Literature DB >> 21588391

Methyl 4-(4-chloro-phen-yl)-3,3a,4,4a,5,12c-hexa-hydro-2-thia-naphtho-[1',2':3,2]furo[5,4-b]pyrrolizine-4a-carboxyl-ate.

S Selvanayagam, B Sridhar, K Ravikumar, S Kathiravan, R Raghunathan.   

Abstract

In the title compound, C(25)H(22)ClNO(3)S, both the pyrrolidinyl and thia-zolyl rings adopt envelope conformations whereas the dihydro-pyran ring adopts a half-chair conformation. The chloro-phenyl and naphthalenyl ring systems are oriented at a dihedral angle of 59.7 (1)°. The crystal packing is stabilized by an intra-molecular C-H⋯N hydrogen bond and weak inter-molecular C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21588391      PMCID: PMC3007469          DOI: 10.1107/S1600536810028746

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Nirmala et al. (2009 ▶); Selvanayagam et al. (2010 ▶). For the superposition of related structures, see: Gans & Shalloway (2001 ▶). For ring-puckering and asymmetry parameters, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶).

Experimental

Crystal data

C25H22ClNO3S M = 451.95 Orthorhombic, a = 8.0740 (6) Å b = 12.1109 (8) Å c = 22.1813 (15) Å V = 2169.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 292 K 0.23 × 0.21 × 0.19 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 25236 measured reflections 5157 independent reflections 4559 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.110 S = 1.04 5157 reflections 281 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.15 e Å−3 Absolute structure: Flack (1983 ▶), 2186 Friedel pairs Flack parameter: 0.01 (6) Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810028746/ng5001sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810028746/ng5001Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H22ClNO3SF(000) = 944
Mr = 451.95Dx = 1.384 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 16148 reflections
a = 8.0740 (6) Åθ = 2.1–27.6°
b = 12.1109 (8) ŵ = 0.30 mm1
c = 22.1813 (15) ÅT = 292 K
V = 2169.0 (3) Å3Block, colourless
Z = 40.23 × 0.21 × 0.19 mm
Bruker SMART APEX CCD area-detector diffractometer4559 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.024
graphiteθmax = 28.1°, θmin = 1.8°
ω scansh = −10→10
25236 measured reflectionsk = −15→16
5157 independent reflectionsl = −29→29
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.110w = 1/[σ2(Fo2) + (0.0624P)2 + 0.2403P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
5157 reflectionsΔρmax = 0.28 e Å3
281 parametersΔρmin = −0.15 e Å3
0 restraintsAbsolute structure: Flack (1983), 2186 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.39547 (9)0.77136 (7)0.50917 (3)0.0888 (2)
S1−0.28910 (8)1.01078 (6)0.12895 (3)0.07732 (19)
O10.2032 (2)0.67004 (11)0.21872 (8)0.0728 (5)
O20.2227 (2)0.98332 (12)0.25861 (7)0.0698 (4)
O30.21864 (19)0.84359 (14)0.32261 (7)0.0693 (4)
N1−0.13547 (18)0.82523 (13)0.15571 (7)0.0510 (4)
C10.03210 (19)0.86266 (14)0.17424 (8)0.0409 (3)
H10.04060.94290.16970.049*
C20.1710 (2)0.80726 (14)0.14034 (9)0.0479 (4)
C30.2357 (2)0.85149 (16)0.08546 (9)0.0514 (4)
C40.1812 (3)0.95119 (18)0.05993 (8)0.0586 (5)
H40.10060.99210.07990.070*
C50.2432 (3)0.9901 (3)0.00649 (10)0.0750 (6)
H50.20451.0563−0.00940.090*
C60.3656 (3)0.9295 (3)−0.02419 (11)0.0887 (9)
H60.40550.9545−0.06110.106*
C70.4251 (3)0.8353 (3)−0.00020 (12)0.0814 (8)
H70.50820.7971−0.02040.098*
C80.3646 (3)0.79322 (19)0.05482 (11)0.0647 (6)
C90.4312 (3)0.6989 (2)0.08106 (14)0.0822 (8)
H90.51460.66060.06110.099*
C100.3768 (3)0.66178 (18)0.13531 (15)0.0802 (7)
H100.42700.60100.15320.096*
C110.2438 (2)0.71561 (15)0.16450 (11)0.0596 (5)
C120.0538 (3)0.70803 (15)0.24674 (11)0.0570 (5)
H12A0.05510.68820.28910.068*
H12B−0.04050.67200.22810.068*
C130.0355 (2)0.83233 (13)0.24070 (8)0.0401 (3)
C14−0.1375 (2)0.87464 (13)0.26073 (8)0.0416 (3)
H14−0.13060.95540.26080.050*
C15−0.2488 (2)0.84365 (17)0.20738 (8)0.0511 (4)
H15−0.30790.77500.21660.061*
C16−0.3753 (2)0.9351 (2)0.19154 (10)0.0695 (6)
H16A−0.39220.98370.22580.083*
H16B−0.48090.90280.18040.083*
C17−0.2033 (3)0.8788 (2)0.10353 (9)0.0636 (5)
H17A−0.28940.83360.08560.076*
H17B−0.11750.89100.07360.076*
C18−0.1970 (2)0.84189 (14)0.32279 (8)0.0447 (4)
C19−0.2712 (3)0.74099 (17)0.33593 (10)0.0611 (5)
H19−0.28150.68810.30580.073*
C20−0.3297 (3)0.71840 (19)0.39317 (11)0.0664 (6)
H20−0.38050.65120.40140.080*
C21−0.3120 (3)0.79610 (19)0.43776 (9)0.0585 (5)
C22−0.2352 (3)0.89380 (18)0.42702 (9)0.0594 (5)
H22−0.22100.94500.45790.071*
C23−0.1785 (2)0.91603 (15)0.36953 (9)0.0507 (4)
H23−0.12620.98310.36210.061*
C240.1702 (2)0.89594 (14)0.27369 (8)0.0441 (4)
C250.3441 (3)0.8996 (3)0.35799 (12)0.0927 (9)
H25A0.44690.89970.33630.139*
H25B0.35840.86190.39570.139*
H25C0.30990.97430.36540.139*
U11U22U33U12U13U23
Cl10.0877 (4)0.1109 (5)0.0676 (3)0.0124 (4)0.0262 (3)0.0256 (3)
S10.0624 (3)0.0981 (4)0.0715 (3)0.0219 (3)−0.0083 (3)0.0120 (3)
O10.0696 (9)0.0436 (7)0.1053 (12)0.0169 (7)0.0198 (9)0.0080 (7)
O20.0752 (10)0.0577 (8)0.0764 (9)−0.0241 (8)−0.0210 (8)0.0036 (7)
O30.0568 (8)0.0881 (10)0.0630 (9)−0.0065 (8)−0.0181 (7)0.0179 (8)
N10.0377 (7)0.0616 (9)0.0536 (8)−0.0053 (7)−0.0014 (6)−0.0136 (7)
C10.0361 (7)0.0378 (8)0.0490 (9)−0.0001 (6)−0.0001 (7)−0.0084 (6)
C20.0380 (8)0.0436 (8)0.0622 (10)−0.0047 (7)0.0031 (8)−0.0183 (8)
C30.0396 (9)0.0584 (10)0.0560 (10)−0.0130 (8)0.0042 (7)−0.0246 (8)
C40.0552 (11)0.0717 (12)0.0488 (10)−0.0096 (10)0.0044 (8)−0.0121 (9)
C50.0699 (13)0.1004 (16)0.0549 (11)−0.0197 (13)0.0044 (10)−0.0034 (12)
C60.0671 (15)0.140 (3)0.0586 (14)−0.0266 (18)0.0179 (12)−0.0136 (15)
C70.0525 (12)0.117 (2)0.0743 (15)−0.0184 (14)0.0228 (11)−0.0421 (16)
C80.0415 (9)0.0743 (13)0.0783 (14)−0.0148 (10)0.0118 (9)−0.0323 (11)
C90.0540 (12)0.0672 (14)0.125 (2)−0.0026 (11)0.0293 (14)−0.0387 (15)
C100.0567 (12)0.0478 (11)0.136 (2)0.0087 (10)0.0226 (15)−0.0153 (13)
C110.0502 (10)0.0388 (9)0.0899 (15)−0.0004 (8)0.0112 (10)−0.0130 (9)
C120.0566 (11)0.0405 (9)0.0739 (13)0.0020 (8)0.0084 (10)0.0057 (8)
C130.0345 (7)0.0346 (7)0.0510 (9)0.0001 (6)0.0008 (7)−0.0017 (6)
C140.0337 (7)0.0401 (8)0.0511 (9)−0.0012 (6)0.0019 (7)−0.0004 (7)
C150.0374 (8)0.0641 (10)0.0518 (10)−0.0081 (7)0.0012 (7)−0.0060 (8)
C160.0389 (10)0.1115 (17)0.0580 (11)0.0141 (11)−0.0023 (8)−0.0057 (12)
C170.0440 (9)0.0976 (16)0.0491 (10)−0.0024 (11)−0.0040 (9)−0.0129 (10)
C180.0350 (8)0.0460 (8)0.0530 (9)−0.0001 (7)0.0004 (7)0.0019 (7)
C190.0650 (12)0.0503 (10)0.0680 (12)−0.0094 (9)0.0068 (10)−0.0009 (9)
C200.0659 (13)0.0591 (11)0.0742 (13)−0.0068 (10)0.0101 (11)0.0146 (10)
C210.0465 (10)0.0742 (12)0.0547 (10)0.0105 (10)0.0059 (8)0.0164 (9)
C220.0547 (11)0.0701 (12)0.0535 (10)0.0023 (10)−0.0019 (9)−0.0027 (9)
C230.0442 (9)0.0528 (9)0.0553 (10)−0.0042 (7)−0.0006 (8)−0.0006 (8)
C240.0336 (8)0.0499 (9)0.0489 (9)0.0028 (7)0.0009 (7)−0.0022 (7)
C250.0586 (14)0.150 (3)0.0690 (15)−0.0026 (16)−0.0224 (12)−0.0050 (16)
Cl1—C211.7473 (19)C10—C111.413 (3)
S1—C161.803 (2)C10—H100.9300
S1—C171.831 (2)C12—C131.519 (2)
O1—C111.363 (3)C12—H12A0.9700
O1—C121.433 (3)C12—H12B0.9700
O2—C241.188 (2)C13—C241.520 (2)
O3—C241.316 (2)C13—C141.553 (2)
O3—C251.450 (3)C14—C181.511 (2)
N1—C171.435 (3)C14—C151.533 (2)
N1—C151.484 (2)C14—H140.9800
N1—C11.485 (2)C15—C161.547 (3)
C1—C21.507 (2)C15—H150.9800
C1—C131.519 (2)C16—H16A0.9700
C1—H10.9800C16—H16B0.9700
C2—C111.366 (3)C17—H17A0.9700
C2—C31.429 (3)C17—H17B0.9700
C3—C41.404 (3)C18—C231.380 (3)
C3—C81.429 (3)C18—C191.392 (3)
C4—C51.370 (3)C19—C201.382 (3)
C4—H40.9300C19—H190.9300
C5—C61.406 (4)C20—C211.373 (3)
C5—H50.9300C20—H200.9300
C6—C71.348 (4)C21—C221.357 (3)
C6—H60.9300C22—C231.381 (3)
C7—C81.410 (4)C22—H220.9300
C7—H70.9300C23—H230.9300
C8—C91.390 (4)C25—H25A0.9600
C9—C101.358 (4)C25—H25B0.9600
C9—H90.9300C25—H25C0.9600
C16—S1—C1786.54 (11)C24—C13—C14109.79 (13)
C11—O1—C12117.08 (16)C18—C14—C15116.91 (14)
C24—O3—C25115.36 (19)C18—C14—C13117.39 (14)
C17—N1—C15108.65 (15)C15—C14—C13103.06 (14)
C17—N1—C1115.64 (16)C18—C14—H14106.2
C15—N1—C1107.59 (13)C15—C14—H14106.2
N1—C1—C2113.81 (13)C13—C14—H14106.2
N1—C1—C13102.20 (14)N1—C15—C14105.76 (13)
C2—C1—C13111.28 (14)N1—C15—C16109.84 (16)
N1—C1—H1109.8C14—C15—C16112.78 (16)
C2—C1—H1109.8N1—C15—H15109.5
C13—C1—H1109.8C14—C15—H15109.5
C11—C2—C3118.79 (17)C16—C15—H15109.5
C11—C2—C1119.09 (17)C15—C16—S1106.49 (13)
C3—C2—C1122.02 (16)C15—C16—H16A110.4
C4—C3—C2123.46 (17)S1—C16—H16A110.4
C4—C3—C8117.4 (2)C15—C16—H16B110.4
C2—C3—C8119.1 (2)S1—C16—H16B110.4
C5—C4—C3122.0 (2)H16A—C16—H16B108.6
C5—C4—H4119.0N1—C17—S1106.90 (13)
C3—C4—H4119.0N1—C17—H17A110.3
C4—C5—C6119.7 (3)S1—C17—H17A110.3
C4—C5—H5120.1N1—C17—H17B110.3
C6—C5—H5120.1S1—C17—H17B110.3
C7—C6—C5120.1 (2)H17A—C17—H17B108.6
C7—C6—H6120.0C23—C18—C19117.43 (17)
C5—C6—H6120.0C23—C18—C14118.64 (15)
C6—C7—C8121.6 (2)C19—C18—C14123.92 (16)
C6—C7—H7119.2C20—C19—C18120.9 (2)
C8—C7—H7119.2C20—C19—H19119.6
C9—C8—C7121.7 (2)C18—C19—H19119.6
C9—C8—C3119.2 (2)C21—C20—C19119.39 (19)
C7—C8—C3119.0 (2)C21—C20—H20120.3
C10—C9—C8121.2 (2)C19—C20—H20120.3
C10—C9—H9119.4C22—C21—C20121.25 (18)
C8—C9—H9119.4C22—C21—Cl1119.01 (18)
C9—C10—C11119.9 (2)C20—C21—Cl1119.70 (17)
C9—C10—H10120.0C21—C22—C23118.9 (2)
C11—C10—H10120.0C21—C22—H22120.5
O1—C11—C2124.87 (17)C23—C22—H22120.5
O1—C11—C10113.6 (2)C18—C23—C22122.07 (18)
C2—C11—C10121.5 (2)C18—C23—H23119.0
O1—C12—C13111.22 (16)C22—C23—H23119.0
O1—C12—H12A109.4O2—C24—O3123.72 (17)
C13—C12—H12A109.4O2—C24—C13124.82 (16)
O1—C12—H12B109.4O3—C24—C13111.43 (15)
C13—C12—H12B109.4O3—C25—H25A109.5
H12A—C12—H12B108.0O3—C25—H25B109.5
C12—C13—C1109.08 (15)H25A—C25—H25B109.5
C12—C13—C24112.97 (15)O3—C25—H25C109.5
C1—C13—C24110.94 (14)H25A—C25—H25C109.5
C12—C13—C14112.92 (14)H25B—C25—H25C109.5
C1—C13—C14100.46 (13)
C17—N1—C1—C2−83.59 (19)C2—C1—C13—C14−166.96 (12)
C15—N1—C1—C2154.79 (16)C12—C13—C14—C1853.3 (2)
C17—N1—C1—C13156.33 (15)C1—C13—C14—C18169.33 (14)
C15—N1—C1—C1334.71 (17)C24—C13—C14—C18−73.75 (18)
N1—C1—C2—C11−94.1 (2)C12—C13—C14—C15−76.75 (19)
C13—C1—C2—C1120.8 (2)C1—C13—C14—C1539.28 (16)
N1—C1—C2—C389.84 (19)C24—C13—C14—C15156.20 (14)
C13—C1—C2—C3−155.34 (15)C17—N1—C15—C14−135.34 (16)
C11—C2—C3—C4−173.48 (17)C1—N1—C15—C14−9.46 (19)
C1—C2—C3—C42.6 (3)C17—N1—C15—C16−13.4 (2)
C11—C2—C3—C85.5 (2)C1—N1—C15—C16112.51 (17)
C1—C2—C3—C8−178.41 (15)C18—C14—C15—N1−149.27 (15)
C2—C3—C4—C5−178.47 (18)C13—C14—C15—N1−18.92 (18)
C8—C3—C4—C52.6 (3)C18—C14—C15—C1690.68 (19)
C3—C4—C5—C6−0.2 (3)C13—C14—C15—C16−138.98 (16)
C4—C5—C6—C7−2.0 (4)N1—C15—C16—S1−18.99 (19)
C5—C6—C7—C81.7 (4)C14—C15—C16—S198.69 (16)
C6—C7—C8—C9−176.9 (2)C17—S1—C16—C1534.61 (15)
C6—C7—C8—C30.7 (3)C15—N1—C17—S139.89 (18)
C4—C3—C8—C9174.88 (19)C1—N1—C17—S1−81.16 (16)
C2—C3—C8—C9−4.1 (3)C16—S1—C17—N1−44.10 (15)
C4—C3—C8—C7−2.8 (3)C15—C14—C18—C23−138.51 (17)
C2—C3—C8—C7178.22 (17)C13—C14—C18—C2398.24 (19)
C7—C8—C9—C10177.1 (2)C15—C14—C18—C1941.0 (2)
C3—C8—C9—C10−0.4 (3)C13—C14—C18—C19−82.2 (2)
C8—C9—C10—C113.6 (4)C23—C18—C19—C202.5 (3)
C12—O1—C11—C212.4 (3)C14—C18—C19—C20−176.99 (19)
C12—O1—C11—C10−170.33 (19)C18—C19—C20—C21−1.0 (3)
C3—C2—C11—O1174.65 (18)C19—C20—C21—C22−1.3 (3)
C1—C2—C11—O1−1.6 (3)C19—C20—C21—Cl1176.54 (18)
C3—C2—C11—C10−2.4 (3)C20—C21—C22—C231.9 (3)
C1—C2—C11—C10−178.61 (18)Cl1—C21—C22—C23−175.99 (16)
C9—C10—C11—O1−179.5 (2)C19—C18—C23—C22−2.0 (3)
C9—C10—C11—C2−2.2 (3)C14—C18—C23—C22177.58 (17)
C11—O1—C12—C13−41.6 (3)C21—C22—C23—C18−0.2 (3)
O1—C12—C13—C159.6 (2)C25—O3—C24—O2−0.4 (3)
O1—C12—C13—C24−64.3 (2)C25—O3—C24—C13−178.41 (17)
O1—C12—C13—C14170.33 (16)C12—C13—C24—O2149.37 (19)
N1—C1—C13—C1273.74 (17)C1—C13—C24—O226.5 (2)
C2—C1—C13—C12−48.09 (18)C14—C13—C24—O2−83.6 (2)
N1—C1—C13—C24−161.19 (13)C12—C13—C24—O3−32.6 (2)
C2—C1—C13—C2476.98 (16)C1—C13—C24—O3−155.50 (15)
N1—C1—C13—C14−45.13 (15)C14—C13—C24—O394.37 (17)
Cg is the centroid of the chlorophenyl ring.
D—H···AD—HH···AD···AD—H···A
C12—H12B···N10.972.572.903 (3)100
C25—H25A···Cgi0.962.793.431 (3)125
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the chloro­phenyl ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C12—H12B⋯N10.972.572.903 (3)100
C25—H25ACgi0.962.793.431 (3)125

Symmetry code: (i) .

  5 in total

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Authors:  J D Gans; D Shalloway
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2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-15

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Authors:  S Nirmala; E Theboral Sugi Kamala; L Sudha; S Kathiravan; R Raghunathan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-22

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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