Literature DB >> 21588585

Piperazine-1,4-diium bis-(perchlorate) dihydrate.

Cong-Hu Peng1.   

Abstract

The asymmetric unit of the title compound, C(4)H(12)N(2) (2+)·2ClO(4) (-)·2H(2)O, contains half of a piperazinediium cation, one perchlorate anion and one water mol-ecule. The diprotonated piperazine ring, which is completed by crystallographic inversion symmetry, adopts a chair conformation. In the crystal structure, the cations and anions are linked by inter-molecular N-H⋯O and O-H⋯O hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2010        PMID: 21588585      PMCID: PMC3007905          DOI: 10.1107/S1600536810030345

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to simple mol­ecular–ionic crystals containing organic cations and acid radicals (1:1 molar ratio), see: Katrusiak & Szafrański (1999 ▶, 2006 ▶).

Experimental

Crystal data

C4H12N2 2+·2ClO4 −·2H2O M = 323.09 Monoclinic, a = 7.2588 (15) Å b = 6.5089 (13) Å c = 14.543 (4) Å β = 113.56 (3)° V = 629.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.56 mm−1 T = 293 K 0.28 × 0.26 × 0.20 mm

Data collection

Rigaku Mercury 2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.856, T max = 0.896 6362 measured reflections 1458 independent reflections 1130 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.109 S = 1.07 1458 reflections 83 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810030345/pv2304sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030345/pv2304Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H12N22+·2ClO4·2H2OF(000) = 336
Mr = 323.09Dx = 1.704 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1130 reflections
a = 7.2588 (15) Åθ = 3.1–27.5°
b = 6.5089 (13) ŵ = 0.56 mm1
c = 14.543 (4) ÅT = 293 K
β = 113.56 (3)°Block, colorless
V = 629.8 (3) Å30.28 × 0.26 × 0.20 mm
Z = 2
Rigaku Mercury 2 diffractometer1458 independent reflections
Radiation source: fine-focus sealed tube1130 reflections with I > 2σ(I)
graphiteRint = 0.060
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.1°
ω scansh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)k = −8→8
Tmin = 0.856, Tmax = 0.896l = −18→18
6362 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.0357P)2 + 0.361P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
1458 reflectionsΔρmax = 0.28 e Å3
83 parametersΔρmin = −0.25 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.044 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3021 (4)1.0866 (4)0.94987 (19)0.0411 (6)
H1C0.25161.01170.88700.049*
H1D0.19891.18210.94910.049*
C20.3493 (4)0.9393 (4)1.03562 (19)0.0426 (6)
H2B0.39041.01491.09810.051*
H2A0.23030.86031.02720.051*
Cl10.78737 (8)0.59992 (10)0.84112 (4)0.0390 (2)
N10.5133 (3)0.7985 (3)1.03919 (15)0.0401 (5)
H1B0.47150.72340.98250.048*
H1A0.54200.71151.09120.048*
O10.9198 (3)0.7709 (4)0.87194 (18)0.0765 (7)
O20.7472 (3)0.5298 (3)0.92385 (14)0.0561 (6)
O30.6016 (3)0.6622 (3)0.76257 (13)0.0562 (6)
O40.8781 (4)0.4421 (4)0.80648 (18)0.0853 (8)
O51.3089 (2)0.5745 (3)0.85594 (12)0.0421 (5)
H5WB1.36000.60400.82070.063*
H5WA1.18570.56530.83240.063*
U11U22U33U12U13U23
C10.0416 (14)0.0393 (14)0.0403 (14)0.0025 (11)0.0140 (11)0.0007 (11)
C20.0444 (14)0.0446 (15)0.0407 (14)−0.0009 (12)0.0189 (12)0.0031 (11)
Cl10.0336 (3)0.0498 (4)0.0351 (3)−0.0020 (3)0.0152 (2)−0.0022 (3)
N10.0538 (13)0.0292 (10)0.0348 (11)−0.0025 (9)0.0149 (9)0.0020 (9)
O10.0532 (13)0.0832 (17)0.0868 (16)−0.0303 (12)0.0214 (12)0.0037 (13)
O20.0542 (11)0.0726 (14)0.0442 (11)−0.0003 (10)0.0226 (9)0.0140 (10)
O30.0415 (10)0.0814 (15)0.0391 (10)0.0024 (10)0.0091 (9)0.0105 (10)
O40.0803 (16)0.102 (2)0.0775 (17)0.0328 (15)0.0362 (14)−0.0225 (14)
O50.0373 (9)0.0469 (11)0.0433 (10)0.0015 (8)0.0174 (8)0.0026 (8)
C1—N1i1.487 (3)Cl1—O11.421 (2)
C1—C21.500 (3)Cl1—O21.4218 (19)
C1—H1C0.97Cl1—O31.4339 (19)
C1—H1D0.97N1—C1i1.487 (3)
C2—N11.487 (3)N1—H1B0.90
C2—H2B0.97N1—H1A0.90
C2—H2A0.97O5—H5WB0.77
Cl1—O41.417 (2)O5—H5WA0.82
N1i—C1—C2109.6 (2)O4—Cl1—O2110.46 (15)
N1i—C1—H1C109.7O1—Cl1—O2109.05 (14)
C2—C1—H1C109.7O4—Cl1—O3110.15 (14)
N1i—C1—H1D109.7O1—Cl1—O3109.38 (14)
C2—C1—H1D109.7O2—Cl1—O3108.62 (12)
H1C—C1—H1D108.2C2—N1—C1i111.62 (19)
N1—C2—C1109.7 (2)C2—N1—H1B109.3
N1—C2—H2B109.7C1i—N1—H1B109.3
C1—C2—H2B109.7C2—N1—H1A109.3
N1—C2—H2A109.7C1i—N1—H1A109.3
C1—C2—H2A109.7H1B—N1—H1A108.0
H2B—C2—H2A108.2H5WB—O5—H5WA118.5
O4—Cl1—O1109.16 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1B···O5ii0.902.002.875 (3)165
N1—H1A···O5iii0.902.142.883 (3)140
N1—H1A···O3iv0.902.493.060 (3)122
N1—H1A···O2v0.902.563.040 (3)114
O5—H5WB···O3vi0.772.262.999 (3)161
O5—H5WA···O10.822.593.192 (3)131
O5—H5WA···O40.822.263.040 (3)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯O5i0.902.002.875 (3)165
N1—H1A⋯O5ii0.902.142.883 (3)140
N1—H1A⋯O3iii0.902.493.060 (3)122
N1—H1A⋯O2iv0.902.563.040 (3)114
O5—H5WB⋯O3v0.772.262.999 (3)161
O5—H5WA⋯O10.822.593.192 (3)131
O5—H5WA⋯O40.822.263.040 (3)159

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Disproportionation of pyrazine in NH+...N hydrogen-bonded complexes: new materials of exceptional dielectric response.

Authors:  Andrzej Katrusiak; Marek Szafrański
Journal:  J Am Chem Soc       Date:  2006-12-13       Impact factor: 15.419

  2 in total

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