| Literature DB >> 21588389 |
Madhukar Hemamalini1, Hoong-Kun Fun.
Abstract
In the crystal structure of the title salt, C(6)H(9)N(2) (+)·C(7)H(5)O(6)S(-)·H(2)O, the water mol-ecule acts as an acceptor of bifurcated N-H⋯O hydrogen bonds from the pyridinium H atom and one H atom of the 2-amino group, forming an R(2) (1)(6) ring. The 3-carb-oxy-4-hy-droxy-benzene-sulfonate anions self-assemble via O-H⋯O hydrogen bonds, leading to supra-molecular chains along the a axis. These chains and R(2) (1)(6) motifs are linked via O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds, forming a layer parallel to the ac plane. There is also an intra-molecular O-H⋯O hydrogen bond in the 3-carb-oxy-4-hy-droxy-benzene-sulfonate anion, generating an S(6) ring motif.Entities:
Year: 2010 PMID: 21588389 PMCID: PMC3007430 DOI: 10.1107/S1600536810028539
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H9N2+·C7H5O6S−·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3564 reflections |
| θ = 2.9–31.3° | |
| µ = 0.26 mm−1 | |
| β = 112.800 (3)° | Plate, colourless |
| 0.22 × 0.13 × 0.04 mm | |
| Bruker APEXII DUO CCD area-detector diffractometer | 5266 independent reflections |
| Radiation source: fine-focus sealed tube | 3749 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.5°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 19925 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 5266 reflections | (Δ/σ)max = 0.001 |
| 272 parameters | Δρmax = 0.48 e Å−3 |
| 0 restraints | Δρmin = −0.46 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| N1 | 0.72197 (18) | 0.06878 (6) | 0.66805 (18) | 0.0152 (3) | |
| N2 | 0.5709 (2) | 0.13358 (6) | 0.4490 (2) | 0.0198 (3) | |
| C1 | 0.7310 (2) | 0.02604 (7) | 0.7835 (2) | 0.0178 (3) | |
| C2 | 0.5828 (2) | 0.00495 (7) | 0.7925 (2) | 0.0175 (3) | |
| C3 | 0.4197 (2) | 0.02782 (6) | 0.6816 (2) | 0.0150 (3) | |
| C4 | 0.4152 (2) | 0.07114 (7) | 0.5679 (2) | 0.0151 (3) | |
| C5 | 0.5695 (2) | 0.09223 (6) | 0.5591 (2) | 0.0143 (3) | |
| C6 | 0.2550 (2) | 0.00524 (8) | 0.6887 (2) | 0.0210 (3) | |
| S1 | 1.05075 (5) | 0.122233 (15) | 1.12957 (5) | 0.01150 (9) | |
| O1 | 0.45088 (16) | 0.26192 (5) | 0.70255 (16) | 0.0191 (2) | |
| O2 | 0.25121 (14) | 0.18998 (5) | 0.77919 (15) | 0.0163 (2) | |
| O3 | 0.38003 (15) | 0.11993 (5) | 0.96906 (15) | 0.0149 (2) | |
| O4 | 0.99761 (15) | 0.08555 (5) | 1.24394 (14) | 0.0162 (2) | |
| O5 | 1.19053 (14) | 0.15990 (5) | 1.23096 (15) | 0.0169 (2) | |
| O6 | 1.08974 (14) | 0.09095 (4) | 0.99033 (14) | 0.0143 (2) | |
| C7 | 0.5829 (2) | 0.22831 (6) | 0.8014 (2) | 0.0133 (3) | |
| C8 | 0.7498 (2) | 0.24303 (7) | 0.8160 (2) | 0.0160 (3) | |
| C9 | 0.8917 (2) | 0.21104 (6) | 0.9167 (2) | 0.0146 (3) | |
| C10 | 0.86880 (19) | 0.16349 (6) | 1.00593 (19) | 0.0117 (3) | |
| C11 | 0.70415 (19) | 0.14816 (6) | 0.99271 (19) | 0.0118 (3) | |
| C12 | 0.55938 (19) | 0.18022 (6) | 0.88935 (19) | 0.0115 (3) | |
| C13 | 0.3834 (2) | 0.16422 (6) | 0.87474 (19) | 0.0123 (3) | |
| O1W | −0.05262 (17) | 0.12872 (5) | 0.54890 (17) | 0.0207 (3) | |
| H1A | 0.850 (3) | 0.0128 (9) | 0.855 (3) | 0.031 (6)* | |
| H2A | 0.592 (3) | −0.0256 (8) | 0.870 (3) | 0.020 (5)* | |
| H4A | 0.309 (3) | 0.0871 (8) | 0.485 (3) | 0.018 (5)* | |
| H6A | 0.161 (3) | 0.0148 (10) | 0.581 (3) | 0.044 (7)* | |
| H6B | 0.239 (4) | 0.0168 (10) | 0.796 (4) | 0.051 (7)* | |
| H6C | 0.259 (4) | −0.0352 (11) | 0.695 (4) | 0.054 (8)* | |
| H9A | 1.007 (3) | 0.2204 (8) | 0.925 (3) | 0.019 (5)* | |
| H8A | 0.766 (3) | 0.2767 (9) | 0.752 (3) | 0.027 (5)* | |
| H11A | 0.683 (3) | 0.1137 (8) | 1.054 (3) | 0.017 (5)* | |
| H1W1 | −0.027 (3) | 0.1193 (9) | 0.457 (3) | 0.030 (6)* | |
| H2W1 | 0.034 (3) | 0.1488 (10) | 0.614 (3) | 0.035 (6)* | |
| H1O1 | 0.353 (3) | 0.2485 (10) | 0.708 (3) | 0.038 (6)* | |
| H1O3 | 0.280 (3) | 0.1160 (10) | 0.969 (3) | 0.040 (7)* | |
| H1N1 | 0.822 (3) | 0.0824 (9) | 0.661 (3) | 0.039 (7)* | |
| H1N2 | 0.671 (3) | 0.1437 (9) | 0.450 (3) | 0.031 (6)* | |
| H2N2 | 0.471 (4) | 0.1469 (11) | 0.379 (3) | 0.047 (7)* |
| N1 | 0.0115 (6) | 0.0191 (6) | 0.0148 (6) | 0.0004 (5) | 0.0047 (5) | −0.0003 (5) |
| N2 | 0.0177 (8) | 0.0222 (7) | 0.0193 (7) | −0.0003 (6) | 0.0070 (6) | 0.0056 (5) |
| C1 | 0.0166 (8) | 0.0182 (7) | 0.0160 (7) | 0.0020 (6) | 0.0035 (6) | −0.0001 (6) |
| C2 | 0.0201 (8) | 0.0166 (7) | 0.0150 (7) | 0.0018 (6) | 0.0060 (6) | 0.0015 (5) |
| C3 | 0.0159 (8) | 0.0173 (7) | 0.0120 (6) | −0.0027 (6) | 0.0057 (6) | −0.0030 (5) |
| C4 | 0.0129 (7) | 0.0191 (7) | 0.0127 (7) | 0.0005 (6) | 0.0044 (6) | 0.0004 (5) |
| C5 | 0.0148 (7) | 0.0169 (7) | 0.0115 (6) | 0.0004 (6) | 0.0053 (5) | −0.0006 (5) |
| C6 | 0.0204 (9) | 0.0242 (9) | 0.0205 (8) | −0.0073 (7) | 0.0100 (7) | −0.0015 (6) |
| S1 | 0.00831 (17) | 0.01437 (17) | 0.01216 (16) | 0.00001 (13) | 0.00434 (12) | 0.00150 (12) |
| O1 | 0.0124 (6) | 0.0204 (6) | 0.0239 (6) | 0.0034 (4) | 0.0062 (5) | 0.0083 (4) |
| O2 | 0.0093 (5) | 0.0196 (5) | 0.0186 (5) | 0.0009 (4) | 0.0038 (4) | 0.0017 (4) |
| O3 | 0.0100 (5) | 0.0166 (5) | 0.0204 (5) | −0.0003 (4) | 0.0085 (4) | 0.0033 (4) |
| O4 | 0.0124 (5) | 0.0206 (6) | 0.0162 (5) | 0.0007 (4) | 0.0062 (4) | 0.0057 (4) |
| O5 | 0.0108 (5) | 0.0196 (5) | 0.0175 (5) | −0.0035 (4) | 0.0023 (4) | −0.0011 (4) |
| O6 | 0.0118 (5) | 0.0169 (5) | 0.0166 (5) | 0.0012 (4) | 0.0079 (4) | 0.0000 (4) |
| C7 | 0.0114 (7) | 0.0147 (7) | 0.0134 (6) | 0.0018 (5) | 0.0044 (5) | 0.0023 (5) |
| C8 | 0.0132 (7) | 0.0172 (7) | 0.0188 (7) | −0.0005 (6) | 0.0075 (6) | 0.0044 (6) |
| C9 | 0.0110 (7) | 0.0168 (7) | 0.0169 (7) | −0.0012 (5) | 0.0066 (6) | 0.0017 (5) |
| C10 | 0.0109 (7) | 0.0142 (6) | 0.0105 (6) | 0.0000 (5) | 0.0046 (5) | −0.0012 (5) |
| C11 | 0.0119 (7) | 0.0130 (6) | 0.0119 (6) | −0.0002 (5) | 0.0063 (5) | −0.0010 (5) |
| C12 | 0.0099 (7) | 0.0137 (6) | 0.0116 (6) | 0.0004 (5) | 0.0050 (5) | 0.0001 (5) |
| C13 | 0.0119 (7) | 0.0139 (6) | 0.0121 (6) | −0.0002 (5) | 0.0059 (5) | −0.0016 (5) |
| O1W | 0.0168 (6) | 0.0282 (7) | 0.0184 (6) | −0.0051 (5) | 0.0083 (5) | −0.0024 (5) |
| N1—C5 | 1.352 (2) | S1—O6 | 1.4744 (10) |
| N1—C1 | 1.362 (2) | S1—C10 | 1.7598 (15) |
| N1—H1N1 | 0.91 (3) | O1—C7 | 1.3464 (18) |
| N2—C5 | 1.329 (2) | O1—H1O1 | 0.89 (2) |
| N2—H1N2 | 0.87 (2) | O2—C13 | 1.2354 (18) |
| N2—H2N2 | 0.86 (3) | O3—C13 | 1.3108 (17) |
| C1—C2 | 1.362 (2) | O3—H1O3 | 0.84 (3) |
| C1—H1A | 0.98 (2) | C7—C8 | 1.396 (2) |
| C2—C3 | 1.413 (2) | C7—C12 | 1.4059 (19) |
| C2—H2A | 0.946 (19) | C8—C9 | 1.378 (2) |
| C3—C4 | 1.372 (2) | C8—H8A | 0.99 (2) |
| C3—C6 | 1.496 (2) | C9—C10 | 1.399 (2) |
| C4—C5 | 1.408 (2) | C9—H9A | 0.96 (2) |
| C4—H4A | 0.95 (2) | C10—C11 | 1.384 (2) |
| C6—H6A | 0.94 (3) | C11—C12 | 1.399 (2) |
| C6—H6B | 0.96 (3) | C11—H11A | 1.013 (19) |
| C6—H6C | 0.98 (3) | C12—C13 | 1.476 (2) |
| S1—O5 | 1.4498 (12) | O1W—H1W1 | 0.87 (2) |
| S1—O4 | 1.4539 (10) | O1W—H2W1 | 0.86 (3) |
| C5—N1—C1 | 122.70 (14) | O4—S1—O6 | 111.41 (6) |
| C5—N1—H1N1 | 117.5 (15) | O5—S1—C10 | 106.72 (7) |
| C1—N1—H1N1 | 119.8 (15) | O4—S1—C10 | 106.72 (7) |
| C5—N2—H1N2 | 117.3 (15) | O6—S1—C10 | 105.29 (6) |
| C5—N2—H2N2 | 117.0 (17) | C7—O1—H1O1 | 107.9 (15) |
| H1N2—N2—H2N2 | 126 (2) | C13—O3—H1O3 | 109.5 (17) |
| N1—C1—C2 | 120.18 (15) | O1—C7—C8 | 117.20 (13) |
| N1—C1—H1A | 114.5 (13) | O1—C7—C12 | 123.15 (13) |
| C2—C1—H1A | 125.3 (13) | C8—C7—C12 | 119.64 (14) |
| C1—C2—C3 | 119.59 (15) | C9—C8—C7 | 120.56 (14) |
| C1—C2—H2A | 118.8 (12) | C9—C8—H8A | 119.9 (13) |
| C3—C2—H2A | 121.5 (12) | C7—C8—H8A | 119.5 (13) |
| C4—C3—C2 | 118.76 (15) | C8—C9—C10 | 119.87 (14) |
| C4—C3—C6 | 120.69 (15) | C8—C9—H9A | 121.1 (12) |
| C2—C3—C6 | 120.55 (14) | C10—C9—H9A | 119.0 (12) |
| C3—C4—C5 | 121.00 (15) | C11—C10—C9 | 120.40 (14) |
| C3—C4—H4A | 122.9 (12) | C11—C10—S1 | 120.31 (11) |
| C5—C4—H4A | 115.9 (12) | C9—C10—S1 | 119.26 (11) |
| N2—C5—N1 | 119.28 (15) | C10—C11—C12 | 120.00 (13) |
| N2—C5—C4 | 122.94 (15) | C10—C11—H11A | 122.3 (11) |
| N1—C5—C4 | 117.77 (14) | C12—C11—H11A | 117.7 (11) |
| C3—C6—H6A | 109.5 (15) | C11—C12—C7 | 119.53 (13) |
| C3—C6—H6B | 112.1 (16) | C11—C12—C13 | 120.35 (13) |
| H6A—C6—H6B | 112 (2) | C7—C12—C13 | 120.11 (13) |
| C3—C6—H6C | 110.6 (17) | O2—C13—O3 | 123.31 (13) |
| H6A—C6—H6C | 107 (2) | O2—C13—C12 | 122.56 (13) |
| H6B—C6—H6C | 105 (2) | O3—C13—C12 | 114.11 (13) |
| O5—S1—O4 | 114.09 (7) | H1W1—O1W—H2W1 | 103 (2) |
| O5—S1—O6 | 111.96 (6) | ||
| C5—N1—C1—C2 | 0.2 (2) | O6—S1—C10—C11 | 101.97 (12) |
| N1—C1—C2—C3 | −0.2 (2) | O5—S1—C10—C9 | 43.01 (13) |
| C1—C2—C3—C4 | −0.3 (2) | O4—S1—C10—C9 | 165.36 (11) |
| C1—C2—C3—C6 | 179.81 (15) | O6—S1—C10—C9 | −76.13 (12) |
| C2—C3—C4—C5 | 0.8 (2) | C9—C10—C11—C12 | 0.1 (2) |
| C6—C3—C4—C5 | −179.32 (14) | S1—C10—C11—C12 | −177.97 (10) |
| C1—N1—C5—N2 | −179.53 (14) | C10—C11—C12—C7 | −0.8 (2) |
| C1—N1—C5—C4 | 0.2 (2) | C10—C11—C12—C13 | −179.91 (13) |
| C3—C4—C5—N2 | 179.01 (14) | O1—C7—C12—C11 | −178.68 (13) |
| C3—C4—C5—N1 | −0.8 (2) | C8—C7—C12—C11 | 1.0 (2) |
| O1—C7—C8—C9 | 179.25 (14) | O1—C7—C12—C13 | 0.4 (2) |
| C12—C7—C8—C9 | −0.4 (2) | C8—C7—C12—C13 | −179.93 (13) |
| C7—C8—C9—C10 | −0.3 (2) | C11—C12—C13—O2 | −177.02 (13) |
| C8—C9—C10—C11 | 0.4 (2) | C7—C12—C13—O2 | 3.9 (2) |
| C8—C9—C10—S1 | 178.55 (12) | C11—C12—C13—O3 | 1.81 (19) |
| O5—S1—C10—C11 | −138.89 (12) | C7—C12—C13—O3 | −177.26 (12) |
| O4—S1—C10—C11 | −16.54 (13) |
| H··· | ||||
| O1W—H1W1···O4i | 0.87 (2) | 1.96 (2) | 2.8108 (18) | 168 (2) |
| O1W—H2W1···O2 | 0.86 (2) | 2.04 (2) | 2.8882 (18) | 175 (2) |
| O1—H1O1···O2 | 0.89 (3) | 1.84 (2) | 2.6325 (18) | 146 (2) |
| O3—H1O3···O6ii | 0.84 (3) | 1.76 (3) | 2.5842 (18) | 166 (2) |
| N1—H1N1···O1Wiii | 0.92 (3) | 1.96 (2) | 2.808 (2) | 153 (2) |
| N2—H1N2···O1Wiii | 0.87 (3) | 2.16 (3) | 2.923 (2) | 147.7 (19) |
| N2—H2N2···O5i | 0.86 (3) | 2.19 (3) | 3.030 (2) | 163 (3) |
| C2—H2A···O3iv | 0.94 (2) | 2.58 (2) | 3.507 (2) | 169.1 (17) |
| C4—H4A···O4i | 0.96 (2) | 2.56 (2) | 3.449 (2) | 155.4 (16) |
| C4—H4A···O5i | 0.96 (2) | 2.57 (2) | 3.370 (2) | 142 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.87 (2) | 1.96 (2) | 2.8108 (18) | 168 (2) |
| O1 | 0.86 (2) | 2.04 (2) | 2.8882 (18) | 175 (2) |
| O1—H1 | 0.89 (3) | 1.84 (2) | 2.6325 (18) | 146 (2) |
| O3—H1 | 0.84 (3) | 1.76 (3) | 2.5842 (18) | 166 (2) |
| N1—H1 | 0.92 (3) | 1.96 (2) | 2.808 (2) | 153 (2) |
| N2—H1 | 0.87 (3) | 2.16 (3) | 2.923 (2) | 147.7 (19) |
| N2—H2 | 0.86 (3) | 2.19 (3) | 3.030 (2) | 163 (3) |
| C2—H2 | 0.94 (2) | 2.58 (2) | 3.507 (2) | 169.1 (17) |
| C4—H4 | 0.96 (2) | 2.56 (2) | 3.449 (2) | 155.4 (16) |
| C4—H4 | 0.96 (2) | 2.57 (2) | 3.370 (2) | 142 (2) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .