Literature DB >> 21588394

Monoclinic form I of clopidogrel hydrogen sulfate from powder diffraction data.

Vladimir V Chernyshev, Sergey V Pirogov, Irina N Shishkina, Yurii A Velikodny.   

Abstract

The asymmetric unit of the title compound, C(16)H(17)ClNO(2)S(+)·HSO(4) (-), (I) [systematic name: (+)-(S)-5-[(2-chloro-phen-yl)(meth-oxy-carbon-yl)meth-yl]-4,5,6,7-tetra-hydro-thieno[3,2-c]pyridin-5-ium hydrogen sulfate], contains two independent cations of clopidogrel and two independent hydrogensulfate anions. The two independent cations are of similar conformation; however, this differs from that observed in ortho-rhom-bic form (II) [Bousquet et al. (2003 ▶). US Patent No. 6 504 030]. The H-N-C(chiral)-H fragment shows a trans conformation in both independent cations in (I) and a gauche conformation in (II). In (I), classical inter-molecular N-H⋯O and O-H⋯O hydrogen bonds link two independent cations and two independent anions into an isolated cluster, in which two cations inter-act with one anion only via N-H⋯O hydrogen bonds. Weak inter-molecular C-H⋯O hydrogen bonds further consolidate the crystal packing.

Entities:  

Year:  2010        PMID: 21588394      PMCID: PMC3007342          DOI: 10.1107/S1600536810028783

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the characterization of six polymorphic forms of Clopidogrel hydrogensulfate, see: Badorc & Frehel (1989 ▶) (form I); Bousquet et al. (2003 ▶) (ortho­rhom­bic form II); Lifshitz-Liron et al. (2006 ▶) (forms III-VI). For recent studies of forms I and II, see: Raijada et al. (2010 ▶); Zupancic et al. (2010 ▶); Srivastava et al. (2010 ▶); Song et al. (2010 ▶). For details of the indexing algorithm, see: Werner et al. (1985 ▶). The methodology of the refinement (including applied restraints and constraints) was described in detail by Chernyshev et al. (2009 ▶).

Experimental

Crystal data

C16H17ClNO2SHSO4 M = 419.89 Monoclinic, a = 10.4315 (12) Å b = 15.3345 (18) Å c = 12.6320 (16) Å β = 113.28 (2)° V = 1856.1 (5) Å3 Z = 4 Cu Kα1 radiation, λ = 1.54059 Å μ = 4.23 mm−1 T = 295 K Flat sheet, 15 × 1 mm

Data collection

Guinier camera G670 diffractometer Specimen mounting: thin layer in the specimen holder of the camera Data collection mode: transmission Scan method: continuous 2θmin = 4.00°, 2θmax = 90.00°, 2θstep = 0.01°

Refinement

R p = 0.019 R wp = 0.025 R exp = 0.015 R Bragg = 0.049 χ2 = 2.982 8601 data points 205 parameters 155 restraints H-atom parameters not refined Data collection: G670 Imaging Plate Guinier Camera Software (Huber, 2002 ▶); cell refinement: MRIA (Zlokazov & Chernyshev, 1992 ▶); data reduction: G670 Imaging Plate Guinier Camera Software; method used to solve structure: simulated annealing (Zhukov et al., 2001 ▶); program(s) used to refine structure: MRIA; molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: MRIA and SHELXL97 (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810028783/lh5082sup1.cif Rietveld powder data: contains datablocks I. DOI: 10.1107/S1600536810028783/lh5082Isup2.rtv Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H17ClNO2S+·HSO4Dx = 1.503 Mg m3
Mr = 419.89Melting point: 455(3) K
Monoclinic, P21Cu Kα1 radiation, λ = 1.54059 Å
a = 10.4315 (12) ŵ = 4.23 mm1
b = 15.3345 (18) ÅT = 295 K
c = 12.6320 (16) ÅParticle morphology: plate
β = 113.28 (2)°white
V = 1856.1 (5) Å3flat sheet, 15 × 1 mm
Z = 4Specimen preparation: Prepared at 295 K and 101 kPa
F(000) = 872
Guinier camera G670 diffractometerData collection mode: transmission
Radiation source: line-focus sealed tubeScan method: continuous
Curved Germanium (111)min = 4.00°, 2θmax = 90.00°, 2θstep = 0.01°
Specimen mounting: thin layer in the specimen holder of the camera
Refinement on InetProfile function: split-type pseudo-Voigt (Toraya, 1986)
Least-squares matrix: full with fixed elements per cycle205 parameters
Rp = 0.019155 restraints
Rwp = 0.02542 constraints
Rexp = 0.015H-atom parameters not refined
RBragg = 0.049Weighting scheme based on measured s.u.'s
χ2 = 2.982(Δ/σ)max = 0.001
8601 data pointsBackground function: Chebyshev polynomial up to the 5th order
Excluded region(s): nonePreferred orientation correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Cl1A0.4095 (4)0.6092 (3)1.1269 (4)0.0731 (15)*
S1A−0.2971 (4)0.6556 (3)0.6216 (4)0.0642 (15)*
O1A0.2960 (8)0.9086 (7)0.9643 (8)0.065 (3)*
O2A0.2551 (8)0.8678 (6)1.1168 (7)0.065 (4)*
C2A−0.2033 (15)0.5796 (11)0.5834 (13)0.066 (6)*
H2A−0.24060.54480.51810.079*
C3A−0.0682 (14)0.5760 (10)0.6594 (12)0.065 (6)*
H3A−0.00300.53650.65470.078*
C4A0.1068 (13)0.6546 (11)0.8382 (12)0.065 (5)*
H4A10.12570.61250.89990.078*
H4A20.17510.64630.80480.078*
N5A0.1194 (10)0.7458 (9)0.8865 (9)0.065 (4)*
H5A0.12120.78310.83100.078*
C6A−0.0077 (15)0.7685 (9)0.9103 (12)0.066 (6)*
H6A10.00630.82550.94640.079*
H6A2−0.01610.72660.96470.079*
C7A−0.1428 (14)0.7696 (10)0.8044 (12)0.065 (6)*
H7A1−0.22140.77280.82690.078*
H7A2−0.14550.82010.75740.078*
C8A0.2536 (14)0.7586 (10)0.9906 (12)0.065 (6)*
H8A0.24910.72621.05590.078*
C9A0.3733 (14)0.7242 (10)0.9634 (12)0.065 (6)*
C10A0.4519 (12)0.6534 (11)1.0198 (12)0.065 (6)*
C11A0.5690 (13)0.6242 (10)1.0020 (12)0.065 (6)*
H11A0.62230.57661.04060.078*
C12A0.5986 (14)0.6727 (11)0.9213 (12)0.065 (6)*
H12A0.67030.65290.90130.078*
C13A0.5311 (13)0.7470 (11)0.8691 (12)0.065 (5)*
H13A0.56170.77920.82130.078*
C14A0.4160 (14)0.7729 (9)0.8893 (12)0.065 (6)*
H14A0.36690.82260.85360.078*
C15A0.2739 (15)0.8538 (10)1.0203 (12)0.065 (5)*
C16A0.2910 (14)0.9531 (10)1.1684 (13)0.066 (6)*
H16A0.27310.95531.23730.098*
H16B0.23570.99641.11510.098*
H16C0.38810.96421.18730.098*
C17A−0.1513 (14)0.6881 (10)0.7374 (12)0.065 (6)*
C18A−0.0391 (13)0.6396 (10)0.7466 (12)0.065 (6)*
Cl1B0.4361 (4)0.7397 (3)0.3437 (4)0.0692 (14)*
S1B−0.3489 (4)0.8614 (3)0.1741 (4)0.0670 (16)*
O1B0.1492 (9)0.6692 (7)0.5994 (8)0.072 (4)*
O2B0.3318 (9)0.6156 (6)0.5793 (8)0.072 (4)*
C2B−0.2713 (14)0.9258 (11)0.1059 (12)0.072 (6)*
H2B−0.31890.96640.04930.086*
C3B−0.1318 (13)0.9106 (12)0.1440 (12)0.072 (6)*
H3B−0.07320.93780.11460.087*
C4B0.0592 (15)0.8170 (11)0.2903 (13)0.072 (6)*
H4B10.12220.86650.31240.086*
H4B20.08220.78190.23630.086*
N5B0.0783 (11)0.7634 (8)0.3955 (10)0.072 (5)*
H5B0.06690.80060.44720.086*
C6B−0.0383 (15)0.6974 (10)0.3650 (13)0.072 (6)*
H6B1−0.01910.65780.42930.086*
H6B2−0.04110.66340.29930.086*
C7B−0.1796 (14)0.7400 (12)0.3363 (12)0.072 (6)*
H7B1−0.25350.69850.29740.086*
H7B2−0.18830.75870.40650.086*
C8B0.2241 (14)0.7255 (10)0.4537 (13)0.072 (6)*
H8B0.24380.68820.39890.086*
C9B0.3321 (15)0.7989 (10)0.4937 (13)0.071 (6)*
C10B0.4343 (15)0.8091 (11)0.4515 (13)0.072 (6)*
C11B0.5344 (14)0.8730 (10)0.4922 (12)0.072 (6)*
H11B0.60130.87960.46130.087*
C12B0.5345 (15)0.9267 (11)0.5787 (12)0.072 (6)*
H12B0.60450.96830.60830.086*
C13B0.4337 (13)0.9206 (11)0.6231 (13)0.072 (6)*
H13B0.43100.95990.67830.086*
C14B0.3367 (14)0.8543 (11)0.5828 (13)0.072 (6)*
H14B0.27240.84640.61620.087*
C15B0.2303 (14)0.6716 (12)0.5555 (13)0.072 (6)*
C16B0.3275 (14)0.5400 (11)0.6458 (12)0.072 (6)*
H16D0.40710.50380.65790.108*
H16E0.24360.50760.60490.108*
H16F0.32890.55830.71900.108*
C17B−0.1919 (15)0.8163 (11)0.2605 (13)0.072 (6)*
C18B−0.0874 (14)0.8485 (11)0.2336 (12)0.072 (6)*
S2A0.0232 (4)0.9234 (3)0.6166 (4)0.0572 (13)*
O3A0.0642 (12)0.8444 (8)0.6881 (9)0.115 (5)*
O4A−0.1156 (11)0.9512 (8)0.6065 (10)0.115 (5)*
O5A0.1279 (11)0.9964 (8)0.6804 (10)0.115 (5)*
H510.12601.00450.74390.173*
O6A0.0282 (11)0.9101 (10)0.5049 (10)0.115 (4)*
S2B−0.0311 (5)1.0685 (3)0.8780 (4)0.0692 (16)*
O3B−0.0818 (11)1.1589 (9)0.8583 (11)0.132 (5)*
O4B−0.0199 (13)1.0398 (9)0.9921 (11)0.133 (5)*
O5B−0.1420 (12)1.0105 (9)0.7869 (10)0.133 (5)*
H52−0.12641.00870.72830.200*
O6B0.1001 (12)1.0588 (9)0.8650 (10)0.133 (5)*
Cl1A—C10A1.721 (17)O2B—C16B1.44 (2)
S1A—C2A1.709 (18)C2B—C3B1.359 (19)
S1A—C17A1.716 (13)C2B—H2B0.9313
O1A—C15A1.18 (2)C3B—C18B1.41 (2)
O2A—C15A1.33 (2)C3B—H3B0.9305
O2A—C16A1.443 (18)C4B—C18B1.49 (2)
C2A—C3A1.357 (17)C4B—N5B1.51 (2)
C2A—H2A0.9313C4B—H4B10.9717
C3A—C18A1.41 (2)C4B—H4B20.9710
C3A—H3A0.9304N5B—C6B1.511 (19)
C4A—N5A1.51 (2)N5B—C8B1.519 (17)
C4A—C18A1.522 (16)N5B—H5B0.9092
C4A—H4A10.9699C6B—C7B1.52 (2)
C4A—H4A20.9674C6B—H6B10.9690
N5A—C8A1.508 (15)C6B—H6B20.9711
N5A—C6A1.51 (2)C7B—C17B1.49 (2)
N5A—H5A0.9102C7B—H7B10.9698
C6A—C7A1.512 (17)C7B—H7B20.9703
C6A—H6A10.9690C8B—C15B1.51 (2)
C6A—H6A20.9712C8B—C9B1.53 (2)
C7A—C17A1.49 (2)C8B—H8B0.9795
C7A—H7A10.9694C9B—C10B1.38 (3)
C7A—H7A20.9697C9B—C14B1.40 (2)
C8A—C15A1.50 (2)C10B—C11B1.37 (2)
C8A—C9A1.52 (2)C11B—C12B1.37 (2)
C8A—H8A0.9803C11B—H11B0.9312
C9A—C10A1.38 (2)C12B—C13B1.38 (3)
C9A—C14A1.40 (2)C12B—H12B0.9299
C10A—C11A1.40 (2)C13B—C14B1.38 (2)
C11A—C12A1.39 (2)C13B—H13B0.9301
C11A—H11A0.9303C14B—H14B0.9306
C12A—C13A1.36 (2)C16B—H16D0.9596
C12A—H12A0.9298C16B—H16E0.9613
C13A—C14A1.38 (2)C16B—H16F0.9609
C13A—H13A0.9307C17B—C18B1.36 (2)
C14A—H14A0.9297S2A—O6A1.447 (14)
C16A—H16A0.9589S2A—O4A1.466 (13)
C16A—H16B0.9591S2A—O3A1.470 (13)
C16A—H16C0.9607S2A—O5A1.549 (12)
C17A—C18A1.35 (2)O5A—H510.8200
Cl1B—C10B1.733 (18)S2B—O6B1.449 (15)
S1B—C2B1.710 (18)S2B—O4B1.468 (15)
S1B—C17B1.714 (14)S2B—O3B1.469 (15)
O1B—C15B1.18 (2)S2B—O5B1.549 (12)
O2B—C15B1.302 (19)O5B—H520.8200
C2A—S1A—C17A91.5 (7)C18B—C3B—H3B124.2
C15A—O2A—C16A117.1 (12)C18B—C4B—N5B110.7 (14)
C3A—C2A—S1A112.3 (12)C18B—C4B—H4B1109.4
C3A—C2A—H2A123.8N5B—C4B—H4B1109.6
S1A—C2A—H2A123.9C18B—C4B—H4B2109.5
C2A—C3A—C18A111.5 (14)N5B—C4B—H4B2109.7
C2A—C3A—H3A124.3H4B1—C4B—H4B2107.9
C18A—C3A—H3A124.2C4B—N5B—C6B109.1 (10)
N5A—C4A—C18A110.4 (11)C4B—N5B—C8B113.2 (13)
N5A—C4A—H4A1109.4C6B—N5B—C8B114.7 (11)
C18A—C4A—H4A1109.5C4B—N5B—H5B106.5
N5A—C4A—H4A2109.6C6B—N5B—H5B106.4
C18A—C4A—H4A2109.7C8B—N5B—H5B106.4
H4A1—C4A—H4A2108.3N5B—C6B—C7B112.3 (13)
C4A—N5A—C8A112.0 (10)N5B—C6B—H6B1109.2
C4A—N5A—C6A110.4 (11)C7B—C6B—H6B1109.2
C8A—N5A—C6A112.4 (11)N5B—C6B—H6B2109.0
C4A—N5A—H5A107.1C7B—C6B—H6B2109.1
C8A—N5A—H5A107.3H6B1—C6B—H6B2107.9
C6A—N5A—H5A107.2C17B—C7B—C6B108.7 (14)
N5A—C6A—C7A114.3 (13)C17B—C7B—H7B1109.9
N5A—C6A—H6A1108.7C6B—C7B—H7B1110.0
C7A—C6A—H6A1108.7C17B—C7B—H7B2109.9
N5A—C6A—H6A2108.6C6B—C7B—H7B2109.9
C7A—C6A—H6A2108.7H7B1—C7B—H7B2108.3
H6A1—C6A—H6A2107.6C15B—C8B—N5B108.6 (13)
C17A—C7A—C6A108.6 (12)C15B—C8B—C9B110.1 (12)
C17A—C7A—H7A1109.9N5B—C8B—C9B110.1 (12)
C6A—C7A—H7A1110.1C15B—C8B—H8B109.3
C17A—C7A—H7A2109.9N5B—C8B—H8B109.3
C6A—C7A—H7A2110.0C9B—C8B—H8B109.4
H7A1—C7A—H7A2108.4C10B—C9B—C14B117.3 (14)
C15A—C8A—N5A109.6 (11)C10B—C9B—C8B122.5 (15)
C15A—C8A—C9A110.4 (13)C14B—C9B—C8B120.0 (16)
N5A—C8A—C9A108.7 (12)C11B—C10B—C9B121.7 (16)
C15A—C8A—H8A109.3C11B—C10B—Cl1B119.3 (14)
N5A—C8A—H8A109.5C9B—C10B—Cl1B119.0 (11)
C9A—C8A—H8A109.4C12B—C11B—C10B119.3 (16)
C10A—C9A—C14A119.0 (15)C12B—C11B—H11B120.4
C10A—C9A—C8A122.2 (15)C10B—C11B—H11B120.3
C14A—C9A—C8A118.3 (13)C11B—C12B—C13B121.7 (14)
C9A—C10A—C11A123.2 (16)C11B—C12B—H12B119.3
C9A—C10A—Cl1A115.6 (12)C13B—C12B—H12B119.0
C11A—C10A—Cl1A120.8 (11)C12B—C13B—C14B117.8 (16)
C12A—C11A—C10A114.0 (13)C12B—C13B—H13B121.1
C12A—C11A—H11A122.8C14B—C13B—H13B121.1
C10A—C11A—H11A123.2C13B—C14B—C9B122.1 (16)
C13A—C12A—C11A125.4 (16)C13B—C14B—H14B118.9
C13A—C12A—H12A117.3C9B—C14B—H14B119.1
C11A—C12A—H12A117.3O1B—C15B—O2B122.7 (16)
C12A—C13A—C14A118.2 (16)O1B—C15B—C8B128.3 (14)
C12A—C13A—H13A121.0O2B—C15B—C8B108.3 (14)
C14A—C13A—H13A120.8O2B—C16B—H16D109.6
C13A—C14A—C9A119.9 (13)O2B—C16B—H16E109.5
C13A—C14A—H14A120.0H16D—C16B—H16E109.4
C9A—C14A—H14A120.1O2B—C16B—H16F109.6
O1A—C15A—O2A124.9 (15)H16D—C16B—H16F109.4
O1A—C15A—C8A125.7 (15)H16E—C16B—H16F109.3
O2A—C15A—C8A109.3 (14)C18B—C17B—C7B125.1 (13)
O2A—C16A—H16A109.5C18B—C17B—S1B110.7 (12)
O2A—C16A—H16B109.4C7B—C17B—S1B123.0 (12)
H16A—C16A—H16B109.6C17B—C18B—C3B113.9 (13)
O2A—C16A—H16C109.3C17B—C18B—C4B122.3 (14)
H16A—C16A—H16C109.5C3B—C18B—C4B123.7 (15)
H16B—C16A—H16C109.5O6A—S2A—O4A111.8 (7)
C18A—C17A—C7A123.8 (12)O6A—S2A—O3A111.7 (8)
C18A—C17A—S1A111.0 (12)O4A—S2A—O3A109.3 (8)
C7A—C17A—S1A124.1 (11)O6A—S2A—O5A108.6 (8)
C17A—C18A—C3A113.7 (11)O4A—S2A—O5A107.7 (7)
C17A—C18A—C4A123.6 (14)O3A—S2A—O5A107.6 (6)
C3A—C18A—C4A122.7 (13)S2A—O5A—H51109.5
C2B—S1B—C17B91.7 (8)O6B—S2B—O4B111.6 (7)
C15B—O2B—C16B117.0 (13)O6B—S2B—O3B111.8 (8)
C3B—C2B—S1B112.1 (12)O4B—S2B—O3B109.5 (8)
C3B—C2B—H2B123.8O6B—S2B—O5B108.6 (8)
S1B—C2B—H2B124.0O4B—S2B—O5B107.6 (8)
C2B—C3B—C18B111.5 (15)O3B—S2B—O5B107.6 (7)
C2B—C3B—H3B124.3S2B—O5B—H52109.5
D—H···AD—HH···AD···AD—H···A
N5A—H5A···O3A0.911.912.785 (16)161
N5B—H5B···O6A0.911.942.795 (19)157
O5A—H51···O6B0.821.852.640 (17)161
O5B—H52···O4A0.821.822.567 (17)152
C4A—H4A1···O4Bi0.972.353.17 (2)142
C4A—H4A2···O1B0.972.523.225 (17)129
C3B—H3B···O4Bii0.932.413.28 (2)154
C6A—H6A2···O3Bi0.972.313.175 (19)149
C4B—H4B2···O3Biii0.972.233.13 (2)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5A—H5A⋯O3A0.911.912.785 (16)161
N5B—H5B⋯O6A0.911.942.795 (19)157
O5A—H51⋯O6B0.821.852.640 (17)161
O5B—H52⋯O4A0.821.822.567 (17)152
C4A—H4A1⋯O4Bi0.972.353.17 (2)142
C4A—H4A2⋯O1B0.972.523.225 (17)129
C3B—H3B⋯O4Bii0.932.413.28 (2)154
C6A—H6A2⋯O3Bi0.972.313.175 (19)149
C4B—H4B2⋯O3Biii0.972.233.13 (2)154

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Characterization of degradation products of amorphous and polymorphic forms of clopidogrel bisulphate under solid state stress conditions.

Authors:  Dhara K Raijada; Bhagwat Prasad; Amrit Paudel; Ravi P Shah; Saranjit Singh
Journal:  J Pharm Biomed Anal       Date:  2009-05-12       Impact factor: 3.935

3.  Carvedilol dihydrogen phosphate hemihydrate: a powder study.

Authors:  Vladimir V Chernyshev; Alexandre A Machula; Sergei Yu Kukushkin; Yurii A Velikodny
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-29

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  A Comparative Study of Molecular Structure, pKa, Lipophilicity, Solubility, Absorption and Polar Surface Area of Some Antiplatelet Drugs.

Authors:  Milan Remko; Anna Remková; Ria Broer
Journal:  Int J Mol Sci       Date:  2016-03-19       Impact factor: 5.923

  1 in total

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