Literature DB >> 21588397

3-Nitro-5-(4-pyridinio)benzoate.

Xiao-Jun Zhao1, Cheng-Jun Hao.   

Abstract

The title compound, C(12)H(8)N(2)O(4), crystallizes as a zwitterion in which the pyridyl N atom is protonated. The dihedral angle between the benzene and pyridinium rings is 27.9 (2)°. In the crystal, N-H⋯O hydrogen bonds link adjacent zwitterions into a three-dimensional structure.

Entities:  

Year:  2010        PMID: 21588397      PMCID: PMC3007415          DOI: 10.1107/S160053681002800X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was reacted with MgCl2 under hydrothermal conditions in an attempt to obtain a new coordination polymer as part of our investigation of pyridine caboxylate coordination polymers. For the advantages of hydro­thermal synthesis, see: Feng et al. (2001 ▶); Tao et al. (2001 ▶). For the crystal structures of coord­in­ation polymers involving 4-pyridine­carboxyl­ate ligands, see: Lu et al. (2003 ▶).

Experimental

Crystal data

C12H8N2O4 M = 244.20 Orthorhombic, a = 16.1215 (14) Å b = 37.126 (3) Å c = 7.1317 (8) Å V = 4268.5 (7) Å3 Z = 16 Mo Kα radiation μ = 0.12 mm−1 T = 298 K 0.46 × 0.17 × 0.09 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.948, T max = 0.990 4377 measured reflections 1023 independent reflections 621 reflections with I > 2σ(I) R int = 0.110

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.118 S = 1.02 1023 reflections 163 parameters 1 restraint H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681002800X/wn2400sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681002800X/wn2400Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H8N2O4F(000) = 2016
Mr = 244.20Dx = 1.520 Mg m3
Orthorhombic, Fdd2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: F 2 -2dCell parameters from 638 reflections
a = 16.1215 (14) Åθ = 2.8–26.3°
b = 37.126 (3) ŵ = 0.12 mm1
c = 7.1317 (8) ÅT = 298 K
V = 4268.5 (7) Å3Needle, colourless
Z = 160.46 × 0.17 × 0.09 mm
Bruker SMART 1000 CCD area-detector diffractometer1023 independent reflections
Radiation source: fine-focus sealed tube621 reflections with I > 2σ(I)
graphiteRint = 0.110
φ and ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −19→11
Tmin = 0.948, Tmax = 0.990k = −43→43
4377 measured reflectionsl = −8→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0406P)2 + 0.170P] where P = (Fo2 + 2Fc2)/3
1023 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.18 e Å3
1 restraintΔρmin = −0.22 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.0034 (3)0.07102 (12)0.9143 (9)0.0630 (15)
N20.3542 (3)−0.05673 (10)0.8083 (7)0.0543 (14)
H20.3836−0.07600.81090.065*
O10.3097 (2)0.13480 (9)0.5977 (7)0.0701 (13)
O20.2043 (2)0.16759 (9)0.7037 (7)0.0731 (14)
O3−0.0420 (2)0.09929 (10)0.9147 (9)0.0919 (17)
O4−0.0331 (2)0.04219 (10)0.9681 (8)0.0856 (17)
C10.2386 (4)0.13874 (13)0.6766 (9)0.0526 (15)
C20.2001 (3)0.10398 (12)0.7393 (8)0.0435 (14)
C30.1187 (3)0.10352 (12)0.7997 (8)0.0486 (15)
H30.08810.12470.80460.058*
C40.0835 (3)0.07138 (12)0.8524 (9)0.0474 (15)
C50.1277 (3)0.03937 (12)0.8486 (8)0.0451 (14)
H50.10200.01790.88220.054*
C60.2104 (3)0.03957 (11)0.7944 (7)0.0403 (12)
C70.2461 (3)0.07216 (11)0.7400 (8)0.0428 (14)
H70.30150.07270.70350.051*
C80.2731 (3)−0.05830 (13)0.7825 (8)0.0508 (15)
H80.2480−0.08070.76850.061*
C90.2244 (3)−0.02788 (12)0.7757 (8)0.0475 (14)
H90.1675−0.03000.75800.057*
C100.2600 (3)0.00589 (12)0.7950 (8)0.0420 (13)
C110.3461 (3)0.00687 (12)0.8235 (9)0.0522 (15)
H110.37340.02880.83780.063*
C120.3890 (3)−0.02476 (13)0.8300 (9)0.0575 (17)
H120.4459−0.02380.85070.069*
U11U22U33U12U13U23
N10.044 (3)0.056 (3)0.089 (4)0.001 (2)0.002 (3)−0.004 (3)
N20.055 (3)0.036 (2)0.072 (4)0.014 (2)0.003 (3)0.005 (3)
O10.063 (3)0.041 (2)0.106 (4)−0.0047 (18)0.024 (3)0.005 (2)
O20.066 (3)0.0369 (19)0.116 (4)0.0041 (18)0.007 (3)0.011 (3)
O30.063 (2)0.065 (3)0.149 (5)0.020 (2)0.030 (3)0.006 (3)
O40.056 (2)0.058 (2)0.143 (5)−0.009 (2)0.019 (3)0.012 (3)
C10.057 (4)0.035 (3)0.066 (4)−0.003 (3)0.001 (3)0.011 (3)
C20.042 (3)0.032 (2)0.057 (4)−0.001 (2)−0.001 (3)0.000 (2)
C30.046 (3)0.030 (3)0.070 (4)0.003 (2)−0.001 (3)−0.002 (3)
C40.041 (3)0.034 (3)0.067 (4)−0.001 (2)0.000 (3)0.000 (3)
C50.046 (3)0.031 (3)0.058 (4)0.001 (2)0.001 (3)0.003 (3)
C60.040 (3)0.031 (3)0.049 (3)−0.002 (2)−0.001 (3)0.000 (3)
C70.035 (3)0.031 (2)0.061 (4)0.001 (2)0.000 (3)−0.001 (3)
C80.057 (4)0.032 (3)0.063 (4)0.001 (2)−0.003 (3)0.008 (3)
C90.044 (3)0.038 (3)0.060 (4)−0.004 (2)0.001 (3)0.001 (3)
C100.045 (3)0.031 (3)0.051 (4)0.002 (2)0.003 (3)0.003 (2)
C110.051 (3)0.035 (3)0.070 (4)−0.001 (2)0.004 (3)0.004 (3)
C120.049 (3)0.042 (3)0.082 (5)0.005 (3)0.005 (3)0.008 (3)
N1—O31.220 (5)C5—C61.388 (6)
N1—O41.233 (5)C5—H50.9300
N1—C41.469 (7)C6—C71.395 (6)
N2—C121.322 (6)C6—C101.485 (6)
N2—C81.323 (6)C7—H70.9300
N2—H20.8600C8—C91.376 (6)
O1—C11.284 (6)C8—H80.9300
O2—C11.221 (6)C9—C101.386 (6)
C1—C21.500 (6)C9—H90.9300
C2—C31.381 (7)C10—C111.403 (6)
C2—C71.394 (6)C11—C121.364 (6)
C3—C41.374 (6)C11—H110.9300
C3—H30.9300C12—H120.9300
C4—C51.386 (6)
O3—N1—O4123.2 (5)C5—C6—C7118.6 (4)
O3—N1—C4118.6 (5)C5—C6—C10120.8 (4)
O4—N1—C4118.1 (4)C7—C6—C10120.6 (4)
C12—N2—C8118.4 (4)C2—C7—C6121.1 (4)
C12—N2—H2120.8C2—C7—H7119.4
C8—N2—H2120.8C6—C7—H7119.4
O2—C1—O1125.0 (5)N2—C8—C9122.2 (5)
O2—C1—C2121.3 (5)N2—C8—H8118.9
O1—C1—C2113.7 (4)C9—C8—H8118.9
C3—C2—C7119.6 (4)C8—C9—C10120.2 (4)
C3—C2—C1119.8 (4)C8—C9—H9119.9
C7—C2—C1120.7 (4)C10—C9—H9119.9
C4—C3—C2119.3 (4)C9—C10—C11116.6 (4)
C4—C3—H3120.4C9—C10—C6122.6 (4)
C2—C3—H3120.4C11—C10—C6120.8 (4)
C3—C4—C5121.8 (4)C12—C11—C10119.0 (5)
C3—C4—N1119.0 (4)C12—C11—H11120.5
C5—C4—N1119.2 (5)C10—C11—H11120.5
C4—C5—C6119.6 (4)N2—C12—C11123.6 (5)
C4—C5—H5120.2N2—C12—H12118.2
C6—C5—H5120.2C11—C12—H12118.2
O2—C1—C2—C311.2 (9)C3—C2—C7—C62.3 (9)
O1—C1—C2—C3−170.0 (5)C1—C2—C7—C6−178.7 (5)
O2—C1—C2—C7−167.8 (6)C5—C6—C7—C2−0.1 (8)
O1—C1—C2—C710.9 (8)C10—C6—C7—C2−179.8 (5)
C7—C2—C3—C4−2.6 (8)C12—N2—C8—C90.7 (9)
C1—C2—C3—C4178.4 (5)N2—C8—C9—C100.4 (9)
C2—C3—C4—C50.7 (8)C8—C9—C10—C11−0.8 (8)
C2—C3—C4—N1−179.3 (6)C8—C9—C10—C6−178.2 (5)
O3—N1—C4—C30.9 (8)C5—C6—C10—C925.9 (8)
O4—N1—C4—C3−177.2 (6)C7—C6—C10—C9−154.3 (5)
O3—N1—C4—C5−179.0 (6)C5—C6—C10—C11−151.4 (6)
O4—N1—C4—C52.8 (8)C7—C6—C10—C1128.4 (8)
C3—C4—C5—C61.5 (9)C9—C10—C11—C120.2 (9)
N1—C4—C5—C6−178.5 (5)C6—C10—C11—C12177.6 (5)
C4—C5—C6—C7−1.8 (8)C8—N2—C12—C11−1.3 (10)
C4—C5—C6—C10178.0 (5)C10—C11—C12—N20.9 (10)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.861.742.592 (5)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.861.742.592 (5)172

Symmetry code: (i) .

  2 in total

1.  New materials in hydrothermal synthesis.

Authors:  S Feng; R Xu
Journal:  Acc Chem Res       Date:  2001-03       Impact factor: 22.384

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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