| Literature DB >> 21588397 |
Xiao-Jun Zhao1, Cheng-Jun Hao.
Abstract
The title compound, C(12)H(8)N(2)O(4), crystallizes as a zwitterion in which the pyridyl N atom is protonated. The dihedral angle between the benzene and pyridinium rings is 27.9 (2)°. In the crystal, N-H⋯O hydrogen bonds link adjacent zwitterions into a three-dimensional structure.Entities:
Year: 2010 PMID: 21588397 PMCID: PMC3007415 DOI: 10.1107/S160053681002800X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H8N2O4 | |
| Orthorhombic, | Mo |
| Hall symbol: F 2 -2d | Cell parameters from 638 reflections |
| θ = 2.8–26.3° | |
| µ = 0.12 mm−1 | |
| Needle, colourless | |
| 0.46 × 0.17 × 0.09 mm |
| Bruker SMART 1000 CCD area-detector diffractometer | 1023 independent reflections |
| Radiation source: fine-focus sealed tube | 621 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 4377 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1023 reflections | (Δ/σ)max < 0.001 |
| 163 parameters | Δρmax = 0.18 e Å−3 |
| 1 restraint | Δρmin = −0.22 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| N1 | −0.0034 (3) | 0.07102 (12) | 0.9143 (9) | 0.0630 (15) | |
| N2 | 0.3542 (3) | −0.05673 (10) | 0.8083 (7) | 0.0543 (14) | |
| H2 | 0.3836 | −0.0760 | 0.8109 | 0.065* | |
| O1 | 0.3097 (2) | 0.13480 (9) | 0.5977 (7) | 0.0701 (13) | |
| O2 | 0.2043 (2) | 0.16759 (9) | 0.7037 (7) | 0.0731 (14) | |
| O3 | −0.0420 (2) | 0.09929 (10) | 0.9147 (9) | 0.0919 (17) | |
| O4 | −0.0331 (2) | 0.04219 (10) | 0.9681 (8) | 0.0856 (17) | |
| C1 | 0.2386 (4) | 0.13874 (13) | 0.6766 (9) | 0.0526 (15) | |
| C2 | 0.2001 (3) | 0.10398 (12) | 0.7393 (8) | 0.0435 (14) | |
| C3 | 0.1187 (3) | 0.10352 (12) | 0.7997 (8) | 0.0486 (15) | |
| H3 | 0.0881 | 0.1247 | 0.8046 | 0.058* | |
| C4 | 0.0835 (3) | 0.07138 (12) | 0.8524 (9) | 0.0474 (15) | |
| C5 | 0.1277 (3) | 0.03937 (12) | 0.8486 (8) | 0.0451 (14) | |
| H5 | 0.1020 | 0.0179 | 0.8822 | 0.054* | |
| C6 | 0.2104 (3) | 0.03957 (11) | 0.7944 (7) | 0.0403 (12) | |
| C7 | 0.2461 (3) | 0.07216 (11) | 0.7400 (8) | 0.0428 (14) | |
| H7 | 0.3015 | 0.0727 | 0.7035 | 0.051* | |
| C8 | 0.2731 (3) | −0.05830 (13) | 0.7825 (8) | 0.0508 (15) | |
| H8 | 0.2480 | −0.0807 | 0.7685 | 0.061* | |
| C9 | 0.2244 (3) | −0.02788 (12) | 0.7757 (8) | 0.0475 (14) | |
| H9 | 0.1675 | −0.0300 | 0.7580 | 0.057* | |
| C10 | 0.2600 (3) | 0.00589 (12) | 0.7950 (8) | 0.0420 (13) | |
| C11 | 0.3461 (3) | 0.00687 (12) | 0.8235 (9) | 0.0522 (15) | |
| H11 | 0.3734 | 0.0288 | 0.8378 | 0.063* | |
| C12 | 0.3890 (3) | −0.02476 (13) | 0.8300 (9) | 0.0575 (17) | |
| H12 | 0.4459 | −0.0238 | 0.8507 | 0.069* |
| N1 | 0.044 (3) | 0.056 (3) | 0.089 (4) | 0.001 (2) | 0.002 (3) | −0.004 (3) |
| N2 | 0.055 (3) | 0.036 (2) | 0.072 (4) | 0.014 (2) | 0.003 (3) | 0.005 (3) |
| O1 | 0.063 (3) | 0.041 (2) | 0.106 (4) | −0.0047 (18) | 0.024 (3) | 0.005 (2) |
| O2 | 0.066 (3) | 0.0369 (19) | 0.116 (4) | 0.0041 (18) | 0.007 (3) | 0.011 (3) |
| O3 | 0.063 (2) | 0.065 (3) | 0.149 (5) | 0.020 (2) | 0.030 (3) | 0.006 (3) |
| O4 | 0.056 (2) | 0.058 (2) | 0.143 (5) | −0.009 (2) | 0.019 (3) | 0.012 (3) |
| C1 | 0.057 (4) | 0.035 (3) | 0.066 (4) | −0.003 (3) | 0.001 (3) | 0.011 (3) |
| C2 | 0.042 (3) | 0.032 (2) | 0.057 (4) | −0.001 (2) | −0.001 (3) | 0.000 (2) |
| C3 | 0.046 (3) | 0.030 (3) | 0.070 (4) | 0.003 (2) | −0.001 (3) | −0.002 (3) |
| C4 | 0.041 (3) | 0.034 (3) | 0.067 (4) | −0.001 (2) | 0.000 (3) | 0.000 (3) |
| C5 | 0.046 (3) | 0.031 (3) | 0.058 (4) | 0.001 (2) | 0.001 (3) | 0.003 (3) |
| C6 | 0.040 (3) | 0.031 (3) | 0.049 (3) | −0.002 (2) | −0.001 (3) | 0.000 (3) |
| C7 | 0.035 (3) | 0.031 (2) | 0.061 (4) | 0.001 (2) | 0.000 (3) | −0.001 (3) |
| C8 | 0.057 (4) | 0.032 (3) | 0.063 (4) | 0.001 (2) | −0.003 (3) | 0.008 (3) |
| C9 | 0.044 (3) | 0.038 (3) | 0.060 (4) | −0.004 (2) | 0.001 (3) | 0.001 (3) |
| C10 | 0.045 (3) | 0.031 (3) | 0.051 (4) | 0.002 (2) | 0.003 (3) | 0.003 (2) |
| C11 | 0.051 (3) | 0.035 (3) | 0.070 (4) | −0.001 (2) | 0.004 (3) | 0.004 (3) |
| C12 | 0.049 (3) | 0.042 (3) | 0.082 (5) | 0.005 (3) | 0.005 (3) | 0.008 (3) |
| N1—O3 | 1.220 (5) | C5—C6 | 1.388 (6) |
| N1—O4 | 1.233 (5) | C5—H5 | 0.9300 |
| N1—C4 | 1.469 (7) | C6—C7 | 1.395 (6) |
| N2—C12 | 1.322 (6) | C6—C10 | 1.485 (6) |
| N2—C8 | 1.323 (6) | C7—H7 | 0.9300 |
| N2—H2 | 0.8600 | C8—C9 | 1.376 (6) |
| O1—C1 | 1.284 (6) | C8—H8 | 0.9300 |
| O2—C1 | 1.221 (6) | C9—C10 | 1.386 (6) |
| C1—C2 | 1.500 (6) | C9—H9 | 0.9300 |
| C2—C3 | 1.381 (7) | C10—C11 | 1.403 (6) |
| C2—C7 | 1.394 (6) | C11—C12 | 1.364 (6) |
| C3—C4 | 1.374 (6) | C11—H11 | 0.9300 |
| C3—H3 | 0.9300 | C12—H12 | 0.9300 |
| C4—C5 | 1.386 (6) | ||
| O3—N1—O4 | 123.2 (5) | C5—C6—C7 | 118.6 (4) |
| O3—N1—C4 | 118.6 (5) | C5—C6—C10 | 120.8 (4) |
| O4—N1—C4 | 118.1 (4) | C7—C6—C10 | 120.6 (4) |
| C12—N2—C8 | 118.4 (4) | C2—C7—C6 | 121.1 (4) |
| C12—N2—H2 | 120.8 | C2—C7—H7 | 119.4 |
| C8—N2—H2 | 120.8 | C6—C7—H7 | 119.4 |
| O2—C1—O1 | 125.0 (5) | N2—C8—C9 | 122.2 (5) |
| O2—C1—C2 | 121.3 (5) | N2—C8—H8 | 118.9 |
| O1—C1—C2 | 113.7 (4) | C9—C8—H8 | 118.9 |
| C3—C2—C7 | 119.6 (4) | C8—C9—C10 | 120.2 (4) |
| C3—C2—C1 | 119.8 (4) | C8—C9—H9 | 119.9 |
| C7—C2—C1 | 120.7 (4) | C10—C9—H9 | 119.9 |
| C4—C3—C2 | 119.3 (4) | C9—C10—C11 | 116.6 (4) |
| C4—C3—H3 | 120.4 | C9—C10—C6 | 122.6 (4) |
| C2—C3—H3 | 120.4 | C11—C10—C6 | 120.8 (4) |
| C3—C4—C5 | 121.8 (4) | C12—C11—C10 | 119.0 (5) |
| C3—C4—N1 | 119.0 (4) | C12—C11—H11 | 120.5 |
| C5—C4—N1 | 119.2 (5) | C10—C11—H11 | 120.5 |
| C4—C5—C6 | 119.6 (4) | N2—C12—C11 | 123.6 (5) |
| C4—C5—H5 | 120.2 | N2—C12—H12 | 118.2 |
| C6—C5—H5 | 120.2 | C11—C12—H12 | 118.2 |
| O2—C1—C2—C3 | 11.2 (9) | C3—C2—C7—C6 | 2.3 (9) |
| O1—C1—C2—C3 | −170.0 (5) | C1—C2—C7—C6 | −178.7 (5) |
| O2—C1—C2—C7 | −167.8 (6) | C5—C6—C7—C2 | −0.1 (8) |
| O1—C1—C2—C7 | 10.9 (8) | C10—C6—C7—C2 | −179.8 (5) |
| C7—C2—C3—C4 | −2.6 (8) | C12—N2—C8—C9 | 0.7 (9) |
| C1—C2—C3—C4 | 178.4 (5) | N2—C8—C9—C10 | 0.4 (9) |
| C2—C3—C4—C5 | 0.7 (8) | C8—C9—C10—C11 | −0.8 (8) |
| C2—C3—C4—N1 | −179.3 (6) | C8—C9—C10—C6 | −178.2 (5) |
| O3—N1—C4—C3 | 0.9 (8) | C5—C6—C10—C9 | 25.9 (8) |
| O4—N1—C4—C3 | −177.2 (6) | C7—C6—C10—C9 | −154.3 (5) |
| O3—N1—C4—C5 | −179.0 (6) | C5—C6—C10—C11 | −151.4 (6) |
| O4—N1—C4—C5 | 2.8 (8) | C7—C6—C10—C11 | 28.4 (8) |
| C3—C4—C5—C6 | 1.5 (9) | C9—C10—C11—C12 | 0.2 (9) |
| N1—C4—C5—C6 | −178.5 (5) | C6—C10—C11—C12 | 177.6 (5) |
| C4—C5—C6—C7 | −1.8 (8) | C8—N2—C12—C11 | −1.3 (10) |
| C4—C5—C6—C10 | 178.0 (5) | C10—C11—C12—N2 | 0.9 (10) |
| H··· | ||||
| N2—H2···O1i | 0.86 | 1.74 | 2.592 (5) | 172 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯O1i | 0.86 | 1.74 | 2.592 (5) | 172 |
Symmetry code: (i) .