Literature DB >> 21588459

1-[5-(Dimethyl-amino)-1-naphthylsulfon-yl]imidazolidine-2-thione.

Yong Zhang1, Lei Teng.   

Abstract

In the title mol-ecule, C(15)H(17)N(3)O(2)S(2), the dihedral angle between the naphthalene ring system and the imidazole ring is 89.63 (2)°. The crystal structure is stablized by weak inter-molecuar C-H⋯π and N-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21588459      PMCID: PMC3007268          DOI: 10.1107/S1600536810029788

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the applications of compounds containing a 5-(dimethyl­amino)­naphthalene-1-sulfonyl group, see: Corradini et al. (1996 ▶, 1997 ▶); Christoforou et al. (2006 ▶). For a related structure, see: Zhang et al. (2009 ▶). For the synthetic procedure, see: Corradini et al. (1996 ▶).

Experimental

Crystal data

C15H17N3O2S2 M = 335.44 Monoclinic, a = 15.364 (4) Å b = 6.9814 (18) Å c = 15.470 (4) Å β = 113.967 (4)° V = 1516.3 (7) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 298 K 0.33 × 0.32 × 0.28 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.955, T max = 0.965 8935 measured reflections 3302 independent reflections 2605 reflections with I > 2σ(I) R int = 0.104

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.145 S = 1.04 3302 reflections 204 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.50 e Å−3 Δρmin = −0.35 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810029788/lh5094sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810029788/lh5094Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H17N3O2S2F(000) = 700
Mr = 335.44Dx = 1.465 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2682 reflections
a = 15.364 (4) Åθ = 2.4–28.1°
b = 6.9814 (18) ŵ = 0.36 mm1
c = 15.470 (4) ÅT = 298 K
β = 113.967 (4)°Block, yellow
V = 1516.3 (7) Å30.33 × 0.32 × 0.28 mm
Z = 4
Bruker SMART CCD diffractometer3302 independent reflections
Radiation source: fine-focus sealed tube2605 reflections with I > 2σ(I)
graphiteRint = 0.104
φ and ω scansθmax = 27.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −17→19
Tmin = 0.955, Tmax = 0.965k = −8→8
8935 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.071P)2] where P = (Fo2 + 2Fc2)/3
3302 reflections(Δ/σ)max = 0.001
204 parametersΔρmax = 0.50 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.61885 (15)0.6070 (3)0.72722 (15)0.0306 (5)
C20.68621 (19)0.7474 (3)0.76019 (18)0.0379 (6)
H20.68680.84660.72030.045*
C30.75453 (19)0.7430 (3)0.85392 (19)0.0434 (6)
H30.80110.83750.87460.052*
C40.75429 (17)0.6051 (3)0.91479 (17)0.0384 (6)
H40.79830.60990.97740.046*
C50.68768 (15)0.4529 (3)0.88431 (15)0.0271 (5)
C60.68432 (16)0.2951 (3)0.94243 (16)0.0299 (5)
C70.62594 (17)0.1403 (3)0.90561 (16)0.0342 (5)
H70.62530.03980.94480.041*
C80.56701 (17)0.1343 (3)0.80839 (17)0.0370 (6)
H80.52980.02670.78280.044*
C90.56426 (17)0.2841 (3)0.75203 (17)0.0336 (5)
H90.52350.27920.68830.040*
C100.62191 (14)0.4484 (3)0.78765 (15)0.0271 (5)
C110.45077 (18)0.6337 (5)0.6290 (2)0.0536 (7)
H11A0.44250.55780.67690.080*
H11B0.40510.59530.56780.080*
H11C0.44160.76650.63910.080*
C120.5635 (2)0.7304 (4)0.5667 (2)0.0576 (8)
H12A0.56040.86160.58370.086*
H12B0.51570.70720.50430.086*
H12C0.62530.70460.56770.086*
C130.7299 (2)0.6395 (4)1.1372 (2)0.0589 (8)
H13A0.73910.70551.08630.071*
H13B0.78960.63941.19290.071*
C140.6522 (2)0.7308 (4)1.1575 (2)0.0515 (7)
H14A0.67640.78061.22160.062*
H14B0.62230.83411.11350.062*
C150.60716 (16)0.4138 (3)1.11357 (15)0.0336 (5)
N10.54715 (14)0.6055 (3)0.63401 (13)0.0381 (5)
N20.69536 (13)0.4434 (3)1.10932 (13)0.0328 (4)
N30.58699 (18)0.5772 (3)1.14554 (17)0.0496 (6)
H3A0.534 (2)0.590 (4)1.154 (2)0.059*
O10.74468 (12)0.1037 (2)1.09977 (12)0.0422 (4)
O20.84230 (11)0.3748 (3)1.09114 (11)0.0414 (4)
S10.75069 (4)0.29031 (8)1.06638 (4)0.03206 (19)
S20.53971 (5)0.22082 (10)1.08475 (6)0.0524 (2)
U11U22U33U12U13U23
C10.0297 (12)0.0365 (13)0.0286 (12)0.0012 (10)0.0150 (9)0.0006 (9)
C20.0425 (14)0.0352 (13)0.0384 (13)−0.0015 (10)0.0190 (11)0.0049 (10)
C30.0452 (16)0.0396 (14)0.0437 (15)−0.0167 (11)0.0165 (12)−0.0017 (11)
C40.0372 (14)0.0423 (14)0.0316 (12)−0.0092 (11)0.0097 (10)−0.0028 (10)
C50.0263 (11)0.0309 (11)0.0263 (11)0.0000 (9)0.0129 (8)−0.0013 (9)
C60.0266 (11)0.0343 (12)0.0291 (11)0.0026 (9)0.0118 (9)0.0001 (9)
C70.0402 (13)0.0308 (12)0.0339 (12)−0.0022 (10)0.0173 (10)−0.0006 (10)
C80.0413 (14)0.0339 (13)0.0393 (13)−0.0111 (11)0.0200 (11)−0.0103 (10)
C90.0303 (12)0.0416 (13)0.0295 (12)−0.0041 (10)0.0126 (9)−0.0060 (10)
C100.0232 (10)0.0328 (12)0.0280 (11)0.0021 (9)0.0130 (9)−0.0015 (9)
C110.0345 (15)0.072 (2)0.0477 (16)0.0080 (14)0.0092 (12)0.0107 (14)
C120.0583 (19)0.073 (2)0.0356 (15)−0.0115 (15)0.0130 (13)0.0146 (13)
C130.0640 (19)0.0383 (15)0.083 (2)−0.0096 (14)0.0386 (17)−0.0153 (15)
C140.070 (2)0.0387 (15)0.0469 (16)0.0002 (13)0.0246 (15)−0.0069 (12)
C150.0395 (13)0.0371 (13)0.0266 (11)0.0071 (10)0.0158 (10)0.0067 (10)
N10.0322 (11)0.0490 (12)0.0302 (10)0.0000 (9)0.0099 (8)0.0070 (9)
N20.0342 (11)0.0307 (10)0.0343 (11)−0.0012 (8)0.0145 (8)−0.0036 (8)
N30.0595 (15)0.0440 (13)0.0595 (15)0.0068 (11)0.0389 (13)−0.0025 (11)
O10.0509 (11)0.0343 (9)0.0399 (10)0.0105 (8)0.0169 (8)0.0090 (7)
O20.0284 (9)0.0521 (11)0.0391 (10)0.0026 (8)0.0092 (7)0.0035 (8)
S10.0314 (3)0.0339 (3)0.0303 (3)0.0052 (2)0.0119 (2)0.0030 (2)
S20.0465 (4)0.0484 (4)0.0687 (5)−0.0096 (3)0.0300 (4)0.0000 (3)
C1—C21.365 (3)C11—H11B0.9600
C1—N11.415 (3)C11—H11C0.9600
C1—C101.437 (3)C12—N11.456 (3)
C2—C31.403 (4)C12—H12A0.9600
C2—H20.9300C12—H12B0.9600
C3—C41.348 (3)C12—H12C0.9600
C3—H30.9300C13—N21.468 (3)
C4—C51.417 (3)C13—C141.496 (4)
C4—H40.9300C13—H13A0.9700
C5—C101.425 (3)C13—H13B0.9700
C5—C61.436 (3)C14—N31.428 (3)
C6—C71.372 (3)C14—H14A0.9700
C6—S11.769 (2)C14—H14B0.9700
C7—C81.406 (3)C15—N31.329 (3)
C7—H70.9300C15—N21.398 (3)
C8—C91.351 (3)C15—S21.647 (2)
C8—H80.9300N2—S11.6628 (19)
C9—C101.417 (3)N3—H3A0.88 (3)
C9—H90.9300O1—S11.4182 (17)
C11—N11.464 (3)O2—S11.4275 (17)
C11—H11A0.9600
C2—C1—N1123.0 (2)N1—C12—H12A109.5
C2—C1—C10119.4 (2)N1—C12—H12B109.5
N1—C1—C10117.6 (2)H12A—C12—H12B109.5
C1—C2—C3120.4 (2)N1—C12—H12C109.5
C1—C2—H2119.8H12A—C12—H12C109.5
C3—C2—H2119.8H12B—C12—H12C109.5
C4—C3—C2121.7 (2)N2—C13—C14103.6 (2)
C4—C3—H3119.2N2—C13—H13A111.0
C2—C3—H3119.2C14—C13—H13A111.0
C3—C4—C5120.7 (2)N2—C13—H13B111.0
C3—C4—H4119.7C14—C13—H13B111.0
C5—C4—H4119.7H13A—C13—H13B109.0
C4—C5—C10118.31 (19)N3—C14—C13103.3 (2)
C4—C5—C6124.9 (2)N3—C14—H14A111.1
C10—C5—C6116.72 (19)C13—C14—H14A111.1
C7—C6—C5121.9 (2)N3—C14—H14B111.1
C7—C6—S1115.27 (17)C13—C14—H14B111.1
C5—C6—S1122.80 (17)H14A—C14—H14B109.1
C6—C7—C8119.7 (2)N3—C15—N2105.5 (2)
C6—C7—H7120.1N3—C15—S2125.9 (2)
C8—C7—H7120.1N2—C15—S2128.54 (17)
C9—C8—C7120.3 (2)C1—N1—C12115.8 (2)
C9—C8—H8119.8C1—N1—C11113.87 (19)
C7—C8—H8119.8C12—N1—C11110.3 (2)
C8—C9—C10121.7 (2)C15—N2—C13111.46 (19)
C8—C9—H9119.2C15—N2—S1125.90 (16)
C10—C9—H9119.2C13—N2—S1122.26 (17)
C9—C10—C5119.38 (19)C15—N3—C14115.8 (2)
C9—C10—C1121.37 (19)C15—N3—H3A121 (2)
C5—C10—C1119.17 (19)C14—N3—H3A123.1 (19)
N1—C11—H11A109.5O1—S1—O2119.00 (10)
N1—C11—H11B109.5O1—S1—N2108.99 (10)
H11A—C11—H11B109.5O2—S1—N2103.62 (10)
N1—C11—H11C109.5O1—S1—C6108.55 (11)
H11A—C11—H11C109.5O2—S1—C6110.75 (10)
H11B—C11—H11C109.5N2—S1—C6104.94 (10)
N1—C1—C2—C3178.9 (2)C2—C1—N1—C1216.4 (3)
C10—C1—C2—C3−3.7 (4)C10—C1—N1—C12−161.2 (2)
C1—C2—C3—C4−2.1 (4)C2—C1—N1—C11−113.0 (3)
C2—C3—C4—C53.6 (4)C10—C1—N1—C1169.5 (3)
C3—C4—C5—C100.7 (3)N3—C15—N2—C13−2.2 (3)
C3—C4—C5—C6177.1 (2)S2—C15—N2—C13177.2 (2)
C4—C5—C6—C7−171.7 (2)N3—C15—N2—S1−175.13 (17)
C10—C5—C6—C74.8 (3)S2—C15—N2—S14.3 (3)
C4—C5—C6—S111.1 (3)C14—C13—N2—C15−1.1 (3)
C10—C5—C6—S1−172.47 (15)C14—C13—N2—S1172.14 (18)
C5—C6—C7—C8−0.3 (3)N2—C15—N3—C145.0 (3)
S1—C6—C7—C8177.21 (17)S2—C15—N3—C14−174.4 (2)
C6—C7—C8—C9−3.2 (3)C13—C14—N3—C15−5.7 (3)
C7—C8—C9—C101.9 (4)C15—N2—S1—O1−44.0 (2)
C8—C9—C10—C52.9 (3)C13—N2—S1—O1143.8 (2)
C8—C9—C10—C1179.8 (2)C15—N2—S1—O2−171.64 (17)
C4—C5—C10—C9170.7 (2)C13—N2—S1—O216.1 (2)
C6—C5—C10—C9−6.0 (3)C15—N2—S1—C672.1 (2)
C4—C5—C10—C1−6.3 (3)C13—N2—S1—C6−100.1 (2)
C6—C5—C10—C1177.01 (18)C7—C6—S1—O112.6 (2)
C2—C1—C10—C9−169.1 (2)C5—C6—S1—O1−169.92 (17)
N1—C1—C10—C98.5 (3)C7—C6—S1—O2145.02 (18)
C2—C1—C10—C57.8 (3)C5—C6—S1—O2−37.5 (2)
N1—C1—C10—C5−174.59 (19)C7—C6—S1—N2−103.77 (18)
N2—C13—C14—N33.7 (3)C5—C6—S1—N273.67 (19)
Cg1 and Cg2 are the centroids of the C1–C5/C10 and C5–C10 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C2—H2···Cg1i0.932.883.667 (3)143
N3—H3A···Cg2ii0.88 (3)2.58 (3)3.433 (3)165 (2)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C1–C5/C10 and C5–C10 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯Cg1i0.932.883.667 (3)143
N3—H3ACg2ii0.88 (3)2.58 (3)3.433 (3)165 (2)

Symmetry codes: (i) ; (ii) .

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