Literature DB >> 21588549

Acetato-chlorido[2,2'-(ethane-1,2-di-yl)di-1H-benzimidazole]-copper(II) monohydrate.

Yu-Xian Li, Huai-Xia Yang, Ya-Nan Ding, Xiang-Ru Meng.   

Abstract

In the title complex, [Cu(CH(3)COO)Cl(C(16)H(14)n class="Chemical">N(4))H(2)O, the Cu(II) ion is five-coordinated by two N atoms from a 2,2'-(ethane-1,2-di-yl)di-1H-benzimidazole ligand, two O atoms from a chelating acetate ligand and one terminal monodentate Cl atom in a distorted square-pyramidal geometry. In the crystal, adjacent mol-ecules are linked through O-H⋯Cl, N-H⋯Cl, N-H⋯O and O-H⋯O hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2010        PMID: 21588549      PMCID: PMC3008101          DOI: 10.1107/S160053681003326X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

1,2-Bis(2,2′-1H-benzimidazol)ethane (bbe) has been extensively used in the construction of complexes since it has multiple nitro­gen donors which show strong coordination ability, see: Yang et al. (2010 ▶); n class="Disease">van Albada et al. (2000 ▶). For the potential applications of copper complexes, see: Mirica et al. (2004 ▶); Zhang et al. (2008 ▶).

Experimental

Crystal data

[Cu(C2H3O2)Cl(n class="CellLine">C16H14N4)]·H2O M = 438.36 Monoclinic, a = 14.796 (3) Å b = 8.5844 (17) Å c = 15.162 (3) Å β = 108.04 (3)° V = 1831.2 (6) Å3 Z = 4 Mo Kα radiation μ = 1.37 mm−1 T = 293 K 0.22 × 0.20 × 0.19 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2006 ▶) T min = 0.753, T max = 0.781 12276 measured reflections 3573 independent reflections 3135 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.101 S = 1.07 3573 reflections 244 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.33 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2006 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681003326X/br2145sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681003326X/br2145Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C2H3O2)Cl(C16H14N4)]·H2OF(000) = 900
Mr = 438.36Dx = 1.590 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4685 reflections
a = 14.796 (3) Åθ = 2.3–27.9°
b = 8.5844 (17) ŵ = 1.37 mm1
c = 15.162 (3) ÅT = 293 K
β = 108.04 (3)°Prism, green
V = 1831.2 (6) Å30.22 × 0.20 × 0.19 mm
Z = 4
Rigaku Saturn diffractometer3573 independent reflections
Radiation source: fine-focus sealed tube3135 reflections with I > 2σ(I)
graphiteRint = 0.029
Detector resolution: 28.5714 pixels mm-1θmax = 26.0°, θmin = 2.8°
ω scansh = −18→18
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2006)k = −10→10
Tmin = 0.753, Tmax = 0.781l = −18→15
12276 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0516P)2 + 0.5788P] where P = (Fo2 + 2Fc2)/3
3573 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.23644 (2)0.50951 (3)0.26280 (2)0.03006 (13)
N10.19690 (16)0.3120 (2)0.19598 (15)0.0313 (5)
N20.19221 (17)0.0579 (3)0.17476 (17)0.0390 (6)
H2A0.2008−0.03980.18710.047*
N30.37363 (16)0.4577 (3)0.32508 (16)0.0338 (5)
N40.51000 (17)0.3474 (3)0.40310 (16)0.0398 (6)
H4A0.54990.27660.43060.048*
O10.22960 (14)0.6870 (2)0.35141 (14)0.0436 (5)
O20.10300 (14)0.5737 (2)0.26343 (13)0.0402 (5)
O30.34911 (15)0.6401 (2)0.00045 (14)0.0475 (5)
H1W0.32080.64780.03900.057*
H2W0.31630.6933−0.04250.057*
Cl10.23462 (6)0.70125 (8)0.13960 (5)0.0456 (2)
C10.15038 (18)0.2829 (3)0.10261 (18)0.0297 (6)
C20.1067 (2)0.3812 (3)0.02902 (19)0.0371 (7)
H2B0.10590.48850.03700.044*
C30.0645 (2)0.3135 (4)−0.0563 (2)0.0472 (8)
H3A0.03360.3767−0.10640.057*
C40.0669 (2)0.1537 (4)−0.0695 (2)0.0505 (8)
H4B0.03950.1128−0.12860.061*
C50.1084 (2)0.0554 (4)0.0021 (2)0.0475 (8)
H5A0.1095−0.0517−0.00670.057*
C60.14879 (19)0.1216 (3)0.08851 (19)0.0341 (6)
C70.2186 (2)0.1743 (3)0.23568 (19)0.0347 (6)
C80.2706 (2)0.1519 (3)0.3365 (2)0.0422 (7)
H8A0.25540.04980.35550.051*
H8B0.24900.22920.37210.051*
C90.3775 (2)0.1656 (3)0.3583 (2)0.0443 (8)
H9A0.40720.11640.41790.053*
H9B0.39600.10650.31210.053*
C100.4171 (2)0.3257 (3)0.36158 (19)0.0350 (6)
C110.44533 (19)0.5716 (3)0.34521 (19)0.0341 (6)
C120.4432 (2)0.7294 (3)0.3244 (2)0.0425 (7)
H12A0.38690.77880.29160.051*
C130.5285 (2)0.8104 (4)0.3544 (2)0.0510 (8)
H13A0.52900.91620.34120.061*
C140.6132 (2)0.7376 (4)0.4037 (2)0.0531 (9)
H14A0.66880.79610.42290.064*
C150.6167 (2)0.5823 (4)0.4248 (2)0.0477 (8)
H15A0.67330.53340.45740.057*
C160.5313 (2)0.5015 (3)0.3947 (2)0.0373 (7)
C170.0792 (2)0.7964 (4)0.3494 (3)0.0570 (9)
H17A0.06320.75700.40200.086*
H17B0.02210.81470.29920.086*
H17C0.11370.89230.36590.086*
C180.1398 (2)0.6794 (3)0.32005 (19)0.0370 (7)
U11U22U33U12U13U23
Cu10.0287 (2)0.0265 (2)0.0330 (2)0.00279 (13)0.00674 (14)−0.00318 (13)
N10.0321 (12)0.0269 (12)0.0326 (12)−0.0002 (10)0.0068 (10)0.0016 (9)
N20.0431 (15)0.0224 (12)0.0477 (15)−0.0004 (11)0.0084 (12)0.0008 (11)
N30.0293 (13)0.0349 (13)0.0367 (13)0.0051 (10)0.0094 (10)−0.0012 (10)
N40.0310 (13)0.0421 (14)0.0404 (14)0.0097 (11)0.0026 (10)0.0034 (11)
O10.0339 (12)0.0483 (13)0.0463 (12)0.0038 (9)0.0093 (9)−0.0152 (10)
O20.0349 (11)0.0407 (11)0.0425 (11)0.0016 (9)0.0083 (9)−0.0051 (10)
O30.0454 (13)0.0499 (13)0.0435 (12)0.0003 (10)0.0083 (10)0.0003 (10)
Cl10.0658 (5)0.0305 (4)0.0414 (4)−0.0017 (3)0.0180 (4)0.0043 (3)
C10.0261 (14)0.0266 (13)0.0374 (14)−0.0026 (11)0.0111 (11)−0.0025 (11)
C20.0356 (16)0.0307 (15)0.0403 (16)−0.0019 (12)0.0050 (12)0.0024 (12)
C30.0442 (19)0.0492 (19)0.0420 (17)−0.0032 (15)0.0044 (14)0.0054 (14)
C40.051 (2)0.056 (2)0.0385 (17)−0.0067 (16)0.0050 (14)−0.0139 (15)
C50.0467 (19)0.0378 (17)0.055 (2)−0.0022 (15)0.0107 (15)−0.0136 (15)
C60.0318 (15)0.0290 (14)0.0405 (15)0.0011 (12)0.0096 (12)−0.0041 (12)
C70.0343 (16)0.0301 (15)0.0381 (15)−0.0011 (12)0.0088 (12)0.0032 (12)
C80.0473 (19)0.0364 (16)0.0405 (16)−0.0020 (14)0.0098 (14)0.0107 (13)
C90.0460 (19)0.0359 (16)0.0437 (17)0.0075 (14)0.0031 (14)0.0076 (13)
C100.0330 (15)0.0387 (16)0.0319 (14)0.0058 (12)0.0081 (12)0.0003 (12)
C110.0264 (14)0.0387 (16)0.0363 (15)0.0014 (12)0.0082 (11)−0.0053 (12)
C120.0344 (16)0.0404 (17)0.0521 (18)0.0016 (13)0.0125 (14)−0.0040 (14)
C130.0449 (19)0.0432 (19)0.068 (2)−0.0056 (15)0.0222 (17)−0.0068 (16)
C140.0349 (18)0.063 (2)0.064 (2)−0.0098 (16)0.0190 (16)−0.0125 (18)
C150.0281 (16)0.059 (2)0.0528 (19)0.0062 (15)0.0073 (13)−0.0038 (16)
C160.0311 (15)0.0444 (18)0.0364 (15)0.0049 (13)0.0107 (12)−0.0034 (13)
C170.053 (2)0.056 (2)0.067 (2)0.0192 (17)0.0255 (18)−0.0051 (18)
C180.0407 (17)0.0375 (16)0.0349 (15)0.0069 (13)0.0150 (13)0.0021 (13)
Cu1—N11.969 (2)C4—C51.362 (4)
Cu1—N32.006 (2)C4—H4B0.9300
Cu1—O22.053 (2)C5—C61.382 (4)
Cu1—O12.0546 (19)C5—H5A0.9300
Cu1—C182.387 (3)C7—C81.496 (4)
Cu1—Cl12.4836 (8)C8—C91.517 (4)
N1—C71.320 (3)C8—H8A0.9700
N1—C11.392 (3)C8—H8B0.9700
N2—C71.335 (4)C9—C101.489 (4)
N2—C61.379 (3)C9—H9A0.9700
N2—H2A0.8600C9—H9B0.9700
N3—C101.336 (3)C11—C121.389 (4)
N3—C111.405 (4)C11—C161.397 (4)
N4—C101.336 (4)C12—C131.387 (4)
N4—C161.375 (4)C12—H12A0.9300
N4—H4A0.8600C13—C141.393 (5)
O1—C181.267 (3)C13—H13A0.9300
O2—C181.252 (3)C14—C151.368 (5)
O3—H1W0.8200C14—H14A0.9300
O3—H2W0.8199C15—C161.389 (4)
C1—C21.389 (4)C15—H15A0.9300
C1—C61.400 (4)C17—C181.502 (4)
C2—C31.378 (4)C17—H17A0.9600
C2—H2B0.9300C17—H17B0.9600
C3—C41.389 (4)C17—H17C0.9600
C3—H3A0.9300
N1—Cu1—N398.48 (9)N1—C7—N2112.2 (2)
N1—Cu1—O295.78 (9)N1—C7—C8123.8 (2)
N3—Cu1—O2153.13 (9)N2—C7—C8123.9 (2)
N1—Cu1—O1155.25 (9)C7—C8—C9112.6 (3)
N3—Cu1—O195.98 (9)C7—C8—H8A109.1
O2—Cu1—O163.62 (8)C9—C8—H8A109.1
N1—Cu1—C18126.68 (10)C7—C8—H8B109.1
N3—Cu1—C18126.69 (10)C9—C8—H8B109.1
O2—Cu1—C1831.63 (9)H8A—C8—H8B107.8
O1—Cu1—C1832.06 (9)C10—C9—C8116.9 (2)
N1—Cu1—Cl1104.57 (7)C10—C9—H9A108.1
N3—Cu1—Cl1105.94 (7)C8—C9—H9A108.1
O2—Cu1—Cl192.25 (6)C10—C9—H9B108.1
O1—Cu1—Cl190.52 (7)C8—C9—H9B108.1
C18—Cu1—Cl190.03 (7)H9A—C9—H9B107.3
C7—N1—C1106.1 (2)N4—C10—N3111.7 (3)
C7—N1—Cu1123.01 (18)N4—C10—C9118.8 (2)
C1—N1—Cu1130.73 (17)N3—C10—C9129.4 (3)
C7—N2—C6108.1 (2)C12—C11—C16119.6 (3)
C7—N2—H2A126.0C12—C11—N3131.8 (3)
C6—N2—H2A126.0C16—C11—N3108.5 (2)
C10—N3—C11105.4 (2)C13—C12—C11117.4 (3)
C10—N3—Cu1132.1 (2)C13—C12—H12A121.3
C11—N3—Cu1122.28 (18)C11—C12—H12A121.3
C10—N4—C16108.8 (2)C12—C13—C14121.8 (3)
C10—N4—H4A125.6C12—C13—H13A119.1
C16—N4—H4A125.6C14—C13—H13A119.1
C18—O1—Cu188.55 (16)C15—C14—C13121.7 (3)
C18—O2—Cu189.06 (17)C15—C14—H14A119.2
H1W—O3—H2W102.3C13—C14—H14A119.2
C2—C1—N1132.0 (2)C14—C15—C16116.4 (3)
C2—C1—C6119.8 (2)C14—C15—H15A121.8
N1—C1—C6108.2 (2)C16—C15—H15A121.8
C3—C2—C1117.5 (3)N4—C16—C15131.4 (3)
C3—C2—H2B121.3N4—C16—C11105.5 (3)
C1—C2—H2B121.3C15—C16—C11123.1 (3)
C2—C3—C4121.8 (3)C18—C17—H17A109.5
C2—C3—H3A119.1C18—C17—H17B109.5
C4—C3—H3A119.1H17A—C17—H17B109.5
C5—C4—C3121.5 (3)C18—C17—H17C109.5
C5—C4—H4B119.3H17A—C17—H17C109.5
C3—C4—H4B119.3H17B—C17—H17C109.5
C4—C5—C6117.2 (3)O2—C18—O1118.5 (3)
C4—C5—H5A121.4O2—C18—C17121.1 (3)
C6—C5—H5A121.4O1—C18—C17120.4 (3)
N2—C6—C5132.4 (3)O2—C18—Cu159.32 (14)
N2—C6—C1105.5 (2)O1—C18—Cu159.39 (14)
C5—C6—C1122.2 (3)C17—C18—Cu1174.9 (2)
D—H···AD—HH···AD···AD—H···A
O3—H1W···Cl10.822.323.132 (2)173.
N2—H2A···Cl1i0.862.443.203 (2)149.
N4—H4A···O3ii0.861.932.786 (3)172.
O3—H2W···O1iii0.822.002.822 (3)176.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H1W⋯Cl10.822.323.132 (2)173
N2—H2A⋯Cl1i0.862.443.203 (2)149
N4—H4A⋯O3ii0.861.932.786 (3)172
O3—H2W⋯O1iii0.822.002.822 (3)176

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

Review 1.  Structure and spectroscopy of copper-dioxygen complexes.

Authors:  Liviu M Mirica; Xavier Ottenwaelder; T Daniel P Stack
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  catena-Poly[[(acetato-κO,O')(methanol-κO)cadmium(II)]-μ-[1,2-bis-(1H-benzimid-azol-2-yl)ethane]-κN:N-[(acetato-κO,O')(methanol-κO)cadmium(II)]-di-μ-chlorido].

Authors:  Huai-Xia Yang; Jun Zhang; Ya-Nan Ding; Xiang-Ru Meng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-28
  3 in total
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1.  A new Ag complex based on 1-[(1H-benzimidazol-1-yl)meth-yl]-1H-1,2,4-triazole.

Authors:  Yan-Zhi Wang; Jun Zhang; Huai-Xia Yang; Xiang-Ru Meng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-19
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