| C4—C3—H3B | 109.7 | O8—C8—O9 | 124.4 (6) |
| C2—C3—H3B | 109.7 | O8—C8—C7 | 122.0 (6) |
| H3A—C3—H3B | 108.2 | O9—C8—C7 | 113.6 (6) |
| O1—C4—N1 | 122.6 (6) | ||
| O3—C1—C2—N2 | −24.9 (9) | O5—C5—C6—C7 | 111.3 (8) |
| O2—C1—C2—N2 | 160.4 (6) | O4—C5—C6—C7 | −67.4 (8) |
| O3—C1—C2—C3 | −149.0 (7) | O6—C6—C7—O7 | 70.9 (7) |
| O2—C1—C2—C3 | 36.4 (9) | C5—C6—C7—O7 | −51.2 (8) |
| N2—C2—C3—C4 | 63.9 (8) | O6—C6—C7—C8 | −46.4 (8) |
| C1—C2—C3—C4 | −173.9 (6) | C5—C6—C7—C8 | −168.5 (6) |
| C2—C3—C4—O1 | −80.7 (9) | O7—C7—C8—O8 | −0.7 (9) |
| C2—C3—C4—N1 | 95.9 (8) | C6—C7—C8—O8 | 120.3 (7) |
| O5—C5—C6—O6 | −11.4 (9) | O7—C7—C8—O9 | 178.5 (6) |
| O4—C5—C6—O6 | 170.0 (6) | C6—C7—C8—O9 | −60.6 (8) |
| H··· | ||||
| N1—H1A···O5i | 0.86 | 2.23 | 3.053 (8) | 160 |
| N1—H1B···O3ii | 0.86 | 2.04 | 2.856 (9) | 159 |
| N2—H2A···O8iii | 0.89 | 2.19 | 2.895 (8) | 136 |
| N2—H2B···O2iv | 0.89 | 2.28 | 2.921 (9) | 129 |
| N2—H2C···O7 | 0.89 | 2.06 | 2.912 (8) | 160 |
| N2—H2C···O8 | 0.89 | 2.30 | 2.916 (8) | 126 |
| O4—H4···O1v | 0.82 | 1.69 | 2.500 (6) | 168 |
| O6—H6···O4vi | 0.82 | 2.19 | 2.959 (8) | 156 |
| O7—H7···O6iii | 0.82 | 2.05 | 2.850 (7) | 166 |
| O9—H9···O2vii | 0.82 | 1.75 | 2.570 (7) | 180 |
| C2—H2···O2iii | 0.98 | 2.56 | 3.426 (9) | 147 |
| C3—H3A···O3ii | 0.97 | 2.40 | 3.158 (10) | 134 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.23 | 3.053 (8) | 160 |
| N1—H1 | 0.86 | 2.04 | 2.856 (9) | 159 |
| N2—H2 | 0.89 | 2.19 | 2.895 (8) | 136 |
| N2—H2 | 0.89 | 2.28 | 2.921 (9) | 129 |
| N2—H2 | 0.89 | 2.06 | 2.912 (8) | 160 |
| N2—H2 | 0.89 | 2.30 | 2.916 (8) | 126 |
| O4—H4⋯O1v | 0.82 | 1.69 | 2.500 (6) | 168 |
| O6—H6⋯O4vi | 0.82 | 2.19 | 2.959 (8) | 156 |
| O7—H7⋯O6iii | 0.82 | 2.05 | 2.850 (7) | 166 |
| O9—H9⋯O2vii | 0.82 | 1.75 | 2.570 (7) | 180 |
| C2—H2⋯O2iii | 0.98 | 2.56 | 3.426 (9) | 147 |
| C3—H3 | 0.97 | 2.40 | 3.158 (10) | 134 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .