Literature DB >> 21588462

tert-Butyl 4-formyl-1H-imidazole-1-carboxyl-ate.

Jun-Tao Kang1, Zhi-Gang Li, Jing-Wei Xu, Yang Wei.   

Abstract

In the crystal structure of the title compound, C(9)H(12)N(2)O(3), weak inter-molecular C-H⋯O hydrogen bonds link the mol-ecules into chains. Further weak C-H⋯O hydrogen bonds together with π-π inter-actions [centroid-centroid distance = 3.672 (4) Å] between neighbouring chains lead to a double-chain structure propagating in [100].

Entities:  

Year:  2010        PMID: 21588462      PMCID: PMC3007559          DOI: 10.1107/S1600536810029247

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For uses of imidazole direvatives, see: Matuszak et al. (1976 ▶), Verras et al. (2004 ▶). For the synthesis of the title compound, see: Metobo et al. (2006 ▶).

Experimental

Crystal data

C9H12N2O3 M = 196.21 Triclinic, a = 5.972 (3) Å b = 7.173 (7) Å c = 12.164 (11) Å α = 79.630 (16)° β = 86.620 (15)° γ = 89.326 (15)° V = 511.7 (8) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.14 × 0.11 × 0.03 mm

Data collection

Bruker APEX CCD area detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.987, T max = 0.997 2633 measured reflections 1769 independent reflections 915 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.149 S = 0.99 1769 reflections 130 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT-Plus (Bruker, 2007 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810029247/su2164sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810029247/su2164Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H12N2O3V = 511.7 (8) Å3
Mr = 196.21Z = 2
Triclinic, P1F(000) = 208
Hall symbol: -P 1Dx = 1.274 Mg m3
a = 5.972 (3) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.173 (7) ÅCell parameters from 360 reflections
c = 12.164 (11) ŵ = 0.10 mm1
α = 79.630 (16)°T = 293 K
β = 86.620 (15)°Plate, colourless
γ = 89.326 (15)°0.14 × 0.11 × 0.03 mm
Bruker APEX CCD area detector diffractometer1769 independent reflections
Radiation source: fine-focus sealed tube915 reflections with I > 2σ(I)
graphiteRint = 0.022
φ and ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −7→7
Tmin = 0.987, Tmax = 0.997k = −8→8
2633 measured reflectionsl = −14→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.0655P)2] where P = (Fo2 + 2Fc2)/3
1769 reflections(Δ/σ)max < 0.001
130 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.3982 (5)0.3453 (4)0.8094 (2)0.0910 (9)
O20.3540 (3)0.2118 (3)0.27957 (17)0.0501 (6)
O3−0.0065 (4)0.2329 (4)0.34612 (19)0.0794 (9)
N10.5369 (4)0.2729 (4)0.5822 (2)0.0562 (8)
N20.2860 (4)0.2475 (4)0.4569 (2)0.0480 (7)
C10.3197 (5)0.2938 (4)0.6277 (3)0.0505 (9)
C20.5087 (5)0.2466 (4)0.4808 (3)0.0503 (9)
H20.62620.22890.43010.060*
C30.1660 (5)0.2779 (4)0.5522 (3)0.0529 (9)
H30.01100.28590.56270.063*
C40.2649 (7)0.3323 (5)0.7404 (3)0.0668 (11)
H40.11420.34800.76060.080*
C50.1920 (6)0.2290 (5)0.3551 (3)0.0519 (9)
C60.3044 (5)0.1971 (5)0.1619 (3)0.0470 (8)
C70.5376 (5)0.1878 (5)0.1061 (3)0.0634 (10)
H7A0.62020.29930.11190.095*
H7B0.52570.18060.02860.095*
H7C0.61440.07750.14260.095*
C80.1737 (5)0.0162 (5)0.1638 (3)0.0702 (11)
H8A0.2552−0.08990.20170.105*
H8B0.1532−0.00010.08840.105*
H8C0.02990.02430.20230.105*
C90.1821 (5)0.3734 (5)0.1092 (3)0.0662 (11)
H9A0.03590.37710.14600.099*
H9B0.16740.37140.03120.099*
H9C0.26540.48350.11680.099*
U11U22U33U12U13U23
O10.117 (2)0.095 (2)0.0680 (19)−0.0003 (17)−0.0229 (17)−0.0287 (16)
O20.0374 (12)0.0691 (16)0.0448 (14)−0.0015 (10)0.0004 (10)−0.0143 (12)
O30.0360 (14)0.139 (3)0.0686 (18)0.0020 (13)−0.0019 (12)−0.0330 (17)
N10.0523 (18)0.064 (2)0.0522 (19)−0.0018 (13)−0.0066 (14)−0.0074 (15)
N20.0376 (15)0.0592 (19)0.0468 (18)−0.0004 (12)−0.0004 (14)−0.0089 (14)
C10.057 (2)0.046 (2)0.049 (2)−0.0062 (16)0.0026 (18)−0.0079 (17)
C20.0387 (18)0.055 (2)0.055 (2)−0.0014 (15)−0.0029 (16)−0.0051 (19)
C30.0437 (19)0.060 (2)0.054 (2)−0.0038 (16)0.0089 (18)−0.0105 (19)
C40.085 (3)0.054 (3)0.062 (3)−0.007 (2)−0.005 (2)−0.013 (2)
C50.040 (2)0.064 (2)0.051 (2)−0.0007 (16)0.0038 (18)−0.0114 (18)
C60.0434 (18)0.058 (2)0.041 (2)0.0034 (16)−0.0065 (15)−0.0121 (17)
C70.047 (2)0.086 (3)0.057 (2)−0.0012 (18)0.0030 (17)−0.016 (2)
C80.055 (2)0.074 (3)0.086 (3)−0.0117 (19)−0.0017 (19)−0.026 (2)
C90.067 (2)0.068 (3)0.063 (3)0.0089 (19)−0.0101 (19)−0.007 (2)
O1—C41.206 (4)C4—H40.9300
O2—C51.315 (4)C6—C91.512 (4)
O2—C61.501 (4)C6—C81.518 (5)
O3—C51.196 (3)C6—C71.519 (4)
N1—C21.301 (4)C7—H7A0.9600
N1—C11.398 (4)C7—H7B0.9600
N2—C31.376 (4)C7—H7C0.9600
N2—C21.378 (4)C8—H8A0.9600
N2—C51.417 (4)C8—H8B0.9600
C1—C31.356 (4)C8—H8C0.9600
C1—C41.464 (5)C9—H9A0.9600
C2—H20.9300C9—H9B0.9600
C3—H30.9300C9—H9C0.9600
C5—O2—C6121.3 (2)C9—C6—C8113.1 (3)
C2—N1—C1104.5 (3)O2—C6—C7102.4 (2)
C3—N2—C2106.1 (3)C9—C6—C7110.8 (3)
C3—N2—C5125.2 (3)C8—C6—C7111.5 (3)
C2—N2—C5128.7 (3)C6—C7—H7A109.5
C3—C1—N1110.6 (3)C6—C7—H7B109.5
C3—C1—C4124.5 (3)H7A—C7—H7B109.5
N1—C1—C4124.9 (3)C6—C7—H7C109.5
N1—C2—N2112.7 (3)H7A—C7—H7C109.5
N1—C2—H2123.6H7B—C7—H7C109.5
N2—C2—H2123.6C6—C8—H8A109.5
C1—C3—N2106.1 (3)C6—C8—H8B109.5
C1—C3—H3126.9H8A—C8—H8B109.5
N2—C3—H3126.9C6—C8—H8C109.5
O1—C4—C1125.7 (4)H8A—C8—H8C109.5
O1—C4—H4117.2H8B—C8—H8C109.5
C1—C4—H4117.2C6—C9—H9A109.5
O3—C5—O2129.1 (3)C6—C9—H9B109.5
O3—C5—N2121.5 (3)H9A—C9—H9B109.5
O2—C5—N2109.4 (3)C6—C9—H9C109.5
O2—C6—C9109.5 (2)H9A—C9—H9C109.5
O2—C6—C8109.0 (3)H9B—C9—H9C109.5
D—H···AD—HH···AD···AD—H···A
C2—H2···O3i0.932.363.251 (5)160
C9—H9C···O1ii0.962.653.531 (5)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O3i0.932.363.251 (5)160
C9—H9C⋯O1ii0.962.653.531 (5)153

Symmetry codes: (i) ; (ii) .

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