Literature DB >> 21588404

(±)-2-Methyl-piperazin-1-ium perchlorate.

Cong-Hu Peng1.   

Abstract

In the title compound, C(5)H(13)N(2) (+)·ClO(4) (-), the monoprotonated piperazine ring adopts a chair conformation. In the crystal structure, cations and anions are linked by inter-molecular N-H⋯O and N-H⋯N hydrogen bonds into layers parallel to (01).

Entities:  

Year:  2010        PMID: 21588404      PMCID: PMC3007435          DOI: 10.1107/S160053681002862X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the properties of simple mol­ecular–ionic crystals, see: Czupiński et al. (2002 ▶); Katrusiak & Szafrański (1999 ▶, 2006 ▶).

Experimental

Crystal data

C5H13N2 +·ClO4 M = 200.62 Monoclinic, a = 6.8977 (5) Å b = 8.1292 (6) Å c = 16.2201 (11) Å β = 98.614 (3)° V = 899.25 (11) Å3 Z = 4 Mo Kα radiation μ = 0.41 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.80, T max = 0.90 8953 measured reflections 2055 independent reflections 1541 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.075 wR(F 2) = 0.224 S = 1.05 2055 reflections 109 parameters H-atom parameters constrained Δρmax = 0.86 e Å−3 Δρmin = −0.56 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681002862X/rz2472sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681002862X/rz2472Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H13N2+·ClO4F(000) = 424
Mr = 200.62Dx = 1.482 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71075 Å
Hall symbol: -P 2ynCell parameters from 1541 reflections
a = 6.8977 (5) Åθ = 3.1–27.5°
b = 8.1292 (6) ŵ = 0.41 mm1
c = 16.2201 (11) ÅT = 293 K
β = 98.614 (3)°Block, colourless
V = 899.25 (11) Å30.30 × 0.25 × 0.20 mm
Z = 4
Rigaku SCXmini diffractometer2055 independent reflections
Radiation source: fine-focus sealed tube1541 reflections with I > 2σ(I)
graphiteRint = 0.040
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.1°
ω scansh = −8→8
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −10→10
Tmin = 0.80, Tmax = 0.90l = −21→20
8953 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.075Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.224H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.1123P)2 + 1.4914P] where P = (Fo2 + 2Fc2)/3
2055 reflections(Δ/σ)max < 0.001
109 parametersΔρmax = 0.86 e Å3
0 restraintsΔρmin = −0.56 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4992 (5)0.6921 (5)0.6807 (2)0.0414 (8)
H1B0.59750.77300.70190.050*
H1A0.55250.62330.64070.050*
C20.4487 (5)0.5875 (5)0.7518 (2)0.0406 (8)
H2A0.56440.52670.77590.049*
H2B0.41180.65910.79470.049*
C30.1170 (5)0.5531 (5)0.6809 (2)0.0389 (8)
H3A0.05990.62270.71940.047*
H3B0.02050.47030.66030.047*
C40.1591 (5)0.6579 (5)0.6075 (2)0.0384 (8)
H4A0.20620.58560.56640.046*
C5−0.0190 (7)0.7490 (7)0.5654 (3)0.0646 (13)
H5A0.01520.81170.51960.097*
H5B−0.06560.82180.60480.097*
H5C−0.12010.67160.54520.097*
Cl10.56264 (14)0.19954 (12)0.59443 (6)0.0442 (4)
N10.2890 (5)0.4712 (4)0.7261 (2)0.0392 (7)
H1C0.33050.39410.69290.047*
N20.3194 (4)0.7764 (3)0.63945 (18)0.0352 (7)
H2D0.34940.83690.59660.042*
H2C0.27610.84530.67610.042*
O10.3667 (7)0.1613 (7)0.6079 (3)0.1041 (16)
O20.5363 (11)0.2923 (9)0.5226 (3)0.154 (3)
O30.6614 (5)0.2921 (5)0.6628 (2)0.0759 (11)
O40.6557 (9)0.0550 (9)0.5835 (6)0.215 (5)
U11U22U33U12U13U23
C10.0355 (18)0.044 (2)0.046 (2)−0.0020 (15)0.0098 (15)0.0026 (16)
C20.0404 (19)0.0397 (19)0.0410 (19)0.0043 (15)0.0037 (15)0.0042 (15)
C30.0395 (19)0.0380 (18)0.0401 (18)−0.0068 (15)0.0095 (15)−0.0047 (15)
C40.043 (2)0.0402 (19)0.0315 (17)−0.0016 (15)0.0028 (14)−0.0028 (14)
C50.054 (3)0.079 (3)0.056 (3)0.010 (2)−0.007 (2)0.004 (2)
Cl10.0500 (6)0.0457 (6)0.0378 (5)0.0080 (4)0.0094 (4)−0.0044 (4)
N10.0481 (18)0.0298 (14)0.0415 (16)0.0004 (13)0.0130 (13)0.0016 (12)
N20.0422 (16)0.0319 (15)0.0329 (15)−0.0012 (12)0.0103 (12)0.0013 (12)
O10.089 (3)0.149 (4)0.080 (3)−0.040 (3)0.034 (2)−0.028 (3)
O20.196 (7)0.199 (7)0.067 (3)−0.086 (5)0.017 (3)0.048 (4)
O30.072 (2)0.076 (2)0.074 (2)0.0078 (18)−0.0083 (19)−0.0251 (19)
O40.132 (5)0.151 (5)0.318 (11)0.089 (4)−0.105 (6)−0.155 (7)
C1—N21.485 (5)C4—C51.507 (6)
C1—C21.514 (5)C4—H4A0.9800
C1—H1B0.9700C5—H5A0.9600
C1—H1A0.9700C5—H5B0.9600
C2—N11.465 (5)C5—H5C0.9600
C2—H2A0.9700Cl1—O41.363 (5)
C2—H2B0.9700Cl1—O21.377 (5)
C3—N11.459 (5)Cl1—O31.426 (4)
C3—C41.526 (5)Cl1—O11.436 (4)
C3—H3A0.9700N1—H1C0.8998
C3—H3B0.9700N2—H2D0.9000
C4—N21.500 (5)N2—H2C0.9000
N2—C1—C2109.3 (3)C3—C4—H4A108.5
N2—C1—H1B109.8C4—C5—H5A109.5
C2—C1—H1B109.8C4—C5—H5B109.5
N2—C1—H1A109.8H5A—C5—H5B109.5
C2—C1—H1A109.8C4—C5—H5C109.5
H1B—C1—H1A108.3H5A—C5—H5C109.5
N1—C2—C1113.3 (3)H5B—C5—H5C109.5
N1—C2—H2A108.9O4—Cl1—O2111.5 (6)
C1—C2—H2A108.9O4—Cl1—O3112.1 (3)
N1—C2—H2B108.9O2—Cl1—O3110.9 (3)
C1—C2—H2B108.9O4—Cl1—O1107.8 (5)
H2A—C2—H2B107.7O2—Cl1—O1103.9 (4)
N1—C3—C4114.3 (3)O3—Cl1—O1110.3 (2)
N1—C3—H3A108.7C3—N1—C2111.6 (3)
C4—C3—H3A108.7C3—N1—H1C109.0
N1—C3—H3B108.7C2—N1—H1C109.1
C4—C3—H3B108.7C1—N2—C4112.5 (3)
H3A—C3—H3B107.6C1—N2—H2D109.1
N2—C4—C5110.5 (3)C4—N2—H2D109.1
N2—C4—C3107.8 (3)C1—N2—H2C109.1
C5—C4—C3113.0 (4)C4—N2—H2C109.1
N2—C4—H4A108.5H2D—N2—H2C107.8
C5—C4—H4A108.5
N2—C1—C2—N154.6 (4)C1—C2—N1—C3−52.3 (4)
N1—C3—C4—N2−54.1 (4)C2—C1—N2—C4−57.7 (4)
N1—C3—C4—C5−176.4 (3)C5—C4—N2—C1−179.4 (3)
C4—C3—N1—C252.7 (4)C3—C4—N2—C156.8 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1C···O10.902.383.258 (6)166
N1—H1C···O30.902.543.250 (5)136
N2—H2D···O2i0.902.432.998 (7)121
N2—H2C···N1ii0.901.992.883 (4)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1C⋯O10.902.383.258 (6)166
N1—H1C⋯O30.902.543.250 (5)136
N2—H2D⋯O2i0.902.432.998 (7)121
N2—H2C⋯N1ii0.901.992.883 (4)169

Symmetry codes: (i) ; (ii) .

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Authors:  George M Sheldrick
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