| Literature DB >> 21588404 |
Abstract
In the title compound, C(5)H(13)N(2) (+)·ClO(4) (-), the monoprotonated piperazine ring adopts a chair conformation. In the crystal structure, cations and anions are linked by inter-molecular N-H⋯O and N-H⋯N hydrogen bonds into layers parallel to (01).Entities:
Year: 2010 PMID: 21588404 PMCID: PMC3007435 DOI: 10.1107/S160053681002862X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H13N2+·ClO4− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 1541 reflections |
| θ = 3.1–27.5° | |
| µ = 0.41 mm−1 | |
| β = 98.614 (3)° | Block, colourless |
| 0.30 × 0.25 × 0.20 mm | |
| Rigaku SCXmini diffractometer | 2055 independent reflections |
| Radiation source: fine-focus sealed tube | 1541 reflections with |
| graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 8953 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2055 reflections | (Δ/σ)max < 0.001 |
| 109 parameters | Δρmax = 0.86 e Å−3 |
| 0 restraints | Δρmin = −0.56 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.4992 (5) | 0.6921 (5) | 0.6807 (2) | 0.0414 (8) | |
| H1B | 0.5975 | 0.7730 | 0.7019 | 0.050* | |
| H1A | 0.5525 | 0.6233 | 0.6407 | 0.050* | |
| C2 | 0.4487 (5) | 0.5875 (5) | 0.7518 (2) | 0.0406 (8) | |
| H2A | 0.5644 | 0.5267 | 0.7759 | 0.049* | |
| H2B | 0.4118 | 0.6591 | 0.7947 | 0.049* | |
| C3 | 0.1170 (5) | 0.5531 (5) | 0.6809 (2) | 0.0389 (8) | |
| H3A | 0.0599 | 0.6227 | 0.7194 | 0.047* | |
| H3B | 0.0205 | 0.4703 | 0.6603 | 0.047* | |
| C4 | 0.1591 (5) | 0.6579 (5) | 0.6075 (2) | 0.0384 (8) | |
| H4A | 0.2062 | 0.5856 | 0.5664 | 0.046* | |
| C5 | −0.0190 (7) | 0.7490 (7) | 0.5654 (3) | 0.0646 (13) | |
| H5A | 0.0152 | 0.8117 | 0.5196 | 0.097* | |
| H5B | −0.0656 | 0.8218 | 0.6048 | 0.097* | |
| H5C | −0.1201 | 0.6716 | 0.5452 | 0.097* | |
| Cl1 | 0.56264 (14) | 0.19954 (12) | 0.59443 (6) | 0.0442 (4) | |
| N1 | 0.2890 (5) | 0.4712 (4) | 0.7261 (2) | 0.0392 (7) | |
| H1C | 0.3305 | 0.3941 | 0.6929 | 0.047* | |
| N2 | 0.3194 (4) | 0.7764 (3) | 0.63945 (18) | 0.0352 (7) | |
| H2D | 0.3494 | 0.8369 | 0.5966 | 0.042* | |
| H2C | 0.2761 | 0.8453 | 0.6761 | 0.042* | |
| O1 | 0.3667 (7) | 0.1613 (7) | 0.6079 (3) | 0.1041 (16) | |
| O2 | 0.5363 (11) | 0.2923 (9) | 0.5226 (3) | 0.154 (3) | |
| O3 | 0.6614 (5) | 0.2921 (5) | 0.6628 (2) | 0.0759 (11) | |
| O4 | 0.6557 (9) | 0.0550 (9) | 0.5835 (6) | 0.215 (5) |
| C1 | 0.0355 (18) | 0.044 (2) | 0.046 (2) | −0.0020 (15) | 0.0098 (15) | 0.0026 (16) |
| C2 | 0.0404 (19) | 0.0397 (19) | 0.0410 (19) | 0.0043 (15) | 0.0037 (15) | 0.0042 (15) |
| C3 | 0.0395 (19) | 0.0380 (18) | 0.0401 (18) | −0.0068 (15) | 0.0095 (15) | −0.0047 (15) |
| C4 | 0.043 (2) | 0.0402 (19) | 0.0315 (17) | −0.0016 (15) | 0.0028 (14) | −0.0028 (14) |
| C5 | 0.054 (3) | 0.079 (3) | 0.056 (3) | 0.010 (2) | −0.007 (2) | 0.004 (2) |
| Cl1 | 0.0500 (6) | 0.0457 (6) | 0.0378 (5) | 0.0080 (4) | 0.0094 (4) | −0.0044 (4) |
| N1 | 0.0481 (18) | 0.0298 (14) | 0.0415 (16) | 0.0004 (13) | 0.0130 (13) | 0.0016 (12) |
| N2 | 0.0422 (16) | 0.0319 (15) | 0.0329 (15) | −0.0012 (12) | 0.0103 (12) | 0.0013 (12) |
| O1 | 0.089 (3) | 0.149 (4) | 0.080 (3) | −0.040 (3) | 0.034 (2) | −0.028 (3) |
| O2 | 0.196 (7) | 0.199 (7) | 0.067 (3) | −0.086 (5) | 0.017 (3) | 0.048 (4) |
| O3 | 0.072 (2) | 0.076 (2) | 0.074 (2) | 0.0078 (18) | −0.0083 (19) | −0.0251 (19) |
| O4 | 0.132 (5) | 0.151 (5) | 0.318 (11) | 0.089 (4) | −0.105 (6) | −0.155 (7) |
| C1—N2 | 1.485 (5) | C4—C5 | 1.507 (6) |
| C1—C2 | 1.514 (5) | C4—H4A | 0.9800 |
| C1—H1B | 0.9700 | C5—H5A | 0.9600 |
| C1—H1A | 0.9700 | C5—H5B | 0.9600 |
| C2—N1 | 1.465 (5) | C5—H5C | 0.9600 |
| C2—H2A | 0.9700 | Cl1—O4 | 1.363 (5) |
| C2—H2B | 0.9700 | Cl1—O2 | 1.377 (5) |
| C3—N1 | 1.459 (5) | Cl1—O3 | 1.426 (4) |
| C3—C4 | 1.526 (5) | Cl1—O1 | 1.436 (4) |
| C3—H3A | 0.9700 | N1—H1C | 0.8998 |
| C3—H3B | 0.9700 | N2—H2D | 0.9000 |
| C4—N2 | 1.500 (5) | N2—H2C | 0.9000 |
| N2—C1—C2 | 109.3 (3) | C3—C4—H4A | 108.5 |
| N2—C1—H1B | 109.8 | C4—C5—H5A | 109.5 |
| C2—C1—H1B | 109.8 | C4—C5—H5B | 109.5 |
| N2—C1—H1A | 109.8 | H5A—C5—H5B | 109.5 |
| C2—C1—H1A | 109.8 | C4—C5—H5C | 109.5 |
| H1B—C1—H1A | 108.3 | H5A—C5—H5C | 109.5 |
| N1—C2—C1 | 113.3 (3) | H5B—C5—H5C | 109.5 |
| N1—C2—H2A | 108.9 | O4—Cl1—O2 | 111.5 (6) |
| C1—C2—H2A | 108.9 | O4—Cl1—O3 | 112.1 (3) |
| N1—C2—H2B | 108.9 | O2—Cl1—O3 | 110.9 (3) |
| C1—C2—H2B | 108.9 | O4—Cl1—O1 | 107.8 (5) |
| H2A—C2—H2B | 107.7 | O2—Cl1—O1 | 103.9 (4) |
| N1—C3—C4 | 114.3 (3) | O3—Cl1—O1 | 110.3 (2) |
| N1—C3—H3A | 108.7 | C3—N1—C2 | 111.6 (3) |
| C4—C3—H3A | 108.7 | C3—N1—H1C | 109.0 |
| N1—C3—H3B | 108.7 | C2—N1—H1C | 109.1 |
| C4—C3—H3B | 108.7 | C1—N2—C4 | 112.5 (3) |
| H3A—C3—H3B | 107.6 | C1—N2—H2D | 109.1 |
| N2—C4—C5 | 110.5 (3) | C4—N2—H2D | 109.1 |
| N2—C4—C3 | 107.8 (3) | C1—N2—H2C | 109.1 |
| C5—C4—C3 | 113.0 (4) | C4—N2—H2C | 109.1 |
| N2—C4—H4A | 108.5 | H2D—N2—H2C | 107.8 |
| C5—C4—H4A | 108.5 | ||
| N2—C1—C2—N1 | 54.6 (4) | C1—C2—N1—C3 | −52.3 (4) |
| N1—C3—C4—N2 | −54.1 (4) | C2—C1—N2—C4 | −57.7 (4) |
| N1—C3—C4—C5 | −176.4 (3) | C5—C4—N2—C1 | −179.4 (3) |
| C4—C3—N1—C2 | 52.7 (4) | C3—C4—N2—C1 | 56.8 (4) |
| H··· | ||||
| N1—H1C···O1 | 0.90 | 2.38 | 3.258 (6) | 166 |
| N1—H1C···O3 | 0.90 | 2.54 | 3.250 (5) | 136 |
| N2—H2D···O2i | 0.90 | 2.43 | 2.998 (7) | 121 |
| N2—H2C···N1ii | 0.90 | 1.99 | 2.883 (4) | 169 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.90 | 2.38 | 3.258 (6) | 166 |
| N1—H1 | 0.90 | 2.54 | 3.250 (5) | 136 |
| N2—H2 | 0.90 | 2.43 | 2.998 (7) | 121 |
| N2—H2 | 0.90 | 1.99 | 2.883 (4) | 169 |
Symmetry codes: (i) ; (ii) .