Literature DB >> 21588354

2-(1H-Benzimidazol-2-yl)-4,6-dichloro-phenol.

Li-Lu Han1.   

Abstract

The title compound, C(13)H(8)Cl(2)N(2)O, was prepared by the reaction of 3,5-dichloro-2-hy-droxy-benzaldehyde with 1,2-diamino-benzene in methanol at ambient temperature. The title mol-ecule is essentially planar, the mean deviation from the plane of the non-H atoms being 0.037 (2) Å. There is an intra-molecular O-H⋯N hydrogen bond in the mol-ecule. In the crystal, symmetry-related mol-ecules are linked through N-H⋯O hydrogen bonds, forming polymeric chains propagating in [001]. The chains are linked by π-π inter-actions involving the dichloro-phenol ring and the benzoimidazole ring system [centroid-centroid distances = 3.535 (2) and 3.724 (2) Å].

Entities:  

Year:  2010        PMID: 21588354      PMCID: PMC3007443          DOI: 10.1107/S1600536810027844

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation and crystal structures of some Schiff bases bearing a C=N double bond, see: Jeseentharani et al. (2010 ▶); Hamaker et al. (2010 ▶); Tanaka et al. (2010 ▶); Tunç et al. (2009 ▶); Khalaji et al. (2010 ▶). For standard bond distances, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C13H8Cl2N2O M = 279.11 Monoclinic, a = 11.850 (3) Å b = 7.446 (3) Å c = 13.947 (2) Å β = 104.261 (3)° V = 1192.7 (6) Å3 Z = 4 Mo Kα radiation μ = 0.53 mm−1 T = 298 K 0.21 × 0.20 × 0.18 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.897, T max = 0.911 6117 measured reflections 2562 independent reflections 1810 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.127 S = 1.03 2562 reflections 167 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810027844/su2193sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810027844/su2193Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H8Cl2N2OF(000) = 568
Mr = 279.11Dx = 1.554 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1560 reflections
a = 11.850 (3) Åθ = 3.0–26.2°
b = 7.446 (3) ŵ = 0.53 mm1
c = 13.947 (2) ÅT = 298 K
β = 104.261 (3)°Block, yellow
V = 1192.7 (6) Å30.21 × 0.20 × 0.18 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2562 independent reflections
Radiation source: fine-focus sealed tube1810 reflections with I > 2σ(I)
graphiteRint = 0.035
ω scansθmax = 27.0°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −15→12
Tmin = 0.897, Tmax = 0.911k = −9→9
6117 measured reflectionsl = −12→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0678P)2] where P = (Fo2 + 2Fc2)/3
2562 reflections(Δ/σ)max = 0.001
167 parametersΔρmax = 0.26 e Å3
1 restraintΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.19596 (6)0.99614 (9)0.79805 (4)0.0505 (2)
Cl21.37522 (5)0.87011 (11)0.48582 (5)0.0602 (3)
N10.91704 (15)0.6598 (3)0.37972 (14)0.0350 (4)
N20.85158 (15)0.7146 (3)0.51409 (13)0.0361 (4)
O10.98220 (14)0.8474 (2)0.67436 (12)0.0469 (4)
H10.92400.80280.63780.070*
C11.05692 (18)0.7881 (3)0.52982 (15)0.0312 (5)
C21.06961 (18)0.8491 (3)0.62790 (16)0.0337 (5)
C31.1788 (2)0.9158 (3)0.67846 (15)0.0345 (5)
C41.27187 (19)0.9217 (3)0.63599 (16)0.0389 (5)
H41.34340.96630.67130.047*
C51.25768 (19)0.8605 (3)0.53975 (17)0.0376 (5)
C61.15119 (19)0.7967 (3)0.48692 (16)0.0360 (5)
H61.14230.75900.42190.043*
C70.94248 (18)0.7206 (3)0.47531 (15)0.0328 (5)
C80.79936 (19)0.6132 (3)0.35518 (16)0.0352 (5)
C90.75956 (18)0.6484 (3)0.44004 (17)0.0365 (5)
C100.6424 (2)0.6198 (4)0.43936 (19)0.0489 (7)
H100.61470.64400.49490.059*
C110.5702 (2)0.5549 (4)0.3542 (2)0.0584 (8)
H110.49220.53460.35200.070*
C120.6117 (2)0.5182 (4)0.2698 (2)0.0596 (8)
H120.56040.47300.21350.071*
C130.7263 (2)0.5474 (3)0.26834 (19)0.0485 (6)
H130.75320.52440.21230.058*
H1A0.968 (2)0.649 (4)0.342 (2)0.080*
U11U22U33U12U13U23
Cl10.0599 (5)0.0604 (4)0.0299 (3)−0.0096 (3)0.0084 (3)−0.0027 (3)
Cl20.0373 (4)0.0907 (6)0.0589 (4)−0.0105 (3)0.0236 (3)−0.0014 (4)
N10.0306 (10)0.0409 (11)0.0340 (10)−0.0020 (8)0.0090 (8)−0.0018 (8)
N20.0306 (10)0.0451 (12)0.0341 (10)0.0002 (9)0.0106 (8)0.0037 (8)
O10.0365 (9)0.0717 (13)0.0367 (9)−0.0072 (8)0.0171 (7)−0.0077 (8)
C10.0297 (11)0.0315 (12)0.0326 (11)0.0013 (9)0.0085 (9)0.0032 (9)
C20.0327 (12)0.0374 (13)0.0326 (11)0.0040 (9)0.0112 (9)0.0065 (9)
C30.0384 (13)0.0367 (13)0.0283 (11)0.0003 (10)0.0077 (9)0.0038 (9)
C40.0318 (13)0.0438 (14)0.0384 (12)−0.0037 (10)0.0034 (10)0.0046 (10)
C50.0303 (12)0.0433 (14)0.0409 (13)0.0004 (10)0.0118 (10)0.0048 (10)
C60.0349 (12)0.0411 (14)0.0338 (11)−0.0007 (10)0.0123 (10)−0.0020 (10)
C70.0331 (12)0.0339 (12)0.0320 (11)0.0028 (10)0.0088 (9)0.0043 (9)
C80.0299 (12)0.0370 (13)0.0382 (12)0.0004 (9)0.0073 (9)0.0048 (10)
C90.0281 (12)0.0399 (13)0.0402 (12)0.0007 (10)0.0058 (10)0.0074 (10)
C100.0343 (13)0.0657 (18)0.0486 (15)−0.0014 (12)0.0138 (11)0.0071 (12)
C110.0297 (13)0.082 (2)0.0626 (18)−0.0054 (14)0.0087 (13)0.0066 (15)
C120.0426 (16)0.075 (2)0.0530 (16)−0.0102 (14)−0.0035 (13)−0.0045 (14)
C130.0425 (15)0.0583 (17)0.0435 (14)−0.0053 (13)0.0082 (11)−0.0039 (12)
Cl1—C31.736 (2)C4—C51.388 (3)
Cl2—C51.740 (2)C4—H40.9300
N1—C71.370 (3)C5—C61.379 (3)
N1—C81.395 (3)C6—H60.9300
N1—H1A0.90 (3)C8—C131.393 (3)
N2—C71.320 (3)C8—C91.403 (3)
N2—C91.394 (3)C9—C101.402 (3)
O1—C21.350 (2)C10—C111.369 (4)
O1—H10.8200C10—H100.9300
C1—C61.393 (3)C11—C121.409 (4)
C1—C21.414 (3)C11—H110.9300
C1—C71.470 (3)C12—C131.380 (4)
C2—C31.403 (3)C12—H120.9300
C3—C41.375 (3)C13—H130.9300
C7—N1—C8106.74 (18)C1—C6—H6119.6
C7—N1—H1A125 (2)N2—C7—N1112.43 (19)
C8—N1—H1A128 (2)N2—C7—C1122.80 (19)
C7—N2—C9106.08 (18)N1—C7—C1124.77 (19)
C2—O1—H1109.5C13—C8—N1132.1 (2)
C6—C1—C2119.70 (19)C13—C8—C9122.2 (2)
C6—C1—C7121.93 (19)N1—C8—C9105.67 (19)
C2—C1—C7118.35 (19)N2—C9—C10130.6 (2)
O1—C2—C3118.9 (2)N2—C9—C8109.08 (19)
O1—C2—C1123.35 (19)C10—C9—C8120.3 (2)
C3—C2—C1117.71 (19)C11—C10—C9117.7 (2)
C4—C3—C2122.2 (2)C11—C10—H10121.1
C4—C3—Cl1119.11 (17)C9—C10—H10121.1
C2—C3—Cl1118.67 (17)C10—C11—C12121.4 (2)
C3—C4—C5119.1 (2)C10—C11—H11119.3
C3—C4—H4120.4C12—C11—H11119.3
C5—C4—H4120.4C13—C12—C11121.9 (2)
C6—C5—C4120.4 (2)C13—C12—H12119.0
C6—C5—Cl2120.51 (18)C11—C12—H12119.0
C4—C5—Cl2119.04 (17)C12—C13—C8116.5 (2)
C5—C6—C1120.8 (2)C12—C13—H13121.8
C5—C6—H6119.6C8—C13—H13121.8
D—H···AD—HH···AD···AD—H···A
O1—H1···N20.821.852.582 (2)148
N1—H1A···O1i0.90 (3)2.39 (2)3.145 (2)143 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N20.821.852.582 (2)148
N1—H1A⋯O1i0.90 (3)2.39 (2)3.145 (2)143 (3)

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  2-(1H-Benzimidazol-2-yl)phenol.

Authors:  S M Prakash; A Thiruvalluvar; S Rosepriya; N Srinivasan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-22
  1 in total

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