| Literature DB >> 21588549 |
Yu-Xian Li, Huai-Xia Yang, Ya-Nan Ding, Xiang-Ru Meng.
Abstract
In the title complex, [Cu(CH(3)COO)Cl(C(16)H(14)N(4))]·H(2)O, the Cu(II) ion is five-coordinated by two N atoms from a 2,2'-(ethane-1,2-di-yl)di-1H-benzimidazole ligand, two O atoms from a chelating acetate ligand and one terminal monodentate Cl atom in a distorted square-pyramidal geometry. In the crystal, adjacent mol-ecules are linked through O-H⋯Cl, N-H⋯Cl, N-H⋯O and O-H⋯O hydrogen bonds into a three-dimensional network.Entities:
Year: 2010 PMID: 21588549 PMCID: PMC3008101 DOI: 10.1107/S160053681003326X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C2H3O2)Cl(C16H14N4)]·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4685 reflections |
| θ = 2.3–27.9° | |
| µ = 1.37 mm−1 | |
| β = 108.04 (3)° | Prism, green |
| 0.22 × 0.20 × 0.19 mm | |
| Rigaku Saturn diffractometer | 3573 independent reflections |
| Radiation source: fine-focus sealed tube | 3135 reflections with |
| graphite | |
| Detector resolution: 28.5714 pixels mm-1 | θmax = 26.0°, θmin = 2.8° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 12276 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3573 reflections | (Δ/σ)max < 0.001 |
| 244 parameters | Δρmax = 0.37 e Å−3 |
| 0 restraints | Δρmin = −0.33 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 0.23644 (2) | 0.50951 (3) | 0.26280 (2) | 0.03006 (13) | |
| N1 | 0.19690 (16) | 0.3120 (2) | 0.19598 (15) | 0.0313 (5) | |
| N2 | 0.19221 (17) | 0.0579 (3) | 0.17476 (17) | 0.0390 (6) | |
| H2A | 0.2008 | −0.0398 | 0.1871 | 0.047* | |
| N3 | 0.37363 (16) | 0.4577 (3) | 0.32508 (16) | 0.0338 (5) | |
| N4 | 0.51000 (17) | 0.3474 (3) | 0.40310 (16) | 0.0398 (6) | |
| H4A | 0.5499 | 0.2766 | 0.4306 | 0.048* | |
| O1 | 0.22960 (14) | 0.6870 (2) | 0.35141 (14) | 0.0436 (5) | |
| O2 | 0.10300 (14) | 0.5737 (2) | 0.26343 (13) | 0.0402 (5) | |
| O3 | 0.34911 (15) | 0.6401 (2) | 0.00045 (14) | 0.0475 (5) | |
| H1W | 0.3208 | 0.6478 | 0.0390 | 0.057* | |
| H2W | 0.3163 | 0.6933 | −0.0425 | 0.057* | |
| Cl1 | 0.23462 (6) | 0.70125 (8) | 0.13960 (5) | 0.0456 (2) | |
| C1 | 0.15038 (18) | 0.2829 (3) | 0.10261 (18) | 0.0297 (6) | |
| C2 | 0.1067 (2) | 0.3812 (3) | 0.02902 (19) | 0.0371 (7) | |
| H2B | 0.1059 | 0.4885 | 0.0370 | 0.044* | |
| C3 | 0.0645 (2) | 0.3135 (4) | −0.0563 (2) | 0.0472 (8) | |
| H3A | 0.0336 | 0.3767 | −0.1064 | 0.057* | |
| C4 | 0.0669 (2) | 0.1537 (4) | −0.0695 (2) | 0.0505 (8) | |
| H4B | 0.0395 | 0.1128 | −0.1286 | 0.061* | |
| C5 | 0.1084 (2) | 0.0554 (4) | 0.0021 (2) | 0.0475 (8) | |
| H5A | 0.1095 | −0.0517 | −0.0067 | 0.057* | |
| C6 | 0.14879 (19) | 0.1216 (3) | 0.08851 (19) | 0.0341 (6) | |
| C7 | 0.2186 (2) | 0.1743 (3) | 0.23568 (19) | 0.0347 (6) | |
| C8 | 0.2706 (2) | 0.1519 (3) | 0.3365 (2) | 0.0422 (7) | |
| H8A | 0.2554 | 0.0498 | 0.3555 | 0.051* | |
| H8B | 0.2490 | 0.2292 | 0.3721 | 0.051* | |
| C9 | 0.3775 (2) | 0.1656 (3) | 0.3583 (2) | 0.0443 (8) | |
| H9A | 0.4072 | 0.1164 | 0.4179 | 0.053* | |
| H9B | 0.3960 | 0.1065 | 0.3121 | 0.053* | |
| C10 | 0.4171 (2) | 0.3257 (3) | 0.36158 (19) | 0.0350 (6) | |
| C11 | 0.44533 (19) | 0.5716 (3) | 0.34521 (19) | 0.0341 (6) | |
| C12 | 0.4432 (2) | 0.7294 (3) | 0.3244 (2) | 0.0425 (7) | |
| H12A | 0.3869 | 0.7788 | 0.2916 | 0.051* | |
| C13 | 0.5285 (2) | 0.8104 (4) | 0.3544 (2) | 0.0510 (8) | |
| H13A | 0.5290 | 0.9162 | 0.3412 | 0.061* | |
| C14 | 0.6132 (2) | 0.7376 (4) | 0.4037 (2) | 0.0531 (9) | |
| H14A | 0.6688 | 0.7961 | 0.4229 | 0.064* | |
| C15 | 0.6167 (2) | 0.5823 (4) | 0.4248 (2) | 0.0477 (8) | |
| H15A | 0.6733 | 0.5334 | 0.4574 | 0.057* | |
| C16 | 0.5313 (2) | 0.5015 (3) | 0.3947 (2) | 0.0373 (7) | |
| C17 | 0.0792 (2) | 0.7964 (4) | 0.3494 (3) | 0.0570 (9) | |
| H17A | 0.0632 | 0.7570 | 0.4020 | 0.086* | |
| H17B | 0.0221 | 0.8147 | 0.2992 | 0.086* | |
| H17C | 0.1137 | 0.8923 | 0.3659 | 0.086* | |
| C18 | 0.1398 (2) | 0.6794 (3) | 0.32005 (19) | 0.0370 (7) |
| Cu1 | 0.0287 (2) | 0.0265 (2) | 0.0330 (2) | 0.00279 (13) | 0.00674 (14) | −0.00318 (13) |
| N1 | 0.0321 (12) | 0.0269 (12) | 0.0326 (12) | −0.0002 (10) | 0.0068 (10) | 0.0016 (9) |
| N2 | 0.0431 (15) | 0.0224 (12) | 0.0477 (15) | −0.0004 (11) | 0.0084 (12) | 0.0008 (11) |
| N3 | 0.0293 (13) | 0.0349 (13) | 0.0367 (13) | 0.0051 (10) | 0.0094 (10) | −0.0012 (10) |
| N4 | 0.0310 (13) | 0.0421 (14) | 0.0404 (14) | 0.0097 (11) | 0.0026 (10) | 0.0034 (11) |
| O1 | 0.0339 (12) | 0.0483 (13) | 0.0463 (12) | 0.0038 (9) | 0.0093 (9) | −0.0152 (10) |
| O2 | 0.0349 (11) | 0.0407 (11) | 0.0425 (11) | 0.0016 (9) | 0.0083 (9) | −0.0051 (10) |
| O3 | 0.0454 (13) | 0.0499 (13) | 0.0435 (12) | 0.0003 (10) | 0.0083 (10) | 0.0003 (10) |
| Cl1 | 0.0658 (5) | 0.0305 (4) | 0.0414 (4) | −0.0017 (3) | 0.0180 (4) | 0.0043 (3) |
| C1 | 0.0261 (14) | 0.0266 (13) | 0.0374 (14) | −0.0026 (11) | 0.0111 (11) | −0.0025 (11) |
| C2 | 0.0356 (16) | 0.0307 (15) | 0.0403 (16) | −0.0019 (12) | 0.0050 (12) | 0.0024 (12) |
| C3 | 0.0442 (19) | 0.0492 (19) | 0.0420 (17) | −0.0032 (15) | 0.0044 (14) | 0.0054 (14) |
| C4 | 0.051 (2) | 0.056 (2) | 0.0385 (17) | −0.0067 (16) | 0.0050 (14) | −0.0139 (15) |
| C5 | 0.0467 (19) | 0.0378 (17) | 0.055 (2) | −0.0022 (15) | 0.0107 (15) | −0.0136 (15) |
| C6 | 0.0318 (15) | 0.0290 (14) | 0.0405 (15) | 0.0011 (12) | 0.0096 (12) | −0.0041 (12) |
| C7 | 0.0343 (16) | 0.0301 (15) | 0.0381 (15) | −0.0011 (12) | 0.0088 (12) | 0.0032 (12) |
| C8 | 0.0473 (19) | 0.0364 (16) | 0.0405 (16) | −0.0020 (14) | 0.0098 (14) | 0.0107 (13) |
| C9 | 0.0460 (19) | 0.0359 (16) | 0.0437 (17) | 0.0075 (14) | 0.0031 (14) | 0.0076 (13) |
| C10 | 0.0330 (15) | 0.0387 (16) | 0.0319 (14) | 0.0058 (12) | 0.0081 (12) | 0.0003 (12) |
| C11 | 0.0264 (14) | 0.0387 (16) | 0.0363 (15) | 0.0014 (12) | 0.0082 (11) | −0.0053 (12) |
| C12 | 0.0344 (16) | 0.0404 (17) | 0.0521 (18) | 0.0016 (13) | 0.0125 (14) | −0.0040 (14) |
| C13 | 0.0449 (19) | 0.0432 (19) | 0.068 (2) | −0.0056 (15) | 0.0222 (17) | −0.0068 (16) |
| C14 | 0.0349 (18) | 0.063 (2) | 0.064 (2) | −0.0098 (16) | 0.0190 (16) | −0.0125 (18) |
| C15 | 0.0281 (16) | 0.059 (2) | 0.0528 (19) | 0.0062 (15) | 0.0073 (13) | −0.0038 (16) |
| C16 | 0.0311 (15) | 0.0444 (18) | 0.0364 (15) | 0.0049 (13) | 0.0107 (12) | −0.0034 (13) |
| C17 | 0.053 (2) | 0.056 (2) | 0.067 (2) | 0.0192 (17) | 0.0255 (18) | −0.0051 (18) |
| C18 | 0.0407 (17) | 0.0375 (16) | 0.0349 (15) | 0.0069 (13) | 0.0150 (13) | 0.0021 (13) |
| Cu1—N1 | 1.969 (2) | C4—C5 | 1.362 (4) |
| Cu1—N3 | 2.006 (2) | C4—H4B | 0.9300 |
| Cu1—O2 | 2.053 (2) | C5—C6 | 1.382 (4) |
| Cu1—O1 | 2.0546 (19) | C5—H5A | 0.9300 |
| Cu1—C18 | 2.387 (3) | C7—C8 | 1.496 (4) |
| Cu1—Cl1 | 2.4836 (8) | C8—C9 | 1.517 (4) |
| N1—C7 | 1.320 (3) | C8—H8A | 0.9700 |
| N1—C1 | 1.392 (3) | C8—H8B | 0.9700 |
| N2—C7 | 1.335 (4) | C9—C10 | 1.489 (4) |
| N2—C6 | 1.379 (3) | C9—H9A | 0.9700 |
| N2—H2A | 0.8600 | C9—H9B | 0.9700 |
| N3—C10 | 1.336 (3) | C11—C12 | 1.389 (4) |
| N3—C11 | 1.405 (4) | C11—C16 | 1.397 (4) |
| N4—C10 | 1.336 (4) | C12—C13 | 1.387 (4) |
| N4—C16 | 1.375 (4) | C12—H12A | 0.9300 |
| N4—H4A | 0.8600 | C13—C14 | 1.393 (5) |
| O1—C18 | 1.267 (3) | C13—H13A | 0.9300 |
| O2—C18 | 1.252 (3) | C14—C15 | 1.368 (5) |
| O3—H1W | 0.8200 | C14—H14A | 0.9300 |
| O3—H2W | 0.8199 | C15—C16 | 1.389 (4) |
| C1—C2 | 1.389 (4) | C15—H15A | 0.9300 |
| C1—C6 | 1.400 (4) | C17—C18 | 1.502 (4) |
| C2—C3 | 1.378 (4) | C17—H17A | 0.9600 |
| C2—H2B | 0.9300 | C17—H17B | 0.9600 |
| C3—C4 | 1.389 (4) | C17—H17C | 0.9600 |
| C3—H3A | 0.9300 | ||
| N1—Cu1—N3 | 98.48 (9) | N1—C7—N2 | 112.2 (2) |
| N1—Cu1—O2 | 95.78 (9) | N1—C7—C8 | 123.8 (2) |
| N3—Cu1—O2 | 153.13 (9) | N2—C7—C8 | 123.9 (2) |
| N1—Cu1—O1 | 155.25 (9) | C7—C8—C9 | 112.6 (3) |
| N3—Cu1—O1 | 95.98 (9) | C7—C8—H8A | 109.1 |
| O2—Cu1—O1 | 63.62 (8) | C9—C8—H8A | 109.1 |
| N1—Cu1—C18 | 126.68 (10) | C7—C8—H8B | 109.1 |
| N3—Cu1—C18 | 126.69 (10) | C9—C8—H8B | 109.1 |
| O2—Cu1—C18 | 31.63 (9) | H8A—C8—H8B | 107.8 |
| O1—Cu1—C18 | 32.06 (9) | C10—C9—C8 | 116.9 (2) |
| N1—Cu1—Cl1 | 104.57 (7) | C10—C9—H9A | 108.1 |
| N3—Cu1—Cl1 | 105.94 (7) | C8—C9—H9A | 108.1 |
| O2—Cu1—Cl1 | 92.25 (6) | C10—C9—H9B | 108.1 |
| O1—Cu1—Cl1 | 90.52 (7) | C8—C9—H9B | 108.1 |
| C18—Cu1—Cl1 | 90.03 (7) | H9A—C9—H9B | 107.3 |
| C7—N1—C1 | 106.1 (2) | N4—C10—N3 | 111.7 (3) |
| C7—N1—Cu1 | 123.01 (18) | N4—C10—C9 | 118.8 (2) |
| C1—N1—Cu1 | 130.73 (17) | N3—C10—C9 | 129.4 (3) |
| C7—N2—C6 | 108.1 (2) | C12—C11—C16 | 119.6 (3) |
| C7—N2—H2A | 126.0 | C12—C11—N3 | 131.8 (3) |
| C6—N2—H2A | 126.0 | C16—C11—N3 | 108.5 (2) |
| C10—N3—C11 | 105.4 (2) | C13—C12—C11 | 117.4 (3) |
| C10—N3—Cu1 | 132.1 (2) | C13—C12—H12A | 121.3 |
| C11—N3—Cu1 | 122.28 (18) | C11—C12—H12A | 121.3 |
| C10—N4—C16 | 108.8 (2) | C12—C13—C14 | 121.8 (3) |
| C10—N4—H4A | 125.6 | C12—C13—H13A | 119.1 |
| C16—N4—H4A | 125.6 | C14—C13—H13A | 119.1 |
| C18—O1—Cu1 | 88.55 (16) | C15—C14—C13 | 121.7 (3) |
| C18—O2—Cu1 | 89.06 (17) | C15—C14—H14A | 119.2 |
| H1W—O3—H2W | 102.3 | C13—C14—H14A | 119.2 |
| C2—C1—N1 | 132.0 (2) | C14—C15—C16 | 116.4 (3) |
| C2—C1—C6 | 119.8 (2) | C14—C15—H15A | 121.8 |
| N1—C1—C6 | 108.2 (2) | C16—C15—H15A | 121.8 |
| C3—C2—C1 | 117.5 (3) | N4—C16—C15 | 131.4 (3) |
| C3—C2—H2B | 121.3 | N4—C16—C11 | 105.5 (3) |
| C1—C2—H2B | 121.3 | C15—C16—C11 | 123.1 (3) |
| C2—C3—C4 | 121.8 (3) | C18—C17—H17A | 109.5 |
| C2—C3—H3A | 119.1 | C18—C17—H17B | 109.5 |
| C4—C3—H3A | 119.1 | H17A—C17—H17B | 109.5 |
| C5—C4—C3 | 121.5 (3) | C18—C17—H17C | 109.5 |
| C5—C4—H4B | 119.3 | H17A—C17—H17C | 109.5 |
| C3—C4—H4B | 119.3 | H17B—C17—H17C | 109.5 |
| C4—C5—C6 | 117.2 (3) | O2—C18—O1 | 118.5 (3) |
| C4—C5—H5A | 121.4 | O2—C18—C17 | 121.1 (3) |
| C6—C5—H5A | 121.4 | O1—C18—C17 | 120.4 (3) |
| N2—C6—C5 | 132.4 (3) | O2—C18—Cu1 | 59.32 (14) |
| N2—C6—C1 | 105.5 (2) | O1—C18—Cu1 | 59.39 (14) |
| C5—C6—C1 | 122.2 (3) | C17—C18—Cu1 | 174.9 (2) |
| H··· | ||||
| O3—H1W···Cl1 | 0.82 | 2.32 | 3.132 (2) | 173. |
| N2—H2A···Cl1i | 0.86 | 2.44 | 3.203 (2) | 149. |
| N4—H4A···O3ii | 0.86 | 1.93 | 2.786 (3) | 172. |
| O3—H2W···O1iii | 0.82 | 2.00 | 2.822 (3) | 176. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H1 | 0.82 | 2.32 | 3.132 (2) | 173 |
| N2—H2 | 0.86 | 2.44 | 3.203 (2) | 149 |
| N4—H4 | 0.86 | 1.93 | 2.786 (3) | 172 |
| O3—H2 | 0.82 | 2.00 | 2.822 (3) | 176 |
Symmetry codes: (i) ; (ii) ; (iii) .