Literature DB >> 21588389

2-Amino-4-methyl-pyridinium 3-carb-oxy-4-hy-droxy-benzene-sulfonate monohydrate.

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

In the crystal structure of the title salt, C(6)H(9)N(2) (+)·C(7)H(5)O(6)S(-)·H(2)O, the water mol-ecule acts as an acceptor of bifurcated N-H⋯O hydrogen bonds from the pyridinium H atom and one H atom of the 2-amino group, forming an R(2) (1)(6) ring. The 3-carb-oxy-4-hy-droxy-benzene-sulfonate anions self-assemble via O-H⋯O hydrogen bonds, leading to supra-molecular chains along the a axis. These chains and R(2) (1)(6) motifs are linked via O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds, forming a layer parallel to the ac plane. There is also an intra-molecular O-H⋯O hydrogen bond in the 3-carb-oxy-4-hy-droxy-benzene-sulfonate anion, generating an S(6) ring motif.

Entities:  

Year:  2010        PMID: 21588389      PMCID: PMC3007430          DOI: 10.1107/S1600536810028539

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of sulfonates, see: Onoda et al. (2001 ▶); Baskar Raj et al. (2003 ▶); Ma et al. (2003 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C6H9N2 +·C7H5O6S−·H2O M = 344.34 Monoclinic, a = 8.3280 (9) Å b = 24.122 (3) Å c = 7.9355 (8) Å β = 112.800 (3)° V = 1469.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 100 K 0.22 × 0.13 × 0.04 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.945, T max = 0.989 19925 measured reflections 5266 independent reflections 3749 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.120 S = 1.03 5266 reflections 272 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.46 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810028539/is2579sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810028539/is2579Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C7H5O6S·H2OF(000) = 720
Mr = 344.34Dx = 1.556 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3564 reflections
a = 8.3280 (9) Åθ = 2.9–31.3°
b = 24.122 (3) ŵ = 0.26 mm1
c = 7.9355 (8) ÅT = 100 K
β = 112.800 (3)°Plate, colourless
V = 1469.6 (3) Å30.22 × 0.13 × 0.04 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer5266 independent reflections
Radiation source: fine-focus sealed tube3749 reflections with I > 2σ(I)
graphiteRint = 0.054
φ and ω scansθmax = 32.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→11
Tmin = 0.945, Tmax = 0.989k = −34→36
19925 measured reflectionsl = −11→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.056P)2 + 0.3252P] where P = (Fo2 + 2Fc2)/3
5266 reflections(Δ/σ)max = 0.001
272 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.46 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.72197 (18)0.06878 (6)0.66805 (18)0.0152 (3)
N20.5709 (2)0.13358 (6)0.4490 (2)0.0198 (3)
C10.7310 (2)0.02604 (7)0.7835 (2)0.0178 (3)
C20.5828 (2)0.00495 (7)0.7925 (2)0.0175 (3)
C30.4197 (2)0.02782 (6)0.6816 (2)0.0150 (3)
C40.4152 (2)0.07114 (7)0.5679 (2)0.0151 (3)
C50.5695 (2)0.09223 (6)0.5591 (2)0.0143 (3)
C60.2550 (2)0.00524 (8)0.6887 (2)0.0210 (3)
S11.05075 (5)0.122233 (15)1.12957 (5)0.01150 (9)
O10.45088 (16)0.26192 (5)0.70255 (16)0.0191 (2)
O20.25121 (14)0.18998 (5)0.77919 (15)0.0163 (2)
O30.38003 (15)0.11993 (5)0.96906 (15)0.0149 (2)
O40.99761 (15)0.08555 (5)1.24394 (14)0.0162 (2)
O51.19053 (14)0.15990 (5)1.23096 (15)0.0169 (2)
O61.08974 (14)0.09095 (4)0.99033 (14)0.0143 (2)
C70.5829 (2)0.22831 (6)0.8014 (2)0.0133 (3)
C80.7498 (2)0.24303 (7)0.8160 (2)0.0160 (3)
C90.8917 (2)0.21104 (6)0.9167 (2)0.0146 (3)
C100.86880 (19)0.16349 (6)1.00593 (19)0.0117 (3)
C110.70415 (19)0.14816 (6)0.99271 (19)0.0118 (3)
C120.55938 (19)0.18022 (6)0.88935 (19)0.0115 (3)
C130.3834 (2)0.16422 (6)0.87474 (19)0.0123 (3)
O1W−0.05262 (17)0.12872 (5)0.54890 (17)0.0207 (3)
H1A0.850 (3)0.0128 (9)0.855 (3)0.031 (6)*
H2A0.592 (3)−0.0256 (8)0.870 (3)0.020 (5)*
H4A0.309 (3)0.0871 (8)0.485 (3)0.018 (5)*
H6A0.161 (3)0.0148 (10)0.581 (3)0.044 (7)*
H6B0.239 (4)0.0168 (10)0.796 (4)0.051 (7)*
H6C0.259 (4)−0.0352 (11)0.695 (4)0.054 (8)*
H9A1.007 (3)0.2204 (8)0.925 (3)0.019 (5)*
H8A0.766 (3)0.2767 (9)0.752 (3)0.027 (5)*
H11A0.683 (3)0.1137 (8)1.054 (3)0.017 (5)*
H1W1−0.027 (3)0.1193 (9)0.457 (3)0.030 (6)*
H2W10.034 (3)0.1488 (10)0.614 (3)0.035 (6)*
H1O10.353 (3)0.2485 (10)0.708 (3)0.038 (6)*
H1O30.280 (3)0.1160 (10)0.969 (3)0.040 (7)*
H1N10.822 (3)0.0824 (9)0.661 (3)0.039 (7)*
H1N20.671 (3)0.1437 (9)0.450 (3)0.031 (6)*
H2N20.471 (4)0.1469 (11)0.379 (3)0.047 (7)*
U11U22U33U12U13U23
N10.0115 (6)0.0191 (6)0.0148 (6)0.0004 (5)0.0047 (5)−0.0003 (5)
N20.0177 (8)0.0222 (7)0.0193 (7)−0.0003 (6)0.0070 (6)0.0056 (5)
C10.0166 (8)0.0182 (7)0.0160 (7)0.0020 (6)0.0035 (6)−0.0001 (6)
C20.0201 (8)0.0166 (7)0.0150 (7)0.0018 (6)0.0060 (6)0.0015 (5)
C30.0159 (8)0.0173 (7)0.0120 (6)−0.0027 (6)0.0057 (6)−0.0030 (5)
C40.0129 (7)0.0191 (7)0.0127 (7)0.0005 (6)0.0044 (6)0.0004 (5)
C50.0148 (7)0.0169 (7)0.0115 (6)0.0004 (6)0.0053 (5)−0.0006 (5)
C60.0204 (9)0.0242 (9)0.0205 (8)−0.0073 (7)0.0100 (7)−0.0015 (6)
S10.00831 (17)0.01437 (17)0.01216 (16)0.00001 (13)0.00434 (12)0.00150 (12)
O10.0124 (6)0.0204 (6)0.0239 (6)0.0034 (4)0.0062 (5)0.0083 (4)
O20.0093 (5)0.0196 (5)0.0186 (5)0.0009 (4)0.0038 (4)0.0017 (4)
O30.0100 (5)0.0166 (5)0.0204 (5)−0.0003 (4)0.0085 (4)0.0033 (4)
O40.0124 (5)0.0206 (6)0.0162 (5)0.0007 (4)0.0062 (4)0.0057 (4)
O50.0108 (5)0.0196 (5)0.0175 (5)−0.0035 (4)0.0023 (4)−0.0011 (4)
O60.0118 (5)0.0169 (5)0.0166 (5)0.0012 (4)0.0079 (4)0.0000 (4)
C70.0114 (7)0.0147 (7)0.0134 (6)0.0018 (5)0.0044 (5)0.0023 (5)
C80.0132 (7)0.0172 (7)0.0188 (7)−0.0005 (6)0.0075 (6)0.0044 (6)
C90.0110 (7)0.0168 (7)0.0169 (7)−0.0012 (5)0.0066 (6)0.0017 (5)
C100.0109 (7)0.0142 (6)0.0105 (6)0.0000 (5)0.0046 (5)−0.0012 (5)
C110.0119 (7)0.0130 (6)0.0119 (6)−0.0002 (5)0.0063 (5)−0.0010 (5)
C120.0099 (7)0.0137 (6)0.0116 (6)0.0004 (5)0.0050 (5)0.0001 (5)
C130.0119 (7)0.0139 (6)0.0121 (6)−0.0002 (5)0.0059 (5)−0.0016 (5)
O1W0.0168 (6)0.0282 (7)0.0184 (6)−0.0051 (5)0.0083 (5)−0.0024 (5)
N1—C51.352 (2)S1—O61.4744 (10)
N1—C11.362 (2)S1—C101.7598 (15)
N1—H1N10.91 (3)O1—C71.3464 (18)
N2—C51.329 (2)O1—H1O10.89 (2)
N2—H1N20.87 (2)O2—C131.2354 (18)
N2—H2N20.86 (3)O3—C131.3108 (17)
C1—C21.362 (2)O3—H1O30.84 (3)
C1—H1A0.98 (2)C7—C81.396 (2)
C2—C31.413 (2)C7—C121.4059 (19)
C2—H2A0.946 (19)C8—C91.378 (2)
C3—C41.372 (2)C8—H8A0.99 (2)
C3—C61.496 (2)C9—C101.399 (2)
C4—C51.408 (2)C9—H9A0.96 (2)
C4—H4A0.95 (2)C10—C111.384 (2)
C6—H6A0.94 (3)C11—C121.399 (2)
C6—H6B0.96 (3)C11—H11A1.013 (19)
C6—H6C0.98 (3)C12—C131.476 (2)
S1—O51.4498 (12)O1W—H1W10.87 (2)
S1—O41.4539 (10)O1W—H2W10.86 (3)
C5—N1—C1122.70 (14)O4—S1—O6111.41 (6)
C5—N1—H1N1117.5 (15)O5—S1—C10106.72 (7)
C1—N1—H1N1119.8 (15)O4—S1—C10106.72 (7)
C5—N2—H1N2117.3 (15)O6—S1—C10105.29 (6)
C5—N2—H2N2117.0 (17)C7—O1—H1O1107.9 (15)
H1N2—N2—H2N2126 (2)C13—O3—H1O3109.5 (17)
N1—C1—C2120.18 (15)O1—C7—C8117.20 (13)
N1—C1—H1A114.5 (13)O1—C7—C12123.15 (13)
C2—C1—H1A125.3 (13)C8—C7—C12119.64 (14)
C1—C2—C3119.59 (15)C9—C8—C7120.56 (14)
C1—C2—H2A118.8 (12)C9—C8—H8A119.9 (13)
C3—C2—H2A121.5 (12)C7—C8—H8A119.5 (13)
C4—C3—C2118.76 (15)C8—C9—C10119.87 (14)
C4—C3—C6120.69 (15)C8—C9—H9A121.1 (12)
C2—C3—C6120.55 (14)C10—C9—H9A119.0 (12)
C3—C4—C5121.00 (15)C11—C10—C9120.40 (14)
C3—C4—H4A122.9 (12)C11—C10—S1120.31 (11)
C5—C4—H4A115.9 (12)C9—C10—S1119.26 (11)
N2—C5—N1119.28 (15)C10—C11—C12120.00 (13)
N2—C5—C4122.94 (15)C10—C11—H11A122.3 (11)
N1—C5—C4117.77 (14)C12—C11—H11A117.7 (11)
C3—C6—H6A109.5 (15)C11—C12—C7119.53 (13)
C3—C6—H6B112.1 (16)C11—C12—C13120.35 (13)
H6A—C6—H6B112 (2)C7—C12—C13120.11 (13)
C3—C6—H6C110.6 (17)O2—C13—O3123.31 (13)
H6A—C6—H6C107 (2)O2—C13—C12122.56 (13)
H6B—C6—H6C105 (2)O3—C13—C12114.11 (13)
O5—S1—O4114.09 (7)H1W1—O1W—H2W1103 (2)
O5—S1—O6111.96 (6)
C5—N1—C1—C20.2 (2)O6—S1—C10—C11101.97 (12)
N1—C1—C2—C3−0.2 (2)O5—S1—C10—C943.01 (13)
C1—C2—C3—C4−0.3 (2)O4—S1—C10—C9165.36 (11)
C1—C2—C3—C6179.81 (15)O6—S1—C10—C9−76.13 (12)
C2—C3—C4—C50.8 (2)C9—C10—C11—C120.1 (2)
C6—C3—C4—C5−179.32 (14)S1—C10—C11—C12−177.97 (10)
C1—N1—C5—N2−179.53 (14)C10—C11—C12—C7−0.8 (2)
C1—N1—C5—C40.2 (2)C10—C11—C12—C13−179.91 (13)
C3—C4—C5—N2179.01 (14)O1—C7—C12—C11−178.68 (13)
C3—C4—C5—N1−0.8 (2)C8—C7—C12—C111.0 (2)
O1—C7—C8—C9179.25 (14)O1—C7—C12—C130.4 (2)
C12—C7—C8—C9−0.4 (2)C8—C7—C12—C13−179.93 (13)
C7—C8—C9—C10−0.3 (2)C11—C12—C13—O2−177.02 (13)
C8—C9—C10—C110.4 (2)C7—C12—C13—O23.9 (2)
C8—C9—C10—S1178.55 (12)C11—C12—C13—O31.81 (19)
O5—S1—C10—C11−138.89 (12)C7—C12—C13—O3−177.26 (12)
O4—S1—C10—C11−16.54 (13)
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···O4i0.87 (2)1.96 (2)2.8108 (18)168 (2)
O1W—H2W1···O20.86 (2)2.04 (2)2.8882 (18)175 (2)
O1—H1O1···O20.89 (3)1.84 (2)2.6325 (18)146 (2)
O3—H1O3···O6ii0.84 (3)1.76 (3)2.5842 (18)166 (2)
N1—H1N1···O1Wiii0.92 (3)1.96 (2)2.808 (2)153 (2)
N2—H1N2···O1Wiii0.87 (3)2.16 (3)2.923 (2)147.7 (19)
N2—H2N2···O5i0.86 (3)2.19 (3)3.030 (2)163 (3)
C2—H2A···O3iv0.94 (2)2.58 (2)3.507 (2)169.1 (17)
C4—H4A···O4i0.96 (2)2.56 (2)3.449 (2)155.4 (16)
C4—H4A···O5i0.96 (2)2.57 (2)3.370 (2)142 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W1⋯O4i0.87 (2)1.96 (2)2.8108 (18)168 (2)
O1W—H2W1⋯O20.86 (2)2.04 (2)2.8882 (18)175 (2)
O1—H1O1⋯O20.89 (3)1.84 (2)2.6325 (18)146 (2)
O3—H1O3⋯O6ii0.84 (3)1.76 (3)2.5842 (18)166 (2)
N1—H1N1⋯O1Wiii0.92 (3)1.96 (2)2.808 (2)153 (2)
N2—H1N2⋯O1Wiii0.87 (3)2.16 (3)2.923 (2)147.7 (19)
N2—H2N2⋯O5i0.86 (3)2.19 (3)3.030 (2)163 (3)
C2—H2A⋯O3iv0.94 (2)2.58 (2)3.507 (2)169.1 (17)
C4—H4A⋯O4i0.96 (2)2.56 (2)3.449 (2)155.4 (16)
C4—H4A⋯O5i0.96 (2)2.57 (2)3.370 (2)142 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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