Literature DB >> 21588467

6-Benzyl-oxycoumarin.

Morina Adfa, Mamoru Koketsu, Masahiro Ebihara.   

Abstract

In the title compound, 6-benz-yloxy-2H-1-benzopyran-2-one, C(16)H(12)O(3), the coumarin unit and benzyl plane in the mol-ecule are perpendicular to each other [86.92 (7)°]. The crystal packing is stabilized by π-π stacking inter-actions, with an inter-planar separation between inversion-related coumarin units of 3.618 (3) Å. The crystal structure shows inter-molecular C-H⋯O hydrogen bonding between neighboring mol-ecules.

Entities:  

Year:  2010        PMID: 21588467      PMCID: PMC3007414          DOI: 10.1107/S1600536810029430

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to coumarin, see: Adfa et al. (2010 ▶); Gunnewegh et al. (1995 ▶); Li et al. (1998 ▶); Murray et al. (1982 ▶); Schönberg & Latif (1954 ▶). For related compounds, see: Chinnakali et al. (1998 ▶); Jasinski et al. (2003 ▶).

Experimental

Crystal data

C16H12O3 M = 252.26 Monoclinic, a = 20.391 (12) Å b = 6.732 (4) Å c = 18.844 (11) Å β = 94.833 (8)° V = 2578 (3) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.30 × 0.10 × 0.10 mm

Data collection

Rigaku AFC7R Mercury CCD diffractometer 10197 measured reflections 2912 independent reflections 2070 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.075 wR(F 2) = 0.190 S = 1.20 2912 reflections 172 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2001 ▶); cell refinement: CrystalClear; data reduction: Yadokari-XG 2009 (Wakita, 2001 ▶; Kabuto et al., 2009 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Yadokari-XG 2009 and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, General. DOI: 10.1107/S1600536810029430/zl2289sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810029430/zl2289Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12O3F(000) = 1056
Mr = 252.26Dx = 1.300 Mg m3
Monoclinic, C2/cMelting point: 385 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71070 Å
a = 20.391 (12) ÅCell parameters from 2417 reflections
b = 6.732 (4) Åθ = 3.1–27.5°
c = 18.844 (11) ŵ = 0.09 mm1
β = 94.833 (8)°T = 296 K
V = 2578 (3) Å3Prism, colourless
Z = 80.30 × 0.10 × 0.10 mm
Rigaku AFC7R Mercury CCD diffractometer2070 reflections with I > 2σ(I)
Radiation source: Rotating AnodeRint = 0.039
graphiteθmax = 27.5°, θmin = 3.1°
Detector resolution: 14.6199 pixels mm-1h = −23→26
dtintegrate.ref scansk = −7→8
10197 measured reflectionsl = −24→24
2912 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.075Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.190H-atom parameters constrained
S = 1.20w = 1/[σ2(Fo2) + (0.0813P)2 + 0.4589P] where P = (Fo2 + 2Fc2)/3
2912 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.08714 (7)−0.28238 (19)0.06726 (8)0.0517 (4)
C10.14413 (11)−0.2635 (3)0.03418 (12)0.0499 (5)
O20.17437 (9)−0.4146 (2)0.02481 (10)0.0698 (5)
C20.16227 (12)−0.0660 (3)0.01380 (13)0.0565 (6)
H20.1997−0.0486−0.01050.068*
C30.12678 (11)0.0923 (3)0.02892 (13)0.0545 (6)
H30.13950.21760.01450.065*
C40.06915 (10)0.0725 (3)0.06722 (11)0.0441 (5)
C50.03075 (11)0.2315 (3)0.08766 (12)0.0499 (6)
H50.04180.36050.07570.060*
C6−0.02290 (11)0.1989 (3)0.12518 (13)0.0505 (5)
C7−0.04011 (11)0.0050 (3)0.14279 (13)0.0586 (6)
H7−0.0765−0.01730.16830.070*
C8−0.00300 (11)−0.1532 (3)0.12231 (13)0.0552 (6)
H8−0.0144−0.28230.13380.066*
C90.05060 (10)−0.1191 (3)0.08502 (11)0.0438 (5)
O3−0.05721 (8)0.3649 (2)0.14299 (11)0.0687 (5)
C10−0.11309 (13)0.3365 (3)0.18242 (16)0.0676 (7)
H10A−0.09950.27850.22840.081*
H10B−0.14380.24610.15700.081*
C11−0.14576 (11)0.5327 (3)0.19239 (12)0.0512 (6)
C12−0.13279 (13)0.6408 (3)0.25384 (13)0.0612 (6)
H12−0.10170.59470.28890.073*
C13−0.16522 (14)0.8164 (3)0.26425 (14)0.0652 (7)
H13−0.15610.88720.30630.078*
C14−0.21066 (13)0.8871 (3)0.21321 (14)0.0609 (7)
H14−0.23261.00560.22040.073*
C15−0.22378 (13)0.7825 (4)0.15136 (14)0.0676 (7)
H15−0.25460.83030.11630.081*
C16−0.19132 (14)0.6060 (3)0.14083 (13)0.0633 (7)
H16−0.20030.53610.09860.076*
U11U22U33U12U13U23
O10.0507 (9)0.0364 (7)0.0700 (10)0.0055 (6)0.0165 (7)0.0010 (6)
C10.0495 (13)0.0468 (11)0.0544 (13)0.0074 (9)0.0111 (10)−0.0030 (9)
O20.0723 (12)0.0497 (9)0.0911 (13)0.0141 (8)0.0283 (10)−0.0049 (8)
C20.0532 (14)0.0518 (12)0.0673 (15)0.0009 (10)0.0221 (11)0.0011 (10)
C30.0528 (14)0.0423 (11)0.0710 (15)−0.0025 (9)0.0213 (11)0.0034 (10)
C40.0417 (12)0.0379 (10)0.0530 (12)−0.0008 (8)0.0064 (9)0.0019 (8)
C50.0471 (13)0.0324 (9)0.0716 (15)−0.0010 (8)0.0139 (11)0.0032 (9)
C60.0444 (12)0.0366 (10)0.0719 (15)0.0018 (8)0.0132 (10)−0.0017 (9)
C70.0472 (13)0.0428 (11)0.0891 (17)0.0001 (9)0.0253 (12)0.0079 (11)
C80.0497 (13)0.0350 (10)0.0832 (16)−0.0009 (8)0.0201 (11)0.0081 (10)
C90.0428 (12)0.0329 (9)0.0559 (12)0.0027 (8)0.0062 (9)0.0009 (8)
O30.0594 (11)0.0386 (8)0.1138 (14)0.0039 (7)0.0417 (10)0.0007 (8)
C100.0616 (16)0.0473 (12)0.099 (2)0.0020 (11)0.0363 (14)0.0014 (12)
C110.0481 (13)0.0437 (11)0.0648 (14)0.0003 (9)0.0223 (11)−0.0001 (10)
C120.0580 (15)0.0583 (13)0.0663 (16)0.0040 (11)−0.0015 (12)−0.0023 (11)
C130.0728 (18)0.0573 (13)0.0664 (15)0.0008 (12)0.0112 (13)−0.0144 (12)
C140.0550 (15)0.0485 (12)0.0829 (18)0.0063 (10)0.0280 (13)0.0006 (11)
C150.0596 (16)0.0721 (16)0.0709 (17)0.0104 (12)0.0045 (13)0.0135 (13)
C160.0697 (17)0.0645 (14)0.0568 (14)0.0001 (12)0.0115 (12)−0.0070 (11)
O1—C11.370 (3)C8—H80.9300
O1—C91.385 (2)O3—C101.425 (3)
C1—O21.210 (2)C10—C111.499 (3)
C1—C21.440 (3)C10—H10A0.9700
C2—C31.333 (3)C10—H10B0.9700
C2—H20.9300C11—C121.374 (3)
C3—C41.436 (3)C11—C161.378 (3)
C3—H30.9300C12—C131.377 (3)
C4—C91.393 (3)C12—H120.9300
C4—C51.399 (3)C13—C141.364 (4)
C5—C61.369 (3)C13—H130.9300
C5—H50.9300C14—C151.369 (4)
C6—O31.375 (2)C14—H140.9300
C6—C71.399 (3)C15—C161.382 (3)
C7—C81.380 (3)C15—H150.9300
C7—H70.9300C16—H160.9300
C8—C91.368 (3)
C1—O1—C9122.04 (15)O1—C9—C4120.94 (18)
O2—C1—O1116.78 (18)C6—O3—C10117.63 (16)
O2—C1—C2126.2 (2)O3—C10—C11109.29 (17)
O1—C1—C2116.97 (17)O3—C10—H10A109.8
C3—C2—C1121.7 (2)C11—C10—H10A109.8
C3—C2—H2119.2O3—C10—H10B109.8
C1—C2—H2119.2C11—C10—H10B109.8
C2—C3—C4121.00 (18)H10A—C10—H10B108.3
C2—C3—H3119.5C12—C11—C16118.4 (2)
C4—C3—H3119.5C12—C11—C10121.1 (2)
C9—C4—C5118.17 (19)C16—C11—C10120.5 (2)
C9—C4—C3117.23 (17)C11—C12—C13120.9 (2)
C5—C4—C3124.61 (18)C11—C12—H12119.5
C6—C5—C4120.65 (18)C13—C12—H12119.5
C6—C5—H5119.7C14—C13—C12120.3 (2)
C4—C5—H5119.7C14—C13—H13119.8
C5—C6—O3116.17 (17)C12—C13—H13119.8
C5—C6—C7119.94 (19)C13—C14—C15119.6 (2)
O3—C6—C7123.9 (2)C13—C14—H14120.2
C8—C7—C6119.9 (2)C15—C14—H14120.2
C8—C7—H7120.0C14—C15—C16120.2 (2)
C6—C7—H7120.0C14—C15—H15119.9
C9—C8—C7119.67 (18)C16—C15—H15119.9
C9—C8—H8120.2C11—C16—C15120.6 (2)
C7—C8—H8120.2C11—C16—H16119.7
C8—C9—O1117.41 (16)C15—C16—H16119.7
C8—C9—C4121.62 (18)
C9—O1—C1—O2175.73 (19)C5—C4—C9—C8−0.9 (3)
C9—O1—C1—C2−4.4 (3)C3—C4—C9—C8179.1 (2)
O2—C1—C2—C3−177.5 (3)C5—C4—C9—O1−179.01 (18)
O1—C1—C2—C32.7 (3)C3—C4—C9—O11.0 (3)
C1—C2—C3—C40.8 (4)C5—C6—O3—C10−179.6 (2)
C2—C3—C4—C9−2.7 (3)C7—C6—O3—C100.7 (4)
C2—C3—C4—C5177.3 (2)C6—O3—C10—C11−176.5 (2)
C9—C4—C5—C61.1 (3)O3—C10—C11—C12−96.5 (3)
C3—C4—C5—C6−178.9 (2)O3—C10—C11—C1685.6 (3)
C4—C5—C6—O3179.72 (19)C16—C11—C12—C131.0 (4)
C4—C5—C6—C7−0.6 (4)C10—C11—C12—C13−176.9 (2)
C5—C6—C7—C80.0 (4)C11—C12—C13—C14−0.5 (4)
O3—C6—C7—C8179.6 (2)C12—C13—C14—C15−0.2 (4)
C6—C7—C8—C90.2 (4)C13—C14—C15—C160.2 (4)
C7—C8—C9—O1178.4 (2)C12—C11—C16—C15−1.0 (4)
C7—C8—C9—C40.3 (4)C10—C11—C16—C15177.0 (2)
C1—O1—C9—C8−175.6 (2)C14—C15—C16—C110.3 (4)
C1—O1—C9—C42.6 (3)
D—H···AD—HH···AD···AD—H···A
C2—H2···O2i0.932.623.472 (3)153
C3—H3···O2ii0.932.583.461 (3)159
C5—H5···O1ii0.932.593.501 (3)168
C8—H8···O3iii0.932.543.460 (3)170
C16—H16···O2iv0.932.563.421 (3)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O2i0.932.623.472 (3)153
C3—H3⋯O2ii0.932.583.461 (3)159
C5—H5⋯O1ii0.932.593.501 (3)168
C8—H8⋯O3iii0.932.543.460 (3)170
C16—H16⋯O2iv0.932.563.421 (3)154

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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