Literature DB >> 21588512

Bis{2-[1-(benzyl-imino)-eth-yl]phenolato}palladium(II).

Amalina Mohd Tajuddin, Hadariah Bahron, Wan Nazihah Wan Ibrahim, Bohari M Yamin.   

Abstract

In the title compound, [Pd(C(15)H(14)NO)(2)], the Pd atom lies on an inversion center and is coordinated by two ligand mol-ecules through the O and N atoms in a bidentate manner, forming a slightly distorted square-planar geometry. The dihedral angle between the two benzene rings in the ligand is 76.53 (19)°. The mol-ecular packing is stablized by C-H⋯O and C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21588512      PMCID: PMC3007840          DOI: 10.1107/S1600536810031375

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the catalytic activity of palladium(II)–Schiff base complexes, see: Gupta & Sutar (2008 ▶); Lai et al. (2005 ▶) and for their anti­tumor activity, see: Garoufis et al. (2008 ▶). For related structures, see: Adrian et al. (2008 ▶); Wan Nazihah Wan Ibrahim et al. (2008 ▶); Chen & Xia (2009 ▶). For bond-length data, see: Allen et al. (2002 ▶).

Experimental

Crystal data

[Pd(C15H14NO)2] M = 554.94 Monoclinic, a = 11.188 (2) Å b = 9.4460 (17) Å c = 11.984 (2) Å β = 110.558 (4)° V = 1185.8 (4) Å3 Z = 2 Mo Kα radiation μ = 0.81 mm−1 T = 298 K 0.28 × 0.20 × 0.12 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.804, T max = 0.908 6420 measured reflections 2177 independent reflections 1939 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.109 S = 1.18 2177 reflections 161 parameters H-atom parameters constrained Δρmax = 0.88 e Å−3 Δρmin = −0.98 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT (Bruker, 2000 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶), PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810031375/pv2311sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810031375/pv2311Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Pd(C15H14NO)2]F(000) = 568
Mr = 554.94Dx = 1.554 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4170 reflections
a = 11.188 (2) Åθ = 2.1–25.5°
b = 9.4460 (17) ŵ = 0.81 mm1
c = 11.984 (2) ÅT = 298 K
β = 110.558 (4)°Block, yellow
V = 1185.8 (4) Å30.28 × 0.20 × 0.12 mm
Z = 2
Bruker SMART APEX CCD area-detector diffractometer2177 independent reflections
Radiation source: fine-focus sealed tube1939 reflections with I > 2/s(I)
graphiteRint = 0.038
Detector resolution: 83.66 pixels mm-1θmax = 25.5°, θmin = 2.1°
ω scanh = −13→13
Absorption correction: multi-scan (SADABS; Bruker, 2000)k = −11→11
Tmin = 0.804, Tmax = 0.908l = −14→11
6420 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 1.18w = 1/[σ2(Fo2) + (0.0502P)2 + 0.7043P] where P = (Fo2 + 2Fc2)/3
2177 reflections(Δ/σ)max < 0.001
161 parametersΔρmax = 0.88 e Å3
0 restraintsΔρmin = −0.98 e Å3
Experimental. Analytical calculation for C30H28N2O2Pd: C,64.93; H,5.09; N,5.05. Found: C,64.58; H,4.97; N,4.94. IR (cm-1): v(C=N) 1586, v(C—O) 1323, v(C—H) 2977, v(C—N) 1355, v(Pd—O) 695, v(Pd—N) 476.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.50000.50000.00000.02879 (16)
O10.4462 (2)0.5912 (3)0.1236 (2)0.0409 (6)
N10.6541 (2)0.6317 (3)0.0459 (2)0.0323 (6)
C10.5319 (3)0.6226 (3)0.2285 (3)0.0335 (7)
C20.4944 (3)0.6076 (4)0.3284 (3)0.0422 (8)
H2A0.41280.57480.31780.051*
C30.5765 (4)0.6406 (4)0.4419 (3)0.0468 (9)
H3A0.55030.62910.50690.056*
C40.6971 (4)0.6906 (4)0.4583 (4)0.0498 (10)
H4A0.75290.71160.53460.060*
C50.7346 (3)0.7095 (4)0.3632 (4)0.0428 (9)
H5A0.81560.74580.37600.051*
C60.6551 (3)0.6758 (3)0.2454 (3)0.0326 (7)
C70.7007 (3)0.6991 (3)0.1464 (3)0.0335 (7)
C80.8047 (4)0.8088 (4)0.1658 (4)0.0437 (9)
H8A0.79610.85290.09120.066*
H8B0.88670.76380.19770.066*
H8C0.79740.87930.22080.066*
C90.7070 (3)0.6577 (3)−0.0483 (3)0.0347 (7)
H9A0.69930.5717−0.09450.042*
H9B0.79720.6790−0.01140.042*
C100.6432 (3)0.7774 (3)−0.1320 (3)0.0321 (7)
C110.5685 (3)0.8786 (4)−0.1050 (3)0.0423 (8)
H11A0.55410.8737−0.03330.051*
C120.5149 (5)0.9877 (4)−0.1846 (5)0.0554 (12)
H12A0.46461.0553−0.16570.066*
C130.5354 (6)0.9965 (4)−0.2906 (5)0.0569 (13)
H13A0.49981.0701−0.34320.068*
C140.6090 (4)0.8957 (4)−0.3186 (4)0.0531 (10)
H14A0.62310.9007−0.39050.064*
C150.6619 (3)0.7873 (4)−0.2398 (3)0.0438 (9)
H15A0.71120.7193−0.25950.053*
U11U22U33U12U13U23
Pd10.0270 (2)0.0261 (2)0.0302 (3)−0.00145 (11)0.00621 (17)0.00023 (12)
O10.0325 (12)0.0481 (14)0.0402 (14)−0.0030 (10)0.0104 (11)−0.0108 (11)
N10.0297 (13)0.0273 (13)0.0396 (16)0.0003 (11)0.0116 (12)0.0024 (12)
C10.0351 (16)0.0236 (15)0.039 (2)0.0035 (13)0.0098 (15)−0.0020 (14)
C20.0437 (19)0.0346 (18)0.053 (2)−0.0016 (15)0.0227 (18)−0.0025 (16)
C30.057 (2)0.049 (2)0.036 (2)0.0019 (18)0.0177 (18)−0.0037 (17)
C40.053 (2)0.054 (2)0.034 (2)0.0033 (18)0.0051 (18)−0.0084 (18)
C50.0366 (18)0.041 (2)0.046 (2)0.0004 (15)0.0083 (17)−0.0055 (17)
C60.0357 (16)0.0268 (16)0.0317 (18)0.0023 (13)0.0074 (14)−0.0005 (13)
C70.0301 (16)0.0257 (15)0.038 (2)0.0009 (13)0.0041 (14)0.0009 (14)
C80.0424 (19)0.0353 (19)0.050 (2)−0.0090 (15)0.0115 (18)−0.0001 (17)
C90.0300 (16)0.0345 (17)0.040 (2)−0.0021 (13)0.0133 (15)−0.0002 (14)
C100.0320 (16)0.0330 (16)0.0305 (18)−0.0065 (13)0.0099 (14)−0.0012 (14)
C110.053 (2)0.043 (2)0.0287 (19)0.0076 (16)0.0111 (16)0.0007 (16)
C120.074 (3)0.040 (2)0.052 (3)0.0167 (18)0.021 (3)0.0026 (17)
C130.076 (4)0.038 (2)0.051 (3)0.0001 (17)0.016 (3)0.0121 (16)
C140.072 (3)0.051 (2)0.043 (2)−0.010 (2)0.029 (2)0.0042 (18)
C150.050 (2)0.043 (2)0.046 (2)−0.0010 (16)0.0268 (18)−0.0005 (17)
Pd1—O11.981 (2)C7—C81.514 (4)
Pd1—O1i1.981 (2)C8—H8A0.9600
Pd1—N1i2.039 (3)C8—H8B0.9600
Pd1—N12.039 (3)C8—H8C0.9600
O1—C11.319 (4)C9—C101.514 (5)
N1—C71.299 (4)C9—H9A0.9700
N1—C91.468 (4)C9—H9B0.9700
C1—C21.407 (5)C10—C111.380 (5)
C1—C61.414 (4)C10—C151.382 (5)
C2—C31.384 (5)C11—C121.389 (6)
C2—H2A0.9300C11—H11A0.9300
C3—C41.377 (5)C12—C131.371 (8)
C3—H3A0.9300C12—H12A0.9300
C4—C51.357 (6)C13—C141.375 (6)
C4—H4A0.9300C13—H13A0.9300
C5—C61.415 (5)C14—C151.377 (6)
C5—H5A0.9300C14—H14A0.9300
C6—C71.463 (5)C15—H15A0.9300
O1—Pd1—O1i180.00 (8)C7—C8—H8A109.5
O1—Pd1—N1i90.97 (10)C7—C8—H8B109.5
O1i—Pd1—N1i89.03 (10)H8A—C8—H8B109.5
O1—Pd1—N189.03 (10)C7—C8—H8C109.5
O1i—Pd1—N190.97 (10)H8A—C8—H8C109.5
N1i—Pd1—N1180.00 (11)H8B—C8—H8C109.5
C1—O1—Pd1120.0 (2)N1—C9—C10114.3 (3)
C7—N1—C9119.5 (3)N1—C9—H9A108.7
C7—N1—Pd1125.1 (2)C10—C9—H9A108.7
C9—N1—Pd1115.2 (2)N1—C9—H9B108.7
O1—C1—C2117.0 (3)C10—C9—H9B108.7
O1—C1—C6124.2 (3)H9A—C9—H9B107.6
C2—C1—C6118.7 (3)C11—C10—C15118.3 (3)
C3—C2—C1121.4 (3)C11—C10—C9123.0 (3)
C3—C2—H2A119.3C15—C10—C9118.6 (3)
C1—C2—H2A119.3C10—C11—C12120.3 (4)
C4—C3—C2119.7 (3)C10—C11—H11A119.9
C4—C3—H3A120.1C12—C11—H11A119.9
C2—C3—H3A120.1C13—C12—C11120.5 (4)
C5—C4—C3120.1 (4)C13—C12—H12A119.7
C5—C4—H4A119.9C11—C12—H12A119.7
C3—C4—H4A119.9C12—C13—C14119.6 (4)
C4—C5—C6122.4 (4)C12—C13—H13A120.2
C4—C5—H5A118.8C14—C13—H13A120.2
C6—C5—H5A118.8C13—C14—C15119.8 (4)
C1—C6—C5117.6 (3)C13—C14—H14A120.1
C1—C6—C7122.5 (3)C15—C14—H14A120.1
C5—C6—C7119.9 (3)C14—C15—C10121.4 (3)
N1—C7—C6122.5 (3)C14—C15—H15A119.3
N1—C7—C8120.9 (3)C10—C15—H15A119.3
C6—C7—C8116.5 (3)
O1i—Pd1—O1—C1−151 (100)C4—C5—C6—C7179.6 (3)
N1i—Pd1—O1—C1138.5 (2)C9—N1—C7—C6−178.3 (3)
N1—Pd1—O1—C1−41.5 (2)Pd1—N1—C7—C66.9 (4)
O1—Pd1—N1—C720.0 (3)C9—N1—C7—C82.7 (4)
O1i—Pd1—N1—C7−160.0 (3)Pd1—N1—C7—C8−172.1 (2)
N1i—Pd1—N1—C7156 (100)C1—C6—C7—N1−24.1 (5)
O1—Pd1—N1—C9−155.0 (2)C5—C6—C7—N1157.2 (3)
O1i—Pd1—N1—C925.0 (2)C1—C6—C7—C8155.0 (3)
N1i—Pd1—N1—C9−19 (100)C5—C6—C7—C8−23.7 (5)
Pd1—O1—C1—C2−144.1 (2)C7—N1—C9—C10−89.1 (3)
Pd1—O1—C1—C638.9 (4)Pd1—N1—C9—C1086.1 (3)
O1—C1—C2—C3−178.7 (3)N1—C9—C10—C1117.5 (4)
C6—C1—C2—C3−1.5 (5)N1—C9—C10—C15−163.5 (3)
C1—C2—C3—C40.7 (6)C15—C10—C11—C12−0.5 (6)
C2—C3—C4—C51.0 (6)C9—C10—C11—C12178.6 (4)
C3—C4—C5—C6−1.8 (6)C10—C11—C12—C13−0.1 (7)
O1—C1—C6—C5177.7 (3)C11—C12—C13—C140.5 (8)
C2—C1—C6—C50.7 (4)C12—C13—C14—C15−0.3 (7)
O1—C1—C6—C7−1.0 (5)C13—C14—C15—C10−0.3 (6)
C2—C1—C6—C7−178.0 (3)C11—C10—C15—C140.7 (5)
C4—C5—C6—C10.9 (5)C9—C10—C15—C14−178.4 (3)
Cg3 and Cg4 are the centroids of the ???? and ???? rings, respectively.
D—H···AD—HH···AD···AD—H···A
C9—H9A···O1i0.972.182.862 (4)127
C11—H11A···N10.932.582.900 (5)101
C8—H8B···Cg4ii0.962.573.523 (5)172
C13—H13A···Cg3iii0.932.873.626 (5)139
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 and Cg4 are the centroids of the C1–C6 and C10–C16 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9A⋯O1i0.972.182.862 (4)127
C8—H8BCg4ii0.962.573.523 (5)172
C13—H13ACg3iii0.932.873.626 (5)139

Symmetry codes: (i) ; (ii) ; (iii) .

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3.  Bis{2-[(E)-benzyl-imino-meth-yl]-4-methyl-phenolato-κN,O}nickel(II).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-15

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5.  {2,2'-[(2,2-Dimethyl-propane-1,3-di-yl)bis-(nitrilo-methyl-idyne)]diphenolato}palladium(II) ethanol hemisolvate.

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1.  Bis{2-[(E)-(4-fluoro-benz-yl)imino-meth-yl]-6-meth-oxy-phenolato}palladium(II).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-20

2.  Bis{2-[(E)-(4-fluoro-benz-yl)imino-meth-yl]-6-meth-oxy-phenolato-κN,O}nickel(II).

Authors:  Hadariah Bahron; Amalina Mohd Tajuddin; Wan Nazihah Wan Ibrahim; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-02

3.  Crystal structure of bis-{2-[(E)-(4-meth-oxy-lbenz-yl)imino-meth-yl]phenolato-κ(2) N,O (1)}nickel(II).

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