Literature DB >> 21588519

Aqua-chlorido{2-[2-(cyclo-hexyl-carbamo-thioyl-κS)hydrazinyl-idene-κN]propano-ato(2-)}phenyl-tin(IV).

Md Abu Affan, Md Abdus Salam, Ismail Jusoh, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title organotin compound, [Sn(C(6)H(5))(C(10)H(15)N(3)O(2)S)Cl(H(2)O)], the Sn atom is coordinated by the S, O, and imine N atoms of the dinegative tridentate ligand, a chloride ligand, the ipso-C atom of a phenyl ligand and by a water mol-ecule in a distorted octa-hedral coordination environment. Coordin-ated water mol-ecules link the organotin mol-ecules by forming O-H⋯O hydrogen bonds with both carbonyl and carboxyl-ate O atoms, leading to 12-membered {⋯OCO⋯HOH⋯}(2) synthons. This results in the formation of supra-molecular chains along the c axis. The chains pack in the ac plane and stack along the b axis with links between layers afforded by N-H⋯Cl hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588519      PMCID: PMC3007908          DOI: 10.1107/S1600536810031715

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of tin/organotin compounds, see: Gielen & Tiekink (2005 ▶). For related studies on organotin compounds, see: Affan et al. (2009 ▶); Zukerman-Schpector et al. (2009 ▶); Affan et al. (2010 ▶).

Experimental

Crystal data

[Sn(C6H5)(C10H15N3O2S)Cl(H2O)] M = 490.57 Monoclinic, a = 16.3904 (9) Å b = 19.2018 (10) Å c = 13.1127 (7) Å β = 108.4421 (7)° V = 3915.0 (4) Å3 Z = 8 Mo Kα radiation μ = 1.57 mm−1 T = 100 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.613, T max = 0.746 18020 measured reflections 4498 independent reflections 3853 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.091 S = 1.19 4498 reflections 239 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.54 e Å−3 Δρmin = −0.53 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810031715/lh5114sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810031715/lh5114Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Sn(C6H5)(C10H15N3O2S)Cl(H2O)]F(000) = 1968
Mr = 490.57Dx = 1.665 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 8808 reflections
a = 16.3904 (9) Åθ = 2.6–28.3°
b = 19.2018 (10) ŵ = 1.57 mm1
c = 13.1127 (7) ÅT = 100 K
β = 108.4421 (7)°Block, light-brown
V = 3915.0 (4) Å30.30 × 0.25 × 0.20 mm
Z = 8
Bruker SMART APEX diffractometer4498 independent reflections
Radiation source: fine-focus sealed tube3853 reflections with I > 2σ(I)
graphiteRint = 0.034
ω scanθmax = 27.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −21→21
Tmin = 0.613, Tmax = 0.746k = −24→24
18020 measured reflectionsl = −16→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H atoms treated by a mixture of independent and constrained refinement
S = 1.19w = 1/[σ2(Fo2) + (0.05P)2 + 0.5P] where P = (Fo2 + 2Fc2)/3
4498 reflections(Δ/σ)max = 0.001
239 parametersΔρmax = 0.54 e Å3
3 restraintsΔρmin = −0.53 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Sn0.404486 (12)0.620716 (10)0.467538 (16)0.01146 (8)
Cl10.34899 (5)0.69580 (4)0.30936 (6)0.01767 (16)
S10.32710 (5)0.68215 (4)0.57359 (6)0.01380 (16)
O10.41904 (13)0.54024 (11)0.36085 (18)0.0163 (5)
O20.34146 (15)0.47501 (12)0.22370 (19)0.0209 (5)
O1W0.43443 (15)0.53800 (13)0.5926 (2)0.0201 (5)
H1W0.475 (3)0.512 (3)0.590 (5)0.09 (2)*
H2W0.406 (3)0.531 (3)0.634 (3)0.066 (17)*
N10.16705 (17)0.65474 (14)0.5583 (2)0.0158 (5)
H1N0.176 (2)0.6892 (13)0.602 (2)0.019 (10)*
N20.21381 (16)0.58361 (13)0.4501 (2)0.0151 (5)
N30.27999 (16)0.56696 (13)0.4134 (2)0.0140 (5)
C10.0801 (2)0.62496 (16)0.5200 (3)0.0182 (7)
H1A0.08520.57350.51190.022*
C20.0277 (2)0.6546 (2)0.4129 (3)0.0275 (8)
H2A0.05760.64590.35930.033*
H2B0.02190.70560.41950.033*
C3−0.0616 (3)0.6211 (3)0.3750 (4)0.0455 (12)
H3A−0.09580.64220.30580.055*
H3B−0.05580.57070.36300.055*
C4−0.1082 (2)0.6313 (2)0.4576 (4)0.0354 (10)
H4A−0.12070.68150.46250.042*
H4B−0.16370.60610.43390.042*
C5−0.0553 (2)0.6053 (2)0.5669 (4)0.0324 (9)
H5A−0.04960.55400.56440.039*
H5B−0.08520.61630.61970.039*
C60.0344 (2)0.63821 (19)0.6035 (3)0.0230 (7)
H6A0.02940.68900.61330.028*
H6B0.06870.61810.67350.028*
C70.2306 (2)0.63535 (16)0.5207 (3)0.0140 (6)
C80.27078 (19)0.52131 (16)0.3388 (2)0.0147 (6)
C90.1909 (2)0.48168 (17)0.2862 (3)0.0204 (7)
H9A0.14280.50300.30410.031*
H9B0.19820.43340.31160.031*
H9C0.17890.48250.20810.031*
C100.34849 (19)0.51063 (16)0.3033 (3)0.0155 (6)
C110.53637 (18)0.64917 (15)0.5141 (2)0.0131 (6)
C120.5831 (2)0.66164 (17)0.6212 (3)0.0198 (7)
H12A0.55580.65840.67500.024*
C130.6698 (2)0.67889 (19)0.6493 (3)0.0226 (7)
H130.70130.68840.72220.027*
C140.7103 (2)0.68218 (19)0.5720 (3)0.0230 (7)
H140.76970.69350.59190.028*
C150.6644 (2)0.66898 (18)0.4644 (3)0.0221 (7)
H150.69230.67080.41120.027*
C160.5775 (2)0.65323 (17)0.4362 (3)0.0187 (7)
H160.54570.64510.36290.022*
U11U22U33U12U13U23
Sn0.01020 (12)0.01204 (12)0.01312 (13)0.00088 (7)0.00509 (8)−0.00039 (7)
Cl10.0226 (4)0.0173 (4)0.0131 (4)0.0036 (3)0.0056 (3)0.0019 (3)
S10.0125 (3)0.0155 (4)0.0143 (4)0.0011 (3)0.0054 (3)−0.0021 (3)
O10.0140 (10)0.0154 (11)0.0216 (12)−0.0001 (8)0.0087 (9)−0.0032 (9)
O20.0226 (12)0.0207 (12)0.0239 (13)−0.0031 (9)0.0137 (10)−0.0074 (10)
O1W0.0162 (11)0.0218 (12)0.0270 (13)0.0088 (9)0.0137 (10)0.0105 (10)
N10.0133 (12)0.0166 (14)0.0200 (14)0.0002 (10)0.0089 (11)−0.0040 (11)
N20.0128 (12)0.0174 (13)0.0187 (14)0.0013 (10)0.0099 (10)−0.0015 (11)
N30.0147 (12)0.0135 (12)0.0163 (13)0.0017 (10)0.0083 (10)0.0009 (10)
C10.0138 (15)0.0158 (16)0.0284 (19)−0.0014 (11)0.0117 (14)−0.0014 (13)
C20.0185 (17)0.045 (2)0.0203 (18)−0.0013 (15)0.0084 (14)−0.0053 (16)
C30.021 (2)0.078 (4)0.035 (3)−0.0079 (19)0.0054 (17)−0.024 (2)
C40.0161 (17)0.045 (3)0.048 (3)−0.0062 (16)0.0146 (17)−0.0146 (19)
C50.0234 (19)0.0272 (19)0.056 (3)−0.0001 (15)0.0258 (19)0.0030 (18)
C60.0174 (16)0.0292 (18)0.0270 (19)0.0058 (14)0.0136 (14)0.0069 (15)
C70.0163 (15)0.0127 (14)0.0148 (15)0.0012 (11)0.0073 (12)0.0023 (12)
C80.0147 (14)0.0155 (15)0.0151 (15)0.0018 (11)0.0066 (12)−0.0004 (12)
C90.0184 (16)0.0188 (17)0.0260 (18)−0.0035 (13)0.0100 (14)−0.0066 (14)
C100.0165 (15)0.0137 (15)0.0184 (16)0.0006 (12)0.0085 (12)0.0009 (12)
C110.0113 (13)0.0123 (14)0.0164 (15)0.0010 (11)0.0056 (11)0.0023 (12)
C120.0166 (15)0.0265 (18)0.0186 (17)−0.0005 (13)0.0090 (13)0.0020 (14)
C130.0179 (16)0.034 (2)0.0126 (16)−0.0060 (14)−0.0001 (13)0.0006 (14)
C140.0123 (15)0.0324 (19)0.0227 (18)−0.0044 (13)0.0034 (13)0.0030 (15)
C150.0147 (15)0.0342 (19)0.0198 (17)−0.0017 (14)0.0088 (13)0.0030 (15)
C160.0162 (15)0.0255 (18)0.0138 (16)0.0002 (13)0.0042 (12)−0.0013 (13)
Sn—C112.123 (3)C3—H3B0.9900
Sn—O12.148 (2)C4—C51.506 (6)
Sn—N32.195 (3)C4—H4A0.9900
Sn—O1w2.224 (2)C4—H4B0.9900
Sn—Cl12.4524 (8)C5—C61.532 (5)
Sn—S12.4598 (7)C5—H5A0.9900
S1—C71.759 (3)C5—H5B0.9900
O1—C101.295 (4)C6—H6A0.9900
O2—C101.223 (4)C6—H6B0.9900
O1W—H1W0.84 (5)C8—C91.482 (4)
O1W—H2W0.83 (5)C8—C101.502 (4)
N1—C71.339 (4)C9—H9A0.9800
N1—C11.469 (4)C9—H9B0.9800
N1—H1N0.86 (3)C9—H9C0.9800
N2—C71.326 (4)C11—C121.391 (4)
N2—N31.357 (3)C11—C161.392 (4)
N3—C81.286 (4)C12—C131.390 (4)
C1—C21.507 (5)C12—H12A0.9500
C1—C61.530 (4)C13—C141.377 (5)
C1—H1A1.0000C13—H130.9500
C2—C31.531 (5)C14—C151.395 (5)
C2—H2A0.9900C14—H140.9500
C2—H2B0.9900C15—C161.387 (4)
C3—C41.524 (6)C15—H150.9500
C3—H3A0.9900C16—H160.9500
C11—Sn—O193.42 (10)C5—C4—H4B109.3
C11—Sn—N3166.35 (10)C3—C4—H4B109.3
O1—Sn—N374.60 (9)H4A—C4—H4B108.0
C11—Sn—O1W90.27 (10)C4—C5—C6111.6 (3)
O1—Sn—O1W85.55 (9)C4—C5—H5A109.3
N3—Sn—O1W82.43 (9)C6—C5—H5A109.3
C11—Sn—Cl199.40 (8)C4—C5—H5B109.3
O1—Sn—Cl187.71 (6)C6—C5—H5B109.3
N3—Sn—Cl186.84 (7)H5A—C5—H5B108.0
O1W—Sn—Cl1168.53 (7)C1—C6—C5110.2 (3)
C11—Sn—S1111.98 (8)C1—C6—H6A109.6
O1—Sn—S1153.73 (6)C5—C6—H6A109.6
N3—Sn—S179.37 (7)C1—C6—H6B109.6
O1W—Sn—S187.63 (6)C5—C6—H6B109.6
Cl1—Sn—S194.39 (3)H6A—C6—H6B108.1
C7—S1—Sn95.30 (10)N2—C7—N1116.8 (3)
C10—O1—Sn115.62 (18)N2—C7—S1128.3 (2)
Sn—O1W—H1W113 (4)N1—C7—S1114.8 (2)
Sn—O1W—H2W124 (4)N3—C8—C9125.3 (3)
H1W—O1W—H2W123 (5)N3—C8—C10114.9 (3)
C7—N1—C1123.4 (3)C9—C8—C10119.8 (3)
C7—N1—H1N119 (3)C8—C9—H9A109.5
C1—N1—H1N118 (2)C8—C9—H9B109.5
C7—N2—N3114.3 (2)H9A—C9—H9B109.5
C8—N3—N2121.0 (3)C8—C9—H9C109.5
C8—N3—Sn116.1 (2)H9A—C9—H9C109.5
N2—N3—Sn122.70 (19)H9B—C9—H9C109.5
N1—C1—C2112.1 (3)O2—C10—O1124.6 (3)
N1—C1—C6109.4 (3)O2—C10—C8118.7 (3)
C2—C1—C6109.9 (3)O1—C10—C8116.6 (3)
N1—C1—H1A108.4C12—C11—C16119.4 (3)
C2—C1—H1A108.4C12—C11—Sn121.3 (2)
C6—C1—H1A108.4C16—C11—Sn119.2 (2)
C1—C2—C3110.4 (3)C13—C12—C11119.9 (3)
C1—C2—H2A109.6C13—C12—H12A120.0
C3—C2—H2A109.6C11—C12—H12A120.0
C1—C2—H2B109.6C14—C13—C12120.4 (3)
C3—C2—H2B109.6C14—C13—H13119.8
H2A—C2—H2B108.1C12—C13—H13119.8
C4—C3—C2111.0 (3)C13—C14—C15120.3 (3)
C4—C3—H3A109.4C13—C14—H14119.9
C2—C3—H3A109.4C15—C14—H14119.9
C4—C3—H3B109.4C16—C15—C14119.3 (3)
C2—C3—H3B109.4C16—C15—H15120.3
H3A—C3—H3B108.0C14—C15—H15120.3
C5—C4—C3111.5 (3)C15—C16—C11120.7 (3)
C5—C4—H4A109.3C15—C16—H16119.7
C3—C4—H4A109.3C11—C16—H16119.7
C11—Sn—S1—C7−173.02 (13)N3—N2—C7—S1−1.7 (4)
O1—Sn—S1—C7−8.72 (18)C1—N1—C7—N2−4.2 (5)
N3—Sn—S1—C7−0.95 (12)C1—N1—C7—S1176.4 (2)
O1W—Sn—S1—C7−83.69 (12)Sn—S1—C7—N21.9 (3)
Cl1—Sn—S1—C785.00 (10)Sn—S1—C7—N1−178.8 (2)
C11—Sn—O1—C10−173.8 (2)N2—N3—C8—C9−0.9 (5)
N3—Sn—O1—C1012.9 (2)Sn—N3—C8—C9−176.5 (2)
O1W—Sn—O1—C1096.2 (2)N2—N3—C8—C10177.5 (3)
Cl1—Sn—O1—C10−74.5 (2)Sn—N3—C8—C101.9 (3)
S1—Sn—O1—C1020.8 (3)Sn—O1—C10—O2164.0 (3)
C7—N2—N3—C8−174.9 (3)Sn—O1—C10—C8−16.3 (3)
C7—N2—N3—Sn0.4 (4)N3—C8—C10—O2−170.7 (3)
C11—Sn—N3—C8−36.8 (6)C9—C8—C10—O27.9 (5)
O1—Sn—N3—C8−7.6 (2)N3—C8—C10—O19.6 (4)
O1W—Sn—N3—C8−95.0 (2)C9—C8—C10—O1−171.9 (3)
Cl1—Sn—N3—C880.9 (2)O1—Sn—C11—C12−135.8 (3)
S1—Sn—N3—C8176.0 (2)N3—Sn—C11—C12−107.6 (5)
C11—Sn—N3—N2147.7 (4)O1W—Sn—C11—C12−50.2 (3)
O1—Sn—N3—N2176.9 (2)Cl1—Sn—C11—C12136.0 (2)
O1W—Sn—N3—N289.5 (2)S1—Sn—C11—C1237.3 (3)
Cl1—Sn—N3—N2−94.6 (2)O1—Sn—C11—C1642.1 (3)
S1—Sn—N3—N20.5 (2)N3—Sn—C11—C1670.3 (5)
C7—N1—C1—C2−77.7 (4)O1W—Sn—C11—C16127.7 (3)
C7—N1—C1—C6160.1 (3)Cl1—Sn—C11—C16−46.1 (3)
N1—C1—C2—C3178.8 (3)S1—Sn—C11—C16−144.8 (2)
C6—C1—C2—C3−59.3 (4)C16—C11—C12—C130.9 (5)
C1—C2—C3—C457.3 (5)Sn—C11—C12—C13178.8 (3)
C2—C3—C4—C5−54.5 (5)C11—C12—C13—C14−1.5 (5)
C3—C4—C5—C654.2 (5)C12—C13—C14—C150.7 (6)
N1—C1—C6—C5−178.0 (3)C13—C14—C15—C160.7 (5)
C2—C1—C6—C558.5 (4)C14—C15—C16—C11−1.3 (5)
C4—C5—C6—C1−56.1 (4)C12—C11—C16—C150.5 (5)
N3—N2—C7—N1178.9 (3)Sn—C11—C16—C15−177.5 (3)
D—H···AD—HH···AD···AD—H···A
O1w—H1w···O1i0.84 (5)1.94 (3)2.733 (3)159 (6)
O1w—H2w···O2ii0.83 (5)1.81 (2)2.645 (3)174 (5)
N1—H1n···Cl1iii0.86 (3)2.587 (16)3.407 (3)161 (3)
Table 1

Selected bond lengths (Å)

Sn—C112.123 (3)
Sn—O12.148 (2)
Sn—N32.195 (3)
Sn—O1w2.224 (2)
Sn—Cl12.4524 (8)
Sn—S12.4598 (7)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1w—H1w⋯O1i0.84 (5)1.94 (3)2.733 (3)159 (6)
O1w—H2w⋯O2ii0.83 (5)1.81 (2)2.645 (3)174 (5)
N1—H1n⋯Cl1iii0.86 (3)2.59 (2)3.407 (3)161 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1,5-Bis[(E)-1-(2-hydroxy-phen-yl)ethyl-idene]carbonohydrazide dimethyl sulfoxide solvate.

Authors:  Julio Zukerman-Schpector; Md Abu Affan; Siong Wan Foo; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-31

3.  {4-Hy-droxy-N'-[(2-oxido-1-naphthyl-κO)methyl-idene]benzohydrazidato-κN',O}dimethyl-tin(IV).

Authors:  Md Abu Affan; Norrihan B Sam; Fasihuddin B Ahmad; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-14
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.