Literature DB >> 21588551

Poly[[tris-(μ(2)-4,4'-bipyridine N,N'-di-oxide)hexa-nitratodigadolinium(III)] dichloro-methane disolvate].

Adam J Dillner1, Cassandra P Lilly, Jacqueline M Knaust.   

Abstract

The title one-dimensional coordination network, {[n class="Chemical">Gd(2)(NO(3))(6)(C(10)H(8)N(2)O(2))(3)]·2CH(2)Cl(2)}(n), is isostructural with the previously reported Tb and Tl coordination networks and to its Eu analog. The Gd(III) cation is coordinated in a distorted tricapped trigonal-prismatic fashion by nine O atoms from three bridging 4,4'-bipyridine N,N'-dioxide ligands and three chelating nitrate anions. None of the atoms lie on a special position, but there is an inversion center located between the rings of one of the ligands. The network topology is ladder-like, and each ladder inter-acts with six neighboring ladders through C-H⋯O hydrogen bonds. The packing motif of the ladders allows for the formation of channels that run parallel to the a axis; these channels are filled with CH(2)Cl(2) solvent mol-ecules that inter-act with the ladders through C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588551      PMCID: PMC3008111          DOI: 10.1107/S1600536810033258

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isostructural Tb and n class="Chemical">Tl, coordination networks, see: Long et al. (2002 ▶); Moitsheki et al. (2006 ▶). For the isostructural Eu coordination network and detailed background to this study, see: Dillner et al. (2010 ▶).

Experimental

Crystal data

[Gd2(NO3)6(C10n class="Species">H8N2O2)3]·2CH2Cl2 M = 1420.96 Triclinic, a = 7.9917 (5) Å b = 11.5668 (7) Å c = 13.0347 (8) Å α = 86.059 (1)° β = 80.134 (1)° γ = 78.255 (1)° V = 1161.52 (12) Å3 Z = 1 Mo Kα radiation μ = 3.16 mm−1 T = 100 K 0.51 × 0.48 × 0.25 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.529, T max = 0.746 13791 measured reflections 6990 independent reflections 6776 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.020 wR(F 2) = 0.051 S = 1.06 6990 reflections 334 parameters H-atom parameters constrained Δρmax = 1.34 e Å−3 Δρmin = −1.26 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: X-SEED. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810033258/zl2303sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810033258/zl2303Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Gd2(NO3)6(C10H8N2O2)3]·2CH2Cl2Z = 1
Mr = 1420.96F(000) = 692
Triclinic, P1Dx = 2.031 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.9917 (5) ÅCell parameters from 9995 reflections
b = 11.5668 (7) Åθ = 2.4–31.4°
c = 13.0347 (8) ŵ = 3.16 mm1
α = 86.059 (1)°T = 100 K
β = 80.134 (1)°Plate, yellow
γ = 78.255 (1)°0.51 × 0.48 × 0.25 mm
V = 1161.52 (12) Å3
Bruker SMART APEX CCD diffractometer6990 independent reflections
Radiation source: fine-focus sealed tube6776 reflections with I > 2σ(I)
graphiteRint = 0.019
ω scansθmax = 31.5°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.529, Tmax = 0.746k = −16→16
13791 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.020Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.051H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0269P)2 + 0.7108P] where P = (Fo2 + 2Fc2)/3
6990 reflections(Δ/σ)max = 0.003
334 parametersΔρmax = 1.34 e Å3
0 restraintsΔρmin = −1.26 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Gd10.777386 (9)0.833312 (7)0.717678 (6)0.01052 (3)
O11.02444 (16)0.82720 (11)0.59321 (10)0.0154 (2)
O20.95666 (17)0.87415 (12)0.83066 (9)0.0156 (2)
O30.62864 (17)0.87372 (12)0.57713 (9)0.0165 (2)
O40.80192 (19)0.63739 (12)0.64108 (12)0.0228 (3)
O50.95223 (19)0.63785 (12)0.76314 (11)0.0215 (3)
O60.9729 (2)0.47510 (14)0.68376 (16)0.0329 (4)
O70.48223 (18)0.79088 (13)0.77573 (10)0.0200 (3)
O80.64333 (17)0.77345 (13)0.89476 (11)0.0200 (3)
O90.37413 (18)0.75493 (13)0.93691 (11)0.0224 (3)
O100.80809 (18)1.04012 (12)0.66218 (10)0.0186 (3)
O110.59902 (18)1.01912 (12)0.78729 (11)0.0191 (3)
O120.6429 (3)1.19502 (15)0.73675 (17)0.0438 (5)
N11.15539 (19)0.73739 (13)0.56764 (11)0.0133 (3)
N20.91991 (19)0.86889 (13)0.93448 (11)0.0126 (3)
N30.69504 (19)0.86834 (13)0.47630 (11)0.0132 (3)
N40.9111 (2)0.57955 (14)0.69595 (14)0.0191 (3)
N50.49582 (19)0.77173 (13)0.87144 (12)0.0149 (3)
N60.6826 (2)1.08859 (15)0.72846 (13)0.0201 (3)
C11.1729 (3)0.68680 (17)0.47533 (15)0.0200 (4)
H11.09240.71540.42930.024*
C21.3074 (3)0.59355 (18)0.44774 (15)0.0204 (4)
H21.31850.55810.38270.024*
C31.4277 (2)0.55043 (15)0.51390 (13)0.0129 (3)
C41.4065 (2)0.60763 (17)0.60766 (14)0.0177 (3)
H41.48690.58230.65440.021*
C51.2700 (2)0.70055 (17)0.63297 (14)0.0179 (3)
H51.25690.73870.69690.021*
C60.9834 (2)0.76999 (16)0.98742 (14)0.0154 (3)
H61.05190.70400.95060.018*
C70.9492 (2)0.76424 (15)1.09522 (14)0.0153 (3)
H70.99320.69411.13220.018*
C80.8502 (2)0.86129 (15)1.14956 (13)0.0126 (3)
C90.7879 (2)0.96209 (15)1.09168 (13)0.0147 (3)
H90.72081.02981.12660.018*
C100.8227 (2)0.96446 (15)0.98455 (13)0.0149 (3)
H100.77851.03310.94580.018*
C110.7464 (2)0.96300 (15)0.42487 (14)0.0158 (3)
H110.74561.03120.46170.019*
C120.8003 (2)0.96117 (16)0.31859 (13)0.0158 (3)
H120.83411.02890.28220.019*
C130.8053 (2)0.86070 (15)0.26447 (13)0.0125 (3)
C140.7610 (3)0.76171 (16)0.32125 (14)0.0182 (3)
H140.76940.69030.28710.022*
C150.7051 (3)0.76792 (17)0.42680 (14)0.0192 (3)
H150.67330.70080.46530.023*
C160.5603 (3)0.60138 (19)1.10231 (18)0.0274 (4)
H16A0.58160.60581.02520.033*
H16B0.54140.68261.12730.033*
Cl10.74334 (7)0.51440 (4)1.14775 (4)0.02581 (10)
Cl20.37217 (7)0.54128 (6)1.14632 (5)0.03300 (12)
U11U22U33U12U13U23
Gd10.01086 (4)0.01200 (4)0.00842 (4)−0.00199 (3)−0.00084 (3)−0.00099 (3)
O10.0135 (6)0.0135 (5)0.0165 (6)0.0004 (4)0.0023 (4)−0.0032 (4)
O20.0171 (6)0.0228 (6)0.0077 (5)−0.0069 (5)−0.0002 (4)−0.0010 (4)
O30.0157 (6)0.0253 (6)0.0072 (5)−0.0025 (5)−0.0004 (4)−0.0001 (4)
O40.0244 (7)0.0162 (6)0.0299 (8)−0.0021 (5)−0.0116 (6)−0.0034 (5)
O50.0256 (7)0.0168 (6)0.0221 (7)−0.0001 (5)−0.0081 (5)−0.0025 (5)
O60.0301 (8)0.0153 (7)0.0541 (11)0.0024 (6)−0.0136 (8)−0.0090 (7)
O70.0187 (6)0.0300 (7)0.0136 (6)−0.0096 (5)−0.0040 (5)0.0010 (5)
O80.0145 (6)0.0303 (7)0.0169 (6)−0.0085 (5)−0.0045 (5)0.0055 (5)
O90.0146 (6)0.0271 (7)0.0223 (7)−0.0042 (5)0.0027 (5)0.0063 (5)
O100.0202 (6)0.0169 (6)0.0166 (6)−0.0025 (5)0.0012 (5)−0.0002 (5)
O110.0180 (6)0.0176 (6)0.0190 (6)−0.0021 (5)0.0025 (5)−0.0009 (5)
O120.0555 (12)0.0136 (7)0.0512 (12)−0.0006 (7)0.0156 (9)−0.0018 (7)
N10.0120 (6)0.0130 (6)0.0139 (6)−0.0021 (5)0.0007 (5)−0.0016 (5)
N20.0129 (6)0.0171 (7)0.0090 (6)−0.0055 (5)−0.0011 (5)−0.0020 (5)
N30.0130 (6)0.0172 (7)0.0094 (6)−0.0027 (5)−0.0020 (5)0.0000 (5)
N40.0162 (7)0.0153 (7)0.0253 (8)−0.0028 (6)−0.0022 (6)−0.0017 (6)
N50.0131 (6)0.0137 (6)0.0175 (7)−0.0027 (5)−0.0018 (5)0.0012 (5)
N60.0220 (8)0.0162 (7)0.0195 (8)−0.0003 (6)−0.0005 (6)−0.0008 (6)
C10.0214 (9)0.0221 (9)0.0145 (8)0.0037 (7)−0.0051 (7)−0.0047 (7)
C20.0222 (9)0.0225 (9)0.0153 (8)0.0028 (7)−0.0057 (7)−0.0082 (7)
C30.0124 (7)0.0140 (7)0.0124 (7)−0.0043 (6)0.0002 (6)−0.0025 (6)
C40.0143 (8)0.0231 (9)0.0152 (8)0.0008 (6)−0.0030 (6)−0.0071 (6)
C50.0151 (8)0.0233 (9)0.0154 (8)−0.0016 (6)−0.0025 (6)−0.0085 (6)
C60.0155 (8)0.0158 (7)0.0139 (8)−0.0013 (6)−0.0008 (6)−0.0032 (6)
C70.0167 (8)0.0142 (7)0.0141 (8)−0.0004 (6)−0.0024 (6)−0.0009 (6)
C80.0120 (7)0.0153 (7)0.0105 (7)−0.0027 (6)−0.0016 (5)−0.0007 (5)
C90.0157 (8)0.0148 (7)0.0121 (7)−0.0007 (6)−0.0007 (6)−0.0016 (6)
C100.0163 (8)0.0153 (7)0.0124 (7)−0.0021 (6)−0.0020 (6)0.0002 (6)
C110.0205 (8)0.0136 (7)0.0138 (8)−0.0039 (6)−0.0028 (6)−0.0014 (6)
C120.0211 (8)0.0146 (7)0.0125 (7)−0.0064 (6)−0.0017 (6)0.0001 (6)
C130.0118 (7)0.0146 (7)0.0105 (7)−0.0013 (5)−0.0017 (5)0.0000 (5)
C140.0278 (9)0.0140 (8)0.0134 (8)−0.0051 (7)−0.0033 (7)−0.0012 (6)
C150.0295 (10)0.0168 (8)0.0133 (8)−0.0095 (7)−0.0039 (7)0.0015 (6)
C160.0267 (10)0.0235 (10)0.0293 (11)−0.0009 (8)−0.0048 (8)0.0068 (8)
Cl10.0292 (2)0.0199 (2)0.0288 (2)−0.00077 (18)−0.01067 (19)−0.00114 (17)
Cl20.0267 (3)0.0391 (3)0.0304 (3)−0.0049 (2)−0.0016 (2)0.0060 (2)
Gd1—O32.3216 (13)C1—H10.9500
Gd1—O12.3230 (13)C2—C31.395 (2)
Gd1—O22.3534 (13)C2—H20.9500
Gd1—O112.4601 (13)C3—C41.398 (2)
Gd1—O82.4879 (14)C3—C3i1.481 (3)
Gd1—O72.4872 (14)C4—C51.379 (2)
Gd1—O52.4958 (14)C4—H40.9500
Gd1—O42.4967 (14)C5—H50.9500
Gd1—O102.4992 (14)C6—C71.384 (2)
Gd1—N62.9021 (17)C6—H60.9500
Gd1—N52.9152 (15)C7—C81.394 (2)
Gd1—N42.9277 (16)C7—H70.9500
O1—N11.3308 (18)C8—C91.396 (2)
O2—N21.3346 (18)C8—C13ii1.479 (2)
O3—N31.3310 (18)C9—C101.376 (2)
O4—N41.277 (2)C9—H90.9500
O5—N41.265 (2)C10—H100.9500
O6—N41.219 (2)C11—C121.379 (2)
O7—N51.271 (2)C11—H110.9500
O8—N51.271 (2)C12—C131.391 (2)
O9—N51.217 (2)C12—H120.9500
O10—N61.268 (2)C13—C141.394 (2)
O11—N61.280 (2)C13—C8iii1.479 (2)
O12—N61.215 (2)C14—C151.374 (3)
N1—C51.343 (2)C14—H140.9500
N1—C11.347 (2)C15—H150.9500
N2—C61.348 (2)C16—Cl11.766 (2)
N2—C101.352 (2)C16—Cl21.774 (2)
N3—C111.343 (2)C16—H16A0.9900
N3—C151.349 (2)C16—H16B0.9900
C1—C21.378 (3)
O3—Gd1—O185.06 (5)C5—N1—C1121.14 (15)
O3—Gd1—O2154.22 (5)O2—N2—C6119.65 (14)
O1—Gd1—O283.54 (5)O2—N2—C10119.01 (14)
O3—Gd1—O1185.96 (5)C6—N2—C10121.33 (15)
O1—Gd1—O11122.79 (4)O3—N3—C11120.02 (15)
O2—Gd1—O1180.97 (5)O3—N3—C15118.90 (15)
O3—Gd1—O8123.47 (4)C11—N3—C15121.06 (15)
O1—Gd1—O8148.53 (5)O6—N4—O5122.12 (18)
O2—Gd1—O874.82 (4)O6—N4—O4122.15 (18)
O11—Gd1—O876.46 (5)O5—N4—O4115.72 (15)
O3—Gd1—O772.31 (4)O6—N4—Gd1177.12 (15)
O1—Gd1—O7150.94 (5)O5—N4—Gd157.84 (9)
O2—Gd1—O7124.33 (4)O4—N4—Gd157.95 (9)
O11—Gd1—O774.51 (5)O9—N5—O8122.12 (16)
O8—Gd1—O751.32 (4)O9—N5—O7122.00 (16)
O3—Gd1—O5125.67 (5)O8—N5—O7115.87 (15)
O1—Gd1—O579.17 (5)O9—N5—Gd1175.14 (13)
O2—Gd1—O574.49 (5)O8—N5—Gd158.03 (9)
O11—Gd1—O5144.96 (5)O7—N5—Gd158.00 (8)
O8—Gd1—O573.25 (5)O12—N6—O10122.46 (18)
O7—Gd1—O599.15 (5)O12—N6—O11121.17 (17)
O3—Gd1—O475.01 (5)O10—N6—O11116.37 (15)
O1—Gd1—O478.88 (5)O12—N6—Gd1177.69 (16)
O2—Gd1—O4124.87 (5)O10—N6—Gd159.06 (9)
O11—Gd1—O4150.14 (5)O11—N6—Gd157.34 (8)
O8—Gd1—O494.89 (5)N1—C1—C2120.02 (17)
O7—Gd1—O477.84 (5)N1—C1—H1120.0
O5—Gd1—O451.08 (5)C2—C1—H1120.0
O3—Gd1—O1076.63 (5)C1—C2—C3120.99 (16)
O1—Gd1—O1071.20 (4)C1—C2—H2119.5
O2—Gd1—O1077.83 (5)C3—C2—H2119.5
O11—Gd1—O1051.76 (4)C2—C3—C4116.88 (16)
O8—Gd1—O10124.27 (5)C2—C3—C3i121.81 (19)
O7—Gd1—O10118.86 (5)C4—C3—C3i121.3 (2)
O5—Gd1—O10141.26 (5)C5—C4—C3120.61 (17)
O4—Gd1—O10140.09 (5)C5—C4—H4119.7
O3—Gd1—N680.79 (5)C3—C4—H4119.7
O1—Gd1—N696.87 (5)N1—C5—C4120.33 (16)
O2—Gd1—N677.73 (5)N1—C5—H5119.8
O11—Gd1—N625.98 (4)C4—C5—H5119.8
O8—Gd1—N6100.45 (5)N2—C6—C7120.24 (16)
O7—Gd1—N697.21 (5)N2—C6—H6119.9
O5—Gd1—N6152.20 (5)C7—C6—H6119.9
O4—Gd1—N6155.69 (5)C6—C7—C8120.07 (16)
O10—Gd1—N625.79 (4)C6—C7—H7120.0
O3—Gd1—N597.81 (4)C8—C7—H7120.0
O1—Gd1—N5164.46 (4)C7—C8—C9117.78 (15)
O2—Gd1—N599.36 (4)C7—C8—C13ii123.06 (15)
O11—Gd1—N572.72 (4)C9—C8—C13ii119.14 (15)
O8—Gd1—N525.68 (4)C10—C9—C8120.69 (16)
O7—Gd1—N525.68 (4)C10—C9—H9119.7
O5—Gd1—N586.86 (5)C8—C9—H9119.7
O4—Gd1—N587.08 (5)N2—C10—C9119.89 (16)
O10—Gd1—N5124.33 (4)N2—C10—H10120.1
N6—Gd1—N598.67 (5)C9—C10—H10120.1
O3—Gd1—N4100.41 (5)N3—C11—C12120.02 (16)
O1—Gd1—N477.11 (5)N3—C11—H11120.0
O2—Gd1—N499.46 (5)C12—C11—H11120.0
O11—Gd1—N4159.79 (5)C11—C12—C13120.29 (16)
O8—Gd1—N484.12 (5)C11—C12—H12119.9
O7—Gd1—N489.07 (5)C13—C12—H12119.9
O5—Gd1—N425.41 (5)C12—C13—C14118.11 (15)
O4—Gd1—N425.69 (5)C12—C13—C8iii120.50 (15)
O10—Gd1—N4148.30 (5)C14—C13—C8iii121.35 (15)
N6—Gd1—N4173.67 (5)C15—C14—C13119.68 (16)
N5—Gd1—N487.36 (4)C15—C14—H14120.2
N1—O1—Gd1129.39 (10)C13—C14—H14120.2
N2—O2—Gd1124.82 (10)N3—C15—C14120.67 (17)
N3—O3—Gd1127.48 (10)N3—C15—H15119.7
N4—O4—Gd196.36 (10)C14—C15—H15119.7
N4—O5—Gd196.75 (11)Cl1—C16—Cl2111.26 (12)
N5—O7—Gd196.32 (10)Cl1—C16—H16A109.4
N5—O8—Gd196.29 (10)Cl2—C16—H16A109.4
N6—O10—Gd195.16 (11)Cl1—C16—H16B109.4
N6—O11—Gd196.67 (10)Cl2—C16—H16B109.4
O1—N1—C5119.58 (14)H16A—C16—H16B108.0
O1—N1—C1119.26 (15)
D—H···AD—HH···AD···AD—H···A
C5—H5···O7iv0.952.413.082 (2)127.
C9—H9···O9v0.952.573.287 (2)132.
C12—H12···O2vi0.952.433.300 (2)152.
C16—H16B···O12v0.992.433.246 (3)139.
C16—H16A···O80.992.563.302 (3)132.
C16—H16A···O90.992.503.084 (3)117.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O7i0.952.413.082 (2)127
C9—H9⋯O9ii0.952.573.287 (2)132
C12—H12⋯O2iii0.952.433.300 (2)152
C16—H16B⋯O12ii0.992.433.246 (3)139
C16—H16A⋯O80.992.563.302 (3)132
C16—H16A⋯O90.992.503.084 (3)117

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Constructing terbium co-ordination polymers of 4,4'-bipyridine-N,N'-dioxide by means of diffusion solvent mixtures.

Authors:  De-Liang Long; Alexander J Blake; Neil R Champness; Claire Wilson; Martin Schröder
Journal:  Chemistry       Date:  2002-05-03       Impact factor: 5.236

3.  Poly[[tris-(μ(2)-4,4'-bipyridine N,N'-di-oxide)hexa-nitratodieuropium(III)] dichloro-methane disolvate].

Authors:  Adam J Dillner; Cassandra P Lilly; Jacqueline M Knaust
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-21
  3 in total
  2 in total

1.  Poly[[tris-(μ(2)-4,4'-bipyridine N,N'-di-oxide)hexa-nitratodieuropium(III)] dichloro-methane disolvate].

Authors:  Adam J Dillner; Cassandra P Lilly; Jacqueline M Knaust
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-21

2.  Crystal structures of [Ln(NO3)3(μ2-bpydo)2], where Ln = Ce, Pr or Nd, and bpydo = 4,4'-bi-pyridine N,N'-dioxide: layered coordination networks containing 4(4) grids.

Authors:  Michael L Stromyer; Cassandra P Lilly; Adam J Dillner; Jacqueline M Knaust
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-01-01
  2 in total

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