Literature DB >> 21588574

2-Amino-5-bromo-pyridinium 3-carb-oxy-prop-2-enoate.

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

In the title salt, C(5)H(6)BrN(2) (+)·C(4)H(3)O(4) (-), the n class="Chemical">2-amino-5-bromo-pyridinium cation and hydrogen maleate anion are planar, with maximum deviations from their mean planes of 0.016 (1) and 0.039 (1) Å, respectively. An intra-molecular O-H⋯O hydrogen bond generates an S(7) ring motif in the anion. In the crystal, the protonated N atom and the 2-amino group of the cation are hydrogen-bonded to the carboxyl-ate O atoms of the anion via a pair of N-H⋯O hydrogen bonds, forming an R(2) (2)(8) ring motif. The motifs are linked into a two-dimensional network parallel to (011) by N-H⋯O and C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588574      PMCID: PMC3007912          DOI: 10.1107/S1600536810030059

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry of substituted pyridines, see: Pozharski et al. (1997 ▶); Katritzky et al. (1996 ▶). For details of n class="Chemical">maleic acid, see; Bowes et al. (2003 ▶); Jin et al. (2003 ▶); Lah & Leban (2003 ▶); Allen (2002 ▶). For bond-length data, see: Allen et al. (1987 ▶). For details of hydrogen bonding, see: Jeffrey & Saenger (1991 ▶); Jeffrey (1997 ▶); Scheiner (1997 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C5H6BrN2C4H3O4 M = 289.09 Triclinic, a = 5.7434 (1) Å b = 9.5871 (1) Å c = 10.3034 (2) Å α = 80.455 (1)° β = 74.175 (1)° γ = 85.123 (1)° V = 537.80 (2) Å3 Z = 2 Mo Kα radiation μ = 3.82 mm−1 T = 100 K 0.55 × 0.26 × 0.17 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.226, T max = 0.554 17591 measured reflections 4705 independent reflections 4235 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.064 S = 1.06 4705 reflections 157 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.11 e Å−3 Δρmin = −0.70 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810030059/ci5141sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030059/ci5141Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H6BrN2+·C4H3O4Z = 2
Mr = 289.09F(000) = 288
Triclinic, P1Dx = 1.785 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.7434 (1) ÅCell parameters from 9953 reflections
b = 9.5871 (1) Åθ = 2.8–35.2°
c = 10.3034 (2) ŵ = 3.82 mm1
α = 80.455 (1)°T = 100 K
β = 74.175 (1)°Plate, colourless
γ = 85.123 (1)°0.55 × 0.26 × 0.17 mm
V = 537.80 (2) Å3
Bruker SMART APEXII CCD area-detector diffractometer4705 independent reflections
Radiation source: fine-focus sealed tube4235 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 35.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→8
Tmin = 0.226, Tmax = 0.554k = −15→15
17591 measured reflectionsl = −16→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.024Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.064H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0326P)2 + 0.177P] where P = (Fo2 + 2Fc2)/3
4705 reflections(Δ/σ)max = 0.001
157 parametersΔρmax = 1.11 e Å3
0 restraintsΔρmin = −0.70 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.08004 (2)0.537686 (13)0.294128 (12)0.02696 (4)
N10.42643 (16)0.83409 (10)−0.01859 (9)0.01624 (14)
N20.81699 (17)0.85829 (11)−0.15773 (10)0.02185 (17)
C10.65936 (17)0.78492 (11)−0.05651 (10)0.01673 (16)
C20.72501 (19)0.65511 (12)0.01629 (11)0.01905 (18)
H2A0.88420.6194−0.00620.023*
C30.55552 (19)0.58268 (11)0.11897 (11)0.01939 (18)
H3A0.59790.49710.16590.023*
C40.31486 (19)0.63883 (11)0.15333 (11)0.01821 (17)
C50.25417 (18)0.76411 (11)0.08418 (10)0.01714 (16)
H5A0.09620.80170.10690.021*
O10.81743 (14)0.18263 (11)0.44160 (9)0.02726 (19)
H1O10.74890.15840.52880.041*
O20.68803 (15)0.26191 (9)0.25903 (8)0.02102 (15)
O30.63826 (14)0.09096 (10)0.68047 (9)0.02256 (16)
O40.27013 (14)0.06052 (9)0.82150 (8)0.01999 (14)
C60.64341 (18)0.21863 (11)0.38215 (10)0.01679 (16)
C70.38534 (18)0.20548 (12)0.46279 (11)0.01807 (17)
H7A0.27290.23530.41280.022*
C80.28808 (18)0.15795 (12)0.59511 (11)0.01824 (17)
H8A0.11970.16160.62200.022*
C90.40698 (18)0.09990 (11)0.70659 (10)0.01663 (16)
H1N10.381 (3)0.913 (2)−0.0621 (19)0.026 (4)*
H1N20.769 (3)0.931 (2)−0.2027 (19)0.028 (4)*
H2N20.956 (4)0.827 (2)−0.183 (2)0.038 (5)*
U11U22U33U12U13U23
Br10.02461 (6)0.02342 (6)0.02515 (6)−0.00137 (4)0.00082 (4)0.00590 (4)
N10.0158 (3)0.0172 (4)0.0146 (3)0.0015 (3)−0.0040 (3)−0.0003 (3)
N20.0163 (3)0.0246 (4)0.0203 (4)0.0009 (3)−0.0015 (3)0.0024 (3)
C10.0153 (4)0.0190 (4)0.0154 (4)0.0006 (3)−0.0039 (3)−0.0021 (3)
C20.0171 (4)0.0184 (4)0.0213 (4)0.0028 (3)−0.0059 (3)−0.0023 (3)
C30.0209 (4)0.0162 (4)0.0206 (4)0.0022 (3)−0.0067 (3)−0.0009 (3)
C40.0191 (4)0.0175 (4)0.0163 (4)−0.0004 (3)−0.0031 (3)−0.0005 (3)
C50.0164 (4)0.0179 (4)0.0158 (4)0.0006 (3)−0.0031 (3)−0.0015 (3)
O10.0143 (3)0.0452 (5)0.0193 (4)−0.0035 (3)−0.0053 (3)0.0062 (3)
O20.0205 (3)0.0239 (4)0.0163 (3)0.0014 (3)−0.0039 (3)0.0010 (3)
O30.0157 (3)0.0322 (4)0.0184 (3)−0.0007 (3)−0.0058 (3)0.0021 (3)
O40.0193 (3)0.0209 (4)0.0162 (3)0.0023 (3)−0.0016 (3)0.0008 (3)
C60.0158 (4)0.0164 (4)0.0172 (4)−0.0001 (3)−0.0041 (3)−0.0006 (3)
C70.0146 (4)0.0213 (4)0.0178 (4)0.0011 (3)−0.0053 (3)−0.0006 (3)
C80.0146 (4)0.0211 (4)0.0177 (4)0.0009 (3)−0.0042 (3)−0.0002 (3)
C90.0171 (4)0.0164 (4)0.0161 (4)0.0006 (3)−0.0046 (3)−0.0017 (3)
Br1—C41.8848 (11)C4—C51.3609 (15)
N1—C11.3540 (13)C5—H5A0.93
N1—C51.3624 (13)O1—C61.3032 (12)
N1—H1N10.870 (19)O1—H1O10.88
N2—C11.3237 (14)O2—C61.2301 (13)
N2—H1N20.842 (19)O3—C91.2796 (12)
N2—H2N20.82 (2)O4—C91.2477 (12)
C1—C21.4207 (15)C6—C71.4929 (14)
C2—C31.3633 (16)C7—C81.3417 (15)
C2—H2A0.93C7—H7A0.93
C3—C41.4126 (15)C8—C91.4988 (14)
C3—H3A0.93C8—H8A0.93
C1—N1—C5123.02 (9)C3—C4—Br1119.31 (8)
C1—N1—H1N1119.6 (13)C4—C5—N1119.57 (9)
C5—N1—H1N1117.3 (13)C4—C5—H5A120.2
C1—N2—H1N2119.8 (13)N1—C5—H5A120.2
C1—N2—H2N2120.2 (15)C6—O1—H1O1106.9
H1N2—N2—H2N2120 (2)O2—C6—O1120.95 (9)
N2—C1—N1119.76 (10)O2—C6—C7118.87 (9)
N2—C1—C2122.44 (9)O1—C6—C7120.17 (9)
N1—C1—C2117.79 (9)C8—C7—C6130.95 (9)
C3—C2—C1120.27 (9)C8—C7—H7A114.5
C3—C2—H2A119.9C6—C7—H7A114.5
C1—C2—H2A119.9C7—C8—C9130.44 (9)
C2—C3—C4119.36 (10)C7—C8—H8A114.8
C2—C3—H3A120.3C9—C8—H8A114.8
C4—C3—H3A120.3O4—C9—O3123.48 (10)
C5—C4—C3119.99 (10)O4—C9—C8116.75 (9)
C5—C4—Br1120.70 (8)O3—C9—C8119.77 (9)
C5—N1—C1—N2179.73 (10)Br1—C4—C5—N1−178.99 (8)
C5—N1—C1—C2−0.79 (15)C1—N1—C5—C40.00 (16)
N2—C1—C2—C3−179.37 (11)O2—C6—C7—C8177.71 (12)
N1—C1—C2—C31.17 (16)O1—C6—C7—C8−1.27 (19)
C1—C2—C3—C4−0.77 (16)C6—C7—C8—C9−1.0 (2)
C2—C3—C4—C5−0.03 (17)C7—C8—C9—O4−178.65 (11)
C2—C3—C4—Br1179.39 (8)C7—C8—C9—O30.33 (18)
C3—C4—C5—N10.43 (16)
D—H···AD—HH···AD···AD—H···A
O1—H1O1···O30.881.572.4380 (13)171
N1—H1N1···O4i0.87 (2)1.88 (2)2.7426 (13)169 (2)
N2—H1N2···O3i0.84 (2)2.01 (2)2.8495 (14)174 (2)
N2—H2N2···O2ii0.82 (2)2.14 (2)2.9534 (13)176 (2)
C3—H3A···O20.932.373.2937 (14)171
C5—H5A···O4iii0.932.393.3051 (14)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯O30.881.572.4380 (13)171
N1—H1N1⋯O4i0.87 (2)1.88 (2)2.7426 (13)169 (2)
N2—H1N2⋯O3i0.84 (2)2.01 (2)2.8495 (14)174 (2)
N2—H2N2⋯O2ii0.82 (2)2.14 (2)2.9534 (13)176 (2)
C3—H3A⋯O20.932.373.2937 (14)171
C5—H5A⋯O4iii0.932.393.3051 (14)167

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  Salts of maleic and fumaric acids with organic polyamines: comparison of isomeric acids as building blocks in supramolecular chemistry.

Authors:  Katharine F Bowes; George Ferguson; Alan J Lough; Christopher Glidewell
Journal:  Acta Crystallogr B       Date:  2003-01-28

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  4-aminopyridinium hydrogen maleate.

Authors:  Nina Lah; Ivan Leban
Journal:  Acta Crystallogr C       Date:  2003-08-23       Impact factor: 1.172

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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