Literature DB >> 21588440

N-[3,5-Dichloro-4-(1,1,2,2-tetra-fluoro-eth-oxy)phen-yl]-2,6-difluoro-benzamide.

Ying Liang1, San Wei, Zi-Wen Yang.   

Abstract

In the title compound, C(15)H(7)Cl(2)F(6)NO(2), the conformation of the N-H bond in the amide segment is anti to the C=O bond and the dihedral angle between the two benzene rings is 78.6 (3)°. The terminal -CHF(2) group is disordered over two orientations in a 0.67:0.33 ratio. In the crystal, the mol-ecules are linked by N-H⋯O hydrogen bonds, generating C(4) chains propagating in [100].

Entities:  

Year:  2010        PMID: 21588440      PMCID: PMC3007377          DOI: 10.1107/S1600536810029612

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological properties of related compounds, see: Liu, Li & Li (2004 ▶); Liu, Li & Zhong (2004 ▶); Shiga et al. (2003 ▶). For a related structure, see: Gowda et al. (2010 ▶). For reference structural data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C15H7Cl2F6NO2 M = 418.12 Orthorhombic, a = 9.426 (2) Å b = 15.568 (4) Å c = 22.601 (6) Å V = 3316.7 (15) Å3 Z = 8 Mo Kα radiation μ = 0.47 mm−1 T = 298 K 0.16 × 0.12 × 0.10 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.929, T max = 0.955 16415 measured reflections 2916 independent reflections 2111 reflections with I > 2σ(I) R int = 0.075

Refinement

R[F 2 > 2σ(F 2)] = 0.084 wR(F 2) = 0.253 S = 1.06 2916 reflections 254 parameters 35 restraints H-atom parameters constrained Δρmax = 0.54 e Å−3 Δρmin = −0.41 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810029612/hb5568sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810029612/hb5568Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H7Cl2F6NO2Dx = 1.675 Mg m3
Mr = 418.12Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PbcaCell parameters from 3100 reflections
a = 9.426 (2) Åθ = 2.7–20.5°
b = 15.568 (4) ŵ = 0.47 mm1
c = 22.601 (6) ÅT = 298 K
V = 3316.7 (15) Å3Block, colorless
Z = 80.16 × 0.12 × 0.10 mm
F(000) = 1664
Bruker SMART APEX CCD diffractometer2916 independent reflections
Radiation source: fine-focus sealed tube2111 reflections with I > 2σ(I)
graphiteRint = 0.075
φ and ω scansθmax = 25.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −11→11
Tmin = 0.929, Tmax = 0.955k = −16→18
16415 measured reflectionsl = −26→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.084Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.253H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.1378P)2 + 2.4511P] where P = (Fo2 + 2Fc2)/3
2916 reflections(Δ/σ)max = 0.001
254 parametersΔρmax = 0.54 e Å3
35 restraintsΔρmin = −0.40 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.2885 (5)0.6858 (3)0.5451 (2)0.0619 (12)
C20.2068 (8)0.6985 (5)0.5949 (3)0.096 (2)
C30.1779 (10)0.6367 (8)0.6345 (4)0.143 (4)
H30.12500.64810.66840.172*
C40.2302 (11)0.5553 (7)0.6230 (4)0.132 (4)
H40.21020.51100.64930.158*
C50.3106 (8)0.5382 (4)0.5739 (4)0.103 (2)
H50.34450.48310.56650.124*
C60.3391 (6)0.6032 (4)0.5365 (3)0.0741 (15)
C70.3282 (4)0.7581 (3)0.5045 (2)0.0564 (11)
C80.2294 (4)0.8573 (3)0.4316 (2)0.0559 (11)
C90.1389 (5)0.8554 (3)0.3827 (2)0.0613 (12)
H90.07750.80930.37730.074*
C100.1405 (5)0.9217 (3)0.3424 (2)0.0636 (12)
C110.2300 (6)0.9916 (3)0.3497 (2)0.0672 (13)
C120.3205 (5)0.9913 (3)0.3980 (3)0.0701 (14)
C130.3201 (5)0.9259 (3)0.4389 (3)0.0683 (14)
H130.38070.92800.47140.082*
C140.1507 (7)1.1246 (4)0.3126 (3)0.0855 (17)
C150.1869 (11)1.1839 (5)0.2601 (4)0.146 (3)
H150.28931.19450.25850.175*0.67
H15'0.21111.14130.22980.175*0.33
Cl10.43376 (19)1.07768 (10)0.40998 (10)0.1141 (8)
Cl20.0311 (2)0.91643 (11)0.28089 (7)0.1026 (7)
F10.1596 (6)0.7801 (4)0.6046 (2)0.1471 (19)
F20.4199 (4)0.5898 (2)0.48811 (18)0.1020 (12)
F30.0163 (5)1.1038 (3)0.3168 (3)0.1456 (19)
F40.1720 (6)1.1679 (3)0.3624 (2)0.1382 (18)
N10.2209 (4)0.7900 (2)0.47228 (18)0.0605 (10)
H10.13900.76670.47710.073*
O10.4498 (3)0.7837 (2)0.5020 (2)0.0816 (11)
O20.2375 (4)1.0559 (2)0.30668 (17)0.0788 (11)
F60.1153 (11)1.2577 (5)0.2708 (4)0.163 (3)0.67
F50.1452 (10)1.1438 (6)0.2108 (4)0.161 (3)0.67
F5'0.3088 (15)1.2237 (11)0.2688 (8)0.157 (6)0.33
F6'0.0536 (18)1.2059 (19)0.2406 (12)0.219 (10)0.33
U11U22U33U12U13U23
C10.051 (3)0.069 (3)0.066 (3)−0.002 (2)−0.004 (2)0.006 (2)
C20.095 (4)0.118 (6)0.073 (4)0.010 (4)0.008 (3)0.010 (4)
C30.139 (7)0.207 (11)0.084 (5)−0.018 (8)0.013 (5)0.049 (7)
C40.142 (8)0.139 (7)0.115 (7)−0.049 (6)−0.032 (6)0.069 (6)
C50.122 (6)0.076 (4)0.112 (6)−0.022 (4)−0.030 (5)0.038 (4)
C60.075 (3)0.065 (3)0.082 (4)−0.007 (3)−0.013 (3)0.011 (3)
C70.048 (2)0.048 (2)0.074 (3)0.006 (2)0.002 (2)−0.003 (2)
C80.043 (2)0.048 (2)0.076 (3)0.0048 (18)0.007 (2)0.000 (2)
C90.063 (3)0.051 (3)0.069 (3)−0.005 (2)0.010 (2)−0.008 (2)
C100.072 (3)0.061 (3)0.058 (3)0.003 (2)0.009 (2)−0.012 (2)
C110.071 (3)0.053 (3)0.077 (3)0.007 (2)0.015 (3)−0.001 (2)
C120.058 (3)0.046 (3)0.105 (4)0.002 (2)0.001 (3)0.008 (2)
C130.059 (3)0.046 (3)0.100 (4)0.006 (2)−0.015 (3)0.000 (2)
C140.105 (5)0.058 (3)0.093 (4)0.006 (3)−0.008 (3)0.002 (3)
C150.155 (5)0.127 (5)0.154 (5)0.027 (4)−0.017 (4)0.016 (4)
Cl10.0934 (12)0.0600 (9)0.189 (2)−0.0223 (7)−0.0398 (12)0.0268 (10)
Cl20.1460 (16)0.0985 (12)0.0632 (9)−0.0185 (10)−0.0191 (9)−0.0054 (7)
F10.174 (5)0.159 (4)0.109 (3)0.050 (4)0.041 (3)−0.021 (3)
F20.123 (3)0.067 (2)0.116 (3)0.0233 (19)0.022 (2)0.0026 (18)
F30.097 (3)0.097 (3)0.243 (6)0.021 (2)0.027 (3)0.002 (3)
F40.186 (5)0.104 (3)0.125 (3)0.062 (3)−0.023 (3)−0.016 (3)
N10.042 (2)0.055 (2)0.084 (3)−0.0037 (16)0.0022 (18)0.0098 (19)
O10.0474 (19)0.064 (2)0.134 (3)−0.0028 (16)−0.014 (2)0.020 (2)
O20.091 (3)0.059 (2)0.086 (3)0.0114 (18)0.022 (2)0.0166 (18)
F60.179 (5)0.136 (4)0.174 (5)0.032 (4)−0.008 (4)0.038 (4)
F50.189 (5)0.165 (5)0.129 (4)0.017 (4)−0.020 (4)0.012 (4)
F5'0.157 (7)0.154 (7)0.160 (7)−0.004 (5)0.007 (5)0.006 (5)
F6'0.217 (11)0.221 (11)0.218 (11)0.004 (5)−0.006 (5)0.005 (5)
C1—C21.377 (8)C10—Cl21.733 (5)
C1—C61.385 (7)C11—C121.385 (7)
C1—C71.500 (7)C11—O21.398 (6)
C2—C31.344 (11)C12—C131.375 (7)
C2—F11.363 (8)C12—Cl11.738 (5)
C3—C41.384 (13)C13—H130.9300
C3—H30.9300C14—F31.311 (8)
C4—C51.370 (13)C14—F41.328 (7)
C4—H40.9300C14—O21.352 (7)
C5—C61.346 (8)C14—C151.540 (8)
C5—H50.9300C15—F5'1.321 (10)
C6—F21.350 (7)C15—F51.335 (8)
C7—O11.215 (5)C15—F61.355 (8)
C7—N11.341 (6)C15—F6'1.375 (10)
C8—C131.379 (6)C15—H150.9800
C8—N11.395 (6)C15—H15'0.9791
C8—C91.398 (7)N1—H10.8600
C9—C101.375 (7)F5—H15'0.7554
C9—H90.9300F5'—H150.5415
C10—C111.388 (7)
C2—C1—C6116.1 (5)C12—C13—C8119.7 (5)
C2—C1—C7122.1 (5)C12—C13—H13120.2
C6—C1—C7121.6 (5)C8—C13—H13120.2
C3—C2—F1119.6 (8)F3—C14—F4102.1 (6)
C3—C2—C1123.7 (8)F3—C14—O2113.3 (5)
F1—C2—C1116.7 (6)F4—C14—O2113.2 (5)
C2—C3—C4117.3 (9)F3—C14—C15114.7 (6)
C2—C3—H3121.4F4—C14—C15108.4 (6)
C4—C3—H3121.4O2—C14—C15105.3 (6)
C5—C4—C3121.8 (7)F5'—C15—F5126.8 (12)
C5—C4—H4119.1F5'—C15—F690.5 (10)
C3—C4—H4119.1F5—C15—F6113.5 (9)
C6—C5—C4118.2 (8)F5'—C15—F6'136.5 (16)
C6—C5—H5120.9F5—C15—F6'65.2 (13)
C4—C5—H5120.9F6—C15—F6'52.4 (12)
C5—C6—F2120.3 (6)F5'—C15—C14111.1 (10)
C5—C6—C1122.8 (7)F5—C15—C14107.3 (8)
F2—C6—C1116.8 (4)F6—C15—C14105.1 (7)
O1—C7—N1124.4 (4)F6'—C15—C14101.2 (13)
O1—C7—C1120.6 (4)F5'—C15—H1521.3
N1—C7—C1115.0 (4)F5—C15—H15109.8
C13—C8—N1122.6 (5)F6—C15—H15110.7
C13—C8—C9119.3 (4)F6'—C15—H15147.7
N1—C8—C9118.1 (4)C14—C15—H15110.3
C10—C9—C8120.1 (4)F5'—C15—H15'102.6
C10—C9—H9120.0F5—C15—H15'33.9
C8—C9—H9120.0F6—C15—H15'144.6
C9—C10—C11121.1 (5)F6'—C15—H15'99.0
C9—C10—Cl2119.3 (4)C14—C15—H15'100.6
C11—C10—Cl2119.6 (4)H15—C15—H15'82.0
C12—C11—C10117.7 (5)C7—N1—C8126.3 (4)
C12—C11—O2121.3 (5)C7—N1—H1116.9
C10—C11—O2120.6 (5)C8—N1—H1116.9
C13—C12—C11122.1 (5)C14—O2—C11117.9 (4)
C13—C12—Cl1118.0 (4)C15—F5—H15'46.3
C11—C12—Cl1119.9 (4)C15—F5'—H1541.2
C6—C1—C2—C31.5 (10)C10—C11—C12—Cl1−179.3 (4)
C7—C1—C2—C3−174.9 (7)O2—C11—C12—Cl16.7 (7)
C6—C1—C2—F1178.3 (5)C11—C12—C13—C81.4 (8)
C7—C1—C2—F11.9 (9)Cl1—C12—C13—C8178.6 (4)
F1—C2—C3—C4−179.0 (8)N1—C8—C13—C12−178.3 (5)
C1—C2—C3—C4−2.3 (13)C9—C8—C13—C12−0.1 (7)
C2—C3—C4—C51.3 (14)F3—C14—C15—F5'159.9 (10)
C3—C4—C5—C60.4 (13)F4—C14—C15—F5'46.6 (12)
C4—C5—C6—F2178.8 (6)O2—C14—C15—F5'−74.8 (11)
C4—C5—C6—C1−1.2 (10)F3—C14—C15—F5−57.7 (10)
C2—C1—C6—C50.4 (8)F4—C14—C15—F5−171.1 (7)
C7—C1—C6—C5176.8 (5)O2—C14—C15—F567.5 (9)
C2—C1—C6—F2−179.7 (5)F3—C14—C15—F663.3 (10)
C7—C1—C6—F2−3.3 (7)F4—C14—C15—F6−50.0 (10)
C2—C1—C7—O1109.9 (6)O2—C14—C15—F6−171.4 (8)
C6—C1—C7—O1−66.3 (7)F3—C14—C15—F6'9.5 (16)
C2—C1—C7—N1−70.5 (7)F4—C14—C15—F6'−103.8 (15)
C6—C1—C7—N1113.3 (5)O2—C14—C15—F6'134.8 (15)
C13—C8—C9—C10−0.2 (7)O1—C7—N1—C8−0.8 (8)
N1—C8—C9—C10178.0 (4)C1—C7—N1—C8179.6 (4)
C8—C9—C10—C11−0.6 (7)C13—C8—N1—C7−33.8 (7)
C8—C9—C10—Cl2178.1 (4)C9—C8—N1—C7148.1 (5)
C9—C10—C11—C121.8 (7)F3—C14—O2—C11−55.4 (7)
Cl2—C10—C11—C12−177.0 (4)F4—C14—O2—C1160.3 (7)
C9—C10—C11—O2175.9 (4)C15—C14—O2—C11178.5 (6)
Cl2—C10—C11—O2−2.9 (6)C12—C11—O2—C14−94.2 (6)
C10—C11—C12—C13−2.2 (8)C10—C11—O2—C1492.0 (6)
O2—C11—C12—C13−176.2 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.002.861 (5)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.862.002.861 (5)174

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Design, synthesis, and biological activity of novel 4-(3,4-dimethoxyphenyl)-2-methylthiazole-5-carboxylic acid derivatives.

Authors:  Chang-Ling Liu; Lin Li; Zheng-Ming Li
Journal:  Bioorg Med Chem       Date:  2004-06-01       Impact factor: 3.641

3.  N-(4-Meth-oxy-phen-yl)maleamic acid.

Authors:  B Thimme Gowda; Miroslav Tokarčík; K Shakuntala; Jozef Kožíšek; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05
  3 in total

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