Literature DB >> 21588516

Poly[[tetra-kis-(μ(2)-pyrazine N,N'-dioxide-κO:O')dysprosium(III)] tris-(perchlorate)].

Benjamin G Quinn-Elmore1, James D Buchner, Keith B Beach, Jacqueline M Knaust.   

Abstract

The title three-dimensional coordination network, {[Dy(C(4)H(4)N(2)O(2))(4)](ClO(4))(3)}(n), is isostructural of other lanthanides. The Dy(+3 )cation lies on a fourfold roto-inversion axis. It is coordinated in a distorted square-anti-prismatic fashion by eight O atoms from bridging pyrazine N,N'-dioxide ligands. There are two unique pyrazine N,N'-dioxide ligands. One ring is located around an inversion center, and there is a a twofold rotation axis at the center of the other ring. There are also two unique perchlorate anions. One is centered on a twofold rotation axis and the other on a fourfold roto-inversion axis. The perchlorate anions are located in channels that run perpendicular to (001) and (110) and inter-act with the coordination network through C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588516      PMCID: PMC3007906          DOI: 10.1107/S160053681003182X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isostructural La, Ce, Pr, Sm, Eu, Gd, Tb and Y coordination networks, see: Sun et al. (2004 ▶). For the isostructural Nd, Ho and Er coordination networks, see: Quinn-Elmore et al. (2010 ▶); Buchner et al. (2010a ▶,b ▶), respectively. Detailed background to this study is given in the first article of this series by Quinn-Elmore et al. (2010 ▶).

Experimental

Crystal data

[Dy(C4H4N2O2)4](ClO4)3 M = 909.22 Tetragonal, a = 15.2553 (4) Å c = 22.6667 (12) Å V = 5275.1 (3) Å3 Z = 8 Mo Kα radiation μ = 3.25 mm−1 T = 100 K 0.34 × 0.27 × 0.20 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.374, T max = 0.532 8476 measured reflections 1800 independent reflections 1493 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.096 S = 0.99 1800 reflections 110 parameters H-atom parameters constrained Δρmax = 2.68 e Å−3 Δρmin = −1.48 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT-Plus (Bruker, 2007 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: X-SEED. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681003182X/zl2299sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681003182X/zl2299Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Dy(C4H4N2O2)4](ClO4)3Dx = 2.290 Mg m3
Mr = 909.22Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41/acdCell parameters from 4338 reflections
Hall symbol: -I 4bd 2cθ = 2.7–30.5°
a = 15.2553 (4) ŵ = 3.25 mm1
c = 22.6667 (12) ÅT = 100 K
V = 5275.1 (3) Å3Block, colourless
Z = 80.34 × 0.27 × 0.20 mm
F(000) = 3560
Bruker SMART APEX CCD diffractometer1800 independent reflections
Radiation source: fine-focus sealed tube1493 reflections with I > 2σ(I)
graphiteRint = 0.018
ω scansθmax = 30.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −21→19
Tmin = 0.374, Tmax = 0.532k = −3→21
8476 measured reflectionsl = −20→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.0554P)2 + 37.1849P] where P = (Fo2 + 2Fc2)/3
1800 reflections(Δ/σ)max < 0.001
110 parametersΔρmax = 2.68 e Å3
0 restraintsΔρmin = −1.48 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Dy10.50000.25000.37500.00560 (12)
Cl10.50000.25000.12500.0113 (4)
Cl20.72654 (6)−0.02346 (6)0.12500.0281 (3)
O10.59121 (12)0.21876 (14)0.29510 (10)0.0155 (4)
O20.53217 (14)0.39451 (12)0.34383 (10)0.0153 (4)
O30.57642 (16)0.24419 (16)0.16207 (12)0.0251 (6)
O40.6466 (4)−0.0162 (4)0.1506 (4)0.137 (3)
O50.7912 (4)−0.0056 (4)0.1658 (4)0.129 (3)
N10.66943 (16)0.23424 (16)0.27415 (13)0.0143 (5)
N20.52711 (16)0.44491 (15)0.29779 (12)0.0126 (5)
C10.70896 (18)0.17248 (18)0.24020 (14)0.0151 (6)
H10.68070.11790.23350.018*
C20.78920 (18)0.18838 (18)0.21566 (14)0.0150 (6)
H20.81610.14530.19140.018*
C30.5260 (2)0.41183 (17)0.24253 (15)0.0158 (6)
H30.52520.35010.23680.019*
C40.52588 (19)0.46669 (17)0.19470 (15)0.0152 (6)
H40.52500.44280.15600.018*
U11U22U33U12U13U23
Dy10.00587 (12)0.00587 (12)0.0051 (2)−0.00030 (6)0.0000.000
Cl10.0138 (5)0.0138 (5)0.0061 (11)0.0000.0000.000
Cl20.0263 (4)0.0263 (4)0.0316 (9)−0.0106 (5)0.0033 (3)−0.0033 (3)
O10.0097 (8)0.0235 (10)0.0132 (12)−0.0029 (7)0.0045 (7)−0.0042 (8)
O20.0247 (10)0.0113 (8)0.0100 (13)−0.0020 (7)−0.0023 (8)0.0048 (7)
O30.0179 (11)0.0433 (15)0.0142 (15)0.0047 (9)−0.0040 (10)−0.0023 (9)
O40.066 (3)0.114 (5)0.230 (7)−0.010 (3)0.097 (5)−0.016 (5)
O50.076 (4)0.099 (4)0.212 (9)0.003 (3)−0.058 (5)−0.076 (5)
N10.0113 (10)0.0182 (10)0.0134 (16)−0.0011 (8)0.0010 (9)0.0001 (10)
N20.0149 (10)0.0121 (10)0.0108 (15)−0.0003 (8)−0.0013 (9)0.0018 (9)
C10.0154 (12)0.0159 (12)0.0142 (17)−0.0005 (9)0.0008 (10)−0.0029 (10)
C20.0137 (12)0.0182 (13)0.0130 (17)−0.0004 (9)0.0006 (10)−0.0040 (11)
C30.0193 (13)0.0110 (11)0.0169 (18)−0.0022 (10)−0.0026 (12)0.0005 (10)
C40.0205 (13)0.0116 (11)0.0135 (17)−0.0001 (10)0.0006 (11)0.0000 (10)
Dy1—O1i2.333 (2)Cl2—O5vi1.380 (6)
Dy1—O1ii2.333 (2)O1—N11.306 (3)
Dy1—O12.333 (2)O2—N21.298 (3)
Dy1—O1iii2.333 (2)N1—C11.358 (4)
Dy1—O2i2.3665 (19)N1—C2vii1.358 (4)
Dy1—O2ii2.3665 (19)N2—C31.351 (4)
Dy1—O22.3665 (19)N2—C4viii1.359 (3)
Dy1—O2iii2.3665 (19)C1—C21.366 (4)
Cl1—O31.440 (2)C1—H10.9500
Cl1—O3iv1.440 (2)C2—N1vii1.358 (4)
Cl1—O3iii1.440 (2)C2—H20.9500
Cl1—O3v1.440 (2)C3—C41.370 (4)
Cl2—O4vi1.355 (4)C3—H30.9500
Cl2—O41.355 (4)C4—N2viii1.359 (3)
Cl2—O51.380 (6)C4—H40.9500
O1i—Dy1—O1ii78.16 (11)O3iv—Cl1—O3iii109.92 (11)
O1i—Dy1—O1147.81 (10)O3—Cl1—O3v109.92 (11)
O1ii—Dy1—O1111.03 (11)O3iv—Cl1—O3v108.6 (2)
O1i—Dy1—O1iii111.03 (11)O3iii—Cl1—O3v109.91 (11)
O1ii—Dy1—O1iii147.81 (10)O4vi—Cl2—O4109.3 (6)
O1—Dy1—O1iii78.16 (11)O4vi—Cl2—O5114.0 (4)
O1i—Dy1—O2i80.49 (7)O4—Cl2—O5109.9 (5)
O1ii—Dy1—O2i72.64 (7)O4vi—Cl2—O5vi109.9 (5)
O1—Dy1—O2i73.66 (7)O4—Cl2—O5vi114.0 (4)
O1iii—Dy1—O2i138.16 (7)O5—Cl2—O5vi99.7 (8)
O1i—Dy1—O2ii72.64 (7)N1—O1—Dy1142.21 (18)
O1ii—Dy1—O2ii80.49 (7)N2—O2—Dy1141.19 (17)
O1—Dy1—O2ii138.16 (7)O1—N1—C1119.1 (2)
O1iii—Dy1—O2ii73.66 (7)O1—N1—C2vii121.3 (2)
O2i—Dy1—O2ii145.25 (11)C1—N1—C2vii119.5 (2)
O1i—Dy1—O273.66 (7)O2—N2—C3121.7 (2)
O1ii—Dy1—O2138.16 (7)O2—N2—C4viii119.2 (3)
O1—Dy1—O280.49 (7)C3—N2—C4viii119.1 (3)
O1iii—Dy1—O272.64 (7)N1—C1—C2120.4 (3)
O2i—Dy1—O272.71 (10)N1—C1—H1119.8
O2ii—Dy1—O2118.40 (10)C2—C1—H1119.8
O1i—Dy1—O2iii138.16 (7)N1vii—C2—C1120.1 (3)
O1ii—Dy1—O2iii73.66 (7)N1vii—C2—H2120.0
O1—Dy1—O2iii72.64 (7)C1—C2—H2120.0
O1iii—Dy1—O2iii80.49 (7)N2—C3—C4120.4 (2)
O2i—Dy1—O2iii118.40 (10)N2—C3—H3119.8
O2ii—Dy1—O2iii72.71 (10)C4—C3—H3119.8
O2—Dy1—O2iii145.25 (11)N2viii—C4—C3120.5 (3)
O3—Cl1—O3iv109.91 (11)N2viii—C4—H4119.8
O3—Cl1—O3iii108.6 (2)C3—C4—H4119.8
D—H···AD—HH···AD···AD—H···A
C2—H2···O2vii0.952.523.293 (4)138.
C2—H2···O50.952.403.168 (6)137.
C3—H3···O10.952.603.329 (4)134.
C3—H3···O30.952.473.234 (4)138.
C4—H4···O3iv0.952.373.245 (4)153.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O2i0.952.523.293 (4)138
C2—H2⋯O50.952.403.168 (6)137
C3—H3⋯O10.952.603.329 (4)134
C3—H3⋯O30.952.473.234 (4)138
C4—H4⋯O3ii0.952.373.245 (4)153

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Poly[[tetra-kis-(μ(2)-pyrazine N,N'-dioxide-κO:O')erbium(III)] tris-(perchlorate)].

Authors:  James D Buchner; Benjamin G Quinn-Elmore; Keith B Beach; Jacqueline M Knaust
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

3.  Poly[[tetra-kis-(μ(2)-pyrazine N,N'-dioxide-κO:O')holmium(III)] tris-(perchlorate)].

Authors:  James D Buchner; Benjamin G Quinn-Elmore; Keith B Beach; Jacqueline M Knaust
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

4.  Poly[[tetra-kis-(μ(2)-pyrazine N,N'-dioxide-κO:O')neodymium(III)] tris-(perchlorate)].

Authors:  Benjamin G Quinn-Elmore; James D Buchner; Keith B Beach; Jacqueline M Knaust
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18
  4 in total
  3 in total

1.  Poly[[tetra-kis-(μ(2)-pyrazine N,N'-dioxide-κO:O')erbium(III)] tris-(perchlorate)].

Authors:  James D Buchner; Benjamin G Quinn-Elmore; Keith B Beach; Jacqueline M Knaust
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

2.  Poly[[tetra-kis-(μ(2)-pyrazine N,N'-dioxide-κO:O')holmium(III)] tris-(perchlorate)].

Authors:  James D Buchner; Benjamin G Quinn-Elmore; Keith B Beach; Jacqueline M Knaust
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

3.  Poly[[tetra-kis-(μ(2)-pyrazine N,N'-dioxide-κO:O')neodymium(III)] tris-(perchlorate)].

Authors:  Benjamin G Quinn-Elmore; James D Buchner; Keith B Beach; Jacqueline M Knaust
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18
  3 in total

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