| Literature DB >> 21588354 |
Abstract
The title compound, C(13)H(8)Cl(2)N(2)O, was prepared by the reaction of 3,5-dichloro-2-hy-droxy-benzaldehyde with 1,2-diamino-benzene in methanol at ambient temperature. The title mol-ecule is essentially planar, the mean deviation from the plane of the non-H atoms being 0.037 (2) Å. There is an intra-molecular O-H⋯N hydrogen bond in the mol-ecule. In the crystal, symmetry-related mol-ecules are linked through N-H⋯O hydrogen bonds, forming polymeric chains propagating in [001]. The chains are linked by π-π inter-actions involving the dichloro-phenol ring and the benzoimidazole ring system [centroid-centroid distances = 3.535 (2) and 3.724 (2) Å].Entities:
Year: 2010 PMID: 21588354 PMCID: PMC3007443 DOI: 10.1107/S1600536810027844
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H8Cl2N2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1560 reflections |
| θ = 3.0–26.2° | |
| µ = 0.53 mm−1 | |
| β = 104.261 (3)° | Block, yellow |
| 0.21 × 0.20 × 0.18 mm | |
| Bruker SMART CCD area-detector diffractometer | 2562 independent reflections |
| Radiation source: fine-focus sealed tube | 1810 reflections with |
| graphite | |
| ω scans | θmax = 27.0°, θmin = 3.0° |
| Absorption correction: multi-scan ( | |
| 6117 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2562 reflections | (Δ/σ)max = 0.001 |
| 167 parameters | Δρmax = 0.26 e Å−3 |
| 1 restraint | Δρmin = −0.23 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 1.19596 (6) | 0.99614 (9) | 0.79805 (4) | 0.0505 (2) | |
| Cl2 | 1.37522 (5) | 0.87011 (11) | 0.48582 (5) | 0.0602 (3) | |
| N1 | 0.91704 (15) | 0.6598 (3) | 0.37972 (14) | 0.0350 (4) | |
| N2 | 0.85158 (15) | 0.7146 (3) | 0.51409 (13) | 0.0361 (4) | |
| O1 | 0.98220 (14) | 0.8474 (2) | 0.67436 (12) | 0.0469 (4) | |
| H1 | 0.9240 | 0.8028 | 0.6378 | 0.070* | |
| C1 | 1.05692 (18) | 0.7881 (3) | 0.52982 (15) | 0.0312 (5) | |
| C2 | 1.06961 (18) | 0.8491 (3) | 0.62790 (16) | 0.0337 (5) | |
| C3 | 1.1788 (2) | 0.9158 (3) | 0.67846 (15) | 0.0345 (5) | |
| C4 | 1.27187 (19) | 0.9217 (3) | 0.63599 (16) | 0.0389 (5) | |
| H4 | 1.3434 | 0.9663 | 0.6713 | 0.047* | |
| C5 | 1.25768 (19) | 0.8605 (3) | 0.53975 (17) | 0.0376 (5) | |
| C6 | 1.15119 (19) | 0.7967 (3) | 0.48692 (16) | 0.0360 (5) | |
| H6 | 1.1423 | 0.7590 | 0.4219 | 0.043* | |
| C7 | 0.94248 (18) | 0.7206 (3) | 0.47531 (15) | 0.0328 (5) | |
| C8 | 0.79936 (19) | 0.6132 (3) | 0.35518 (16) | 0.0352 (5) | |
| C9 | 0.75956 (18) | 0.6484 (3) | 0.44004 (17) | 0.0365 (5) | |
| C10 | 0.6424 (2) | 0.6198 (4) | 0.43936 (19) | 0.0489 (7) | |
| H10 | 0.6147 | 0.6440 | 0.4949 | 0.059* | |
| C11 | 0.5702 (2) | 0.5549 (4) | 0.3542 (2) | 0.0584 (8) | |
| H11 | 0.4922 | 0.5346 | 0.3520 | 0.070* | |
| C12 | 0.6117 (2) | 0.5182 (4) | 0.2698 (2) | 0.0596 (8) | |
| H12 | 0.5604 | 0.4730 | 0.2135 | 0.071* | |
| C13 | 0.7263 (2) | 0.5474 (3) | 0.26834 (19) | 0.0485 (6) | |
| H13 | 0.7532 | 0.5244 | 0.2123 | 0.058* | |
| H1A | 0.968 (2) | 0.649 (4) | 0.342 (2) | 0.080* |
| Cl1 | 0.0599 (5) | 0.0604 (4) | 0.0299 (3) | −0.0096 (3) | 0.0084 (3) | −0.0027 (3) |
| Cl2 | 0.0373 (4) | 0.0907 (6) | 0.0589 (4) | −0.0105 (3) | 0.0236 (3) | −0.0014 (4) |
| N1 | 0.0306 (10) | 0.0409 (11) | 0.0340 (10) | −0.0020 (8) | 0.0090 (8) | −0.0018 (8) |
| N2 | 0.0306 (10) | 0.0451 (12) | 0.0341 (10) | 0.0002 (9) | 0.0106 (8) | 0.0037 (8) |
| O1 | 0.0365 (9) | 0.0717 (13) | 0.0367 (9) | −0.0072 (8) | 0.0171 (7) | −0.0077 (8) |
| C1 | 0.0297 (11) | 0.0315 (12) | 0.0326 (11) | 0.0013 (9) | 0.0085 (9) | 0.0032 (9) |
| C2 | 0.0327 (12) | 0.0374 (13) | 0.0326 (11) | 0.0040 (9) | 0.0112 (9) | 0.0065 (9) |
| C3 | 0.0384 (13) | 0.0367 (13) | 0.0283 (11) | 0.0003 (10) | 0.0077 (9) | 0.0038 (9) |
| C4 | 0.0318 (13) | 0.0438 (14) | 0.0384 (12) | −0.0037 (10) | 0.0034 (10) | 0.0046 (10) |
| C5 | 0.0303 (12) | 0.0433 (14) | 0.0409 (13) | 0.0004 (10) | 0.0118 (10) | 0.0048 (10) |
| C6 | 0.0349 (12) | 0.0411 (14) | 0.0338 (11) | −0.0007 (10) | 0.0123 (10) | −0.0020 (10) |
| C7 | 0.0331 (12) | 0.0339 (12) | 0.0320 (11) | 0.0028 (10) | 0.0088 (9) | 0.0043 (9) |
| C8 | 0.0299 (12) | 0.0370 (13) | 0.0382 (12) | 0.0004 (9) | 0.0073 (9) | 0.0048 (10) |
| C9 | 0.0281 (12) | 0.0399 (13) | 0.0402 (12) | 0.0007 (10) | 0.0058 (10) | 0.0074 (10) |
| C10 | 0.0343 (13) | 0.0657 (18) | 0.0486 (15) | −0.0014 (12) | 0.0138 (11) | 0.0071 (12) |
| C11 | 0.0297 (13) | 0.082 (2) | 0.0626 (18) | −0.0054 (14) | 0.0087 (13) | 0.0066 (15) |
| C12 | 0.0426 (16) | 0.075 (2) | 0.0530 (16) | −0.0102 (14) | −0.0035 (13) | −0.0045 (14) |
| C13 | 0.0425 (15) | 0.0583 (17) | 0.0435 (14) | −0.0053 (13) | 0.0082 (11) | −0.0039 (12) |
| Cl1—C3 | 1.736 (2) | C4—C5 | 1.388 (3) |
| Cl2—C5 | 1.740 (2) | C4—H4 | 0.9300 |
| N1—C7 | 1.370 (3) | C5—C6 | 1.379 (3) |
| N1—C8 | 1.395 (3) | C6—H6 | 0.9300 |
| N1—H1A | 0.90 (3) | C8—C13 | 1.393 (3) |
| N2—C7 | 1.320 (3) | C8—C9 | 1.403 (3) |
| N2—C9 | 1.394 (3) | C9—C10 | 1.402 (3) |
| O1—C2 | 1.350 (2) | C10—C11 | 1.369 (4) |
| O1—H1 | 0.8200 | C10—H10 | 0.9300 |
| C1—C6 | 1.393 (3) | C11—C12 | 1.409 (4) |
| C1—C2 | 1.414 (3) | C11—H11 | 0.9300 |
| C1—C7 | 1.470 (3) | C12—C13 | 1.380 (4) |
| C2—C3 | 1.403 (3) | C12—H12 | 0.9300 |
| C3—C4 | 1.375 (3) | C13—H13 | 0.9300 |
| C7—N1—C8 | 106.74 (18) | C1—C6—H6 | 119.6 |
| C7—N1—H1A | 125 (2) | N2—C7—N1 | 112.43 (19) |
| C8—N1—H1A | 128 (2) | N2—C7—C1 | 122.80 (19) |
| C7—N2—C9 | 106.08 (18) | N1—C7—C1 | 124.77 (19) |
| C2—O1—H1 | 109.5 | C13—C8—N1 | 132.1 (2) |
| C6—C1—C2 | 119.70 (19) | C13—C8—C9 | 122.2 (2) |
| C6—C1—C7 | 121.93 (19) | N1—C8—C9 | 105.67 (19) |
| C2—C1—C7 | 118.35 (19) | N2—C9—C10 | 130.6 (2) |
| O1—C2—C3 | 118.9 (2) | N2—C9—C8 | 109.08 (19) |
| O1—C2—C1 | 123.35 (19) | C10—C9—C8 | 120.3 (2) |
| C3—C2—C1 | 117.71 (19) | C11—C10—C9 | 117.7 (2) |
| C4—C3—C2 | 122.2 (2) | C11—C10—H10 | 121.1 |
| C4—C3—Cl1 | 119.11 (17) | C9—C10—H10 | 121.1 |
| C2—C3—Cl1 | 118.67 (17) | C10—C11—C12 | 121.4 (2) |
| C3—C4—C5 | 119.1 (2) | C10—C11—H11 | 119.3 |
| C3—C4—H4 | 120.4 | C12—C11—H11 | 119.3 |
| C5—C4—H4 | 120.4 | C13—C12—C11 | 121.9 (2) |
| C6—C5—C4 | 120.4 (2) | C13—C12—H12 | 119.0 |
| C6—C5—Cl2 | 120.51 (18) | C11—C12—H12 | 119.0 |
| C4—C5—Cl2 | 119.04 (17) | C12—C13—C8 | 116.5 (2) |
| C5—C6—C1 | 120.8 (2) | C12—C13—H13 | 121.8 |
| C5—C6—H6 | 119.6 | C8—C13—H13 | 121.8 |
| H··· | ||||
| O1—H1···N2 | 0.82 | 1.85 | 2.582 (2) | 148 |
| N1—H1A···O1i | 0.90 (3) | 2.39 (2) | 3.145 (2) | 143 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯N2 | 0.82 | 1.85 | 2.582 (2) | 148 |
| N1—H1 | 0.90 (3) | 2.39 (2) | 3.145 (2) | 143 (3) |
Symmetry code: (i) .