Literature DB >> 21588353

N-[(9-Ethyl-9H-carbazol-3-yl)methyl-idene]-3,4-dimethyl-isoxazol-5-amine.

Abdullah M Asiri, Salman A Khan, Kong Wai Tan, Seik Weng Ng.   

Abstract

The azomethine double bond in the title Schiff base, C(20)H(19)N(3)O, has an E configuration. The 13-membered carbazolyl fused ring system [r.m.s. deviation = 0.023 (9) Å] is nearly coplanar with the five-membered pyrazole ring [r.m.s. deviation = 0.003 (4) Å]; the dihedral angle between the two systems is 10.8 (2)°. The crystal studied was a non-merohedral twin having a 35% minor component.

Entities:  

Year:  2010        PMID: 21588353      PMCID: PMC3007468          DOI: 10.1107/S1600536810027686

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and spectroscopic characterization of the title compound, see: Asiri et al. (2010 ▶). For the treatment of non-merohedral twins, see: Spek (2009 ▶).

Experimental

Crystal data

C20H19N3O M = 317.38 Monoclinic, a = 8.0575 (9) Å b = 13.4483 (15) Å c = 14.8488 (16) Å β = 94.049 (2)° V = 1605.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.20 × 0.15 × 0.05 mm

Data collection

Bruker SMART APEX diffractometer 11993 measured reflections 2811 independent reflections 2286 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.089 wR(F 2) = 0.262 S = 1.11 2811 reflections 221 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.54 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810027686/rk2213sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810027686/rk2213Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H19N3OF(000) = 672
Mr = 317.38Dx = 1.313 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3958 reflections
a = 8.0575 (9) Åθ = 2.5–27.4°
b = 13.4483 (15) ŵ = 0.08 mm1
c = 14.8488 (16) ÅT = 100 K
β = 94.049 (2)°Prism, yellow
V = 1605.0 (3) Å30.20 × 0.15 × 0.05 mm
Z = 4
Bruker SMART APEX diffractometer2286 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.057
graphiteθmax = 25.0°, θmin = 2.1°
ω scansh = −9→8
11993 measured reflectionsk = −15→15
2811 independent reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.089Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.262H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.1086P)2 + 4.6936P] where P = (Fo2 + 2Fc2)/3
2811 reflections(Δ/σ)max = 0.001
221 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.54 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2910 (4)0.3151 (2)0.1571 (2)0.0238 (8)
N11.1980 (5)0.1389 (3)0.4076 (3)0.0219 (9)
N20.4716 (5)0.1815 (3)0.2053 (3)0.0216 (9)
N30.1279 (5)0.3252 (3)0.1158 (3)0.0253 (9)
C11.1728 (6)0.3018 (3)0.3684 (3)0.0187 (10)
C21.2291 (6)0.3999 (3)0.3616 (3)0.0215 (10)
H21.16020.44890.33200.026*
C31.3860 (6)0.4244 (3)0.3984 (3)0.0257 (11)
H31.42470.49090.39470.031*
C41.4879 (6)0.3522 (4)0.4411 (3)0.0257 (11)
H41.59470.37080.46670.031*
C51.4375 (6)0.2540 (4)0.4472 (3)0.0248 (11)
H51.50840.20490.47530.030*
C61.2794 (6)0.2302 (3)0.4105 (3)0.0185 (10)
C71.2634 (6)0.0460 (3)0.4467 (3)0.0239 (11)
H7A1.17120.00810.47100.029*
H7B1.34530.06140.49760.029*
C81.3456 (7)−0.0178 (4)0.3792 (4)0.0336 (13)
H8A1.3818−0.08050.40780.050*
H8B1.44230.01740.35830.050*
H8C1.2662−0.03150.32770.050*
C91.0436 (6)0.1505 (3)0.3641 (3)0.0175 (10)
C101.0204 (6)0.2514 (3)0.3393 (3)0.0180 (10)
C110.8678 (6)0.2813 (3)0.2978 (3)0.0193 (10)
H110.84950.34910.28210.023*
C120.7420 (6)0.2112 (3)0.2796 (3)0.0212 (10)
C130.7718 (6)0.1102 (3)0.3024 (3)0.0212 (10)
H130.68690.06270.28750.025*
C140.9185 (6)0.0784 (3)0.3453 (3)0.0228 (11)
H140.93540.01070.36160.027*
C150.5842 (6)0.2432 (3)0.2365 (3)0.0205 (10)
H150.56250.31240.23110.025*
C160.3229 (6)0.2162 (3)0.1664 (3)0.0186 (10)
C170.1911 (6)0.1619 (3)0.1324 (3)0.0207 (10)
C180.0728 (6)0.2352 (3)0.1022 (3)0.0197 (10)
C190.1746 (6)0.0520 (3)0.1276 (3)0.0253 (11)
H19A0.28020.02110.14930.038*
H19B0.14630.03200.06500.038*
H19C0.08660.03040.16550.038*
C20−0.0982 (6)0.2179 (4)0.0589 (3)0.0280 (11)
H20A−0.16650.18470.10200.042*
H20B−0.09110.17580.00540.042*
H20C−0.14880.28180.04100.042*
U11U22U33U12U13U23
O10.0252 (18)0.0164 (16)0.0296 (18)−0.0002 (14)0.0004 (14)0.0000 (13)
N10.026 (2)0.0186 (19)0.021 (2)0.0010 (17)0.0022 (17)0.0028 (15)
N20.023 (2)0.0176 (19)0.024 (2)−0.0013 (17)0.0046 (17)0.0003 (15)
N30.024 (2)0.024 (2)0.028 (2)0.0035 (18)0.0010 (18)0.0026 (17)
C10.022 (2)0.019 (2)0.015 (2)−0.0006 (19)0.0041 (18)−0.0030 (17)
C20.021 (2)0.016 (2)0.027 (2)0.0013 (19)0.002 (2)−0.0006 (18)
C30.024 (3)0.019 (2)0.034 (3)−0.003 (2)0.004 (2)−0.003 (2)
C40.021 (2)0.031 (3)0.024 (2)−0.001 (2)0.001 (2)−0.004 (2)
C50.029 (3)0.027 (2)0.019 (2)0.009 (2)0.001 (2)0.0007 (19)
C60.021 (2)0.018 (2)0.017 (2)0.0017 (19)0.0020 (18)−0.0010 (17)
C70.031 (3)0.016 (2)0.025 (2)0.003 (2)−0.002 (2)0.0036 (18)
C80.037 (3)0.027 (3)0.037 (3)0.009 (2)0.000 (2)0.002 (2)
C90.021 (2)0.016 (2)0.015 (2)0.0030 (18)0.0046 (19)0.0001 (17)
C100.024 (3)0.014 (2)0.016 (2)−0.0009 (18)0.0040 (19)−0.0010 (16)
C110.023 (3)0.017 (2)0.018 (2)0.0014 (19)0.0032 (19)−0.0007 (17)
C120.024 (3)0.021 (2)0.019 (2)−0.003 (2)0.0043 (19)−0.0026 (18)
C130.025 (3)0.017 (2)0.022 (2)−0.0061 (19)0.005 (2)−0.0020 (18)
C140.030 (3)0.013 (2)0.025 (2)−0.001 (2)0.005 (2)0.0007 (18)
C150.021 (2)0.017 (2)0.024 (2)−0.0023 (19)0.005 (2)−0.0019 (18)
C160.023 (2)0.014 (2)0.019 (2)0.0001 (18)0.0054 (19)0.0019 (17)
C170.021 (2)0.019 (2)0.022 (2)−0.0016 (19)0.0039 (19)−0.0006 (18)
C180.021 (2)0.020 (2)0.018 (2)−0.0012 (19)0.0040 (19)0.0003 (18)
C190.024 (3)0.016 (2)0.036 (3)−0.002 (2)−0.003 (2)0.0011 (19)
C200.025 (3)0.033 (3)0.026 (3)0.000 (2)0.000 (2)0.001 (2)
O1—C161.360 (5)C8—H8B0.9800
O1—N31.417 (5)C8—H8C0.9800
N1—C91.369 (6)C9—C141.412 (6)
N1—C61.391 (6)C9—C101.416 (6)
N1—C71.461 (6)C10—C111.395 (6)
N2—C151.291 (6)C11—C121.397 (6)
N2—C161.375 (6)C11—H110.9500
N3—C181.300 (6)C12—C131.416 (6)
C1—C21.400 (6)C12—C151.448 (7)
C1—C61.407 (6)C13—C141.371 (7)
C1—C101.443 (6)C13—H130.9500
C2—C31.381 (7)C14—H140.9500
C2—H20.9500C15—H150.9500
C3—C41.395 (7)C16—C171.357 (6)
C3—H30.9500C17—C181.422 (6)
C4—C51.386 (7)C17—C191.485 (6)
C4—H40.9500C18—C201.496 (7)
C5—C61.387 (7)C19—H19A0.9800
C5—H50.9500C19—H19B0.9800
C7—C81.507 (7)C19—H19C0.9800
C7—H7A0.9900C20—H20A0.9800
C7—H7B0.9900C20—H20B0.9800
C8—H8A0.9800C20—H20C0.9800
C16—O1—N3107.5 (3)C11—C10—C9119.2 (4)
C9—N1—C6109.0 (4)C11—C10—C1134.6 (4)
C9—N1—C7125.1 (4)C9—C10—C1106.2 (4)
C6—N1—C7125.9 (4)C10—C11—C12119.7 (4)
C15—N2—C16120.1 (4)C10—C11—H11120.1
C18—N3—O1105.9 (4)C12—C11—H11120.1
C2—C1—C6119.1 (4)C11—C12—C13119.5 (4)
C2—C1—C10134.0 (4)C11—C12—C15119.2 (4)
C6—C1—C10107.0 (4)C13—C12—C15121.3 (4)
C3—C2—C1119.2 (4)C14—C13—C12122.4 (4)
C3—C2—H2120.4C14—C13—H13118.8
C1—C2—H2120.4C12—C13—H13118.8
C2—C3—C4120.4 (4)C13—C14—C9117.3 (4)
C2—C3—H3119.8C13—C14—H14121.4
C4—C3—H3119.8C9—C14—H14121.4
C5—C4—C3121.8 (5)N2—C15—C12122.7 (4)
C5—C4—H4119.1N2—C15—H15118.6
C3—C4—H4119.1C12—C15—H15118.6
C4—C5—C6117.3 (4)C17—C16—O1110.6 (4)
C4—C5—H5121.3C17—C16—N2127.6 (4)
C6—C5—H5121.3O1—C16—N2121.9 (4)
C5—C6—N1129.3 (4)C16—C17—C18103.5 (4)
C5—C6—C1122.1 (4)C16—C17—C19128.2 (4)
N1—C6—C1108.6 (4)C18—C17—C19128.3 (4)
N1—C7—C8112.7 (4)N3—C18—C17112.5 (4)
N1—C7—H7A109.1N3—C18—C20120.4 (4)
C8—C7—H7A109.1C17—C18—C20127.2 (4)
N1—C7—H7B109.1C17—C19—H19A109.5
C8—C7—H7B109.1C17—C19—H19B109.5
H7A—C7—H7B107.8H19A—C19—H19B109.5
C7—C8—H8A109.5C17—C19—H19C109.5
C7—C8—H8B109.5H19A—C19—H19C109.5
H8A—C8—H8B109.5H19B—C19—H19C109.5
C7—C8—H8C109.5C18—C20—H20A109.5
H8A—C8—H8C109.5C18—C20—H20B109.5
H8B—C8—H8C109.5H20A—C20—H20B109.5
N1—C9—C14128.9 (4)C18—C20—H20C109.5
N1—C9—C10109.3 (4)H20A—C20—H20C109.5
C14—C9—C10121.8 (4)H20B—C20—H20C109.5
C16—O1—N3—C18−0.6 (5)C2—C1—C10—C9178.0 (5)
C6—C1—C2—C3−1.7 (6)C6—C1—C10—C9−1.0 (5)
C10—C1—C2—C3179.5 (5)C9—C10—C11—C12−1.5 (6)
C1—C2—C3—C40.6 (7)C1—C10—C11—C12−179.1 (5)
C2—C3—C4—C50.9 (7)C10—C11—C12—C13−0.8 (6)
C3—C4—C5—C6−1.2 (7)C10—C11—C12—C15180.0 (4)
C4—C5—C6—N1−179.6 (4)C11—C12—C13—C142.5 (7)
C4—C5—C6—C10.1 (7)C15—C12—C13—C14−178.3 (4)
C9—N1—C6—C5−179.6 (4)C12—C13—C14—C9−1.8 (7)
C7—N1—C6—C52.0 (7)N1—C9—C14—C13178.3 (4)
C9—N1—C6—C10.6 (5)C10—C9—C14—C13−0.6 (6)
C7—N1—C6—C1−177.8 (4)C16—N2—C15—C12178.9 (4)
C2—C1—C6—C51.3 (6)C11—C12—C15—N2169.3 (4)
C10—C1—C6—C5−179.6 (4)C13—C12—C15—N2−9.9 (7)
C2—C1—C6—N1−178.9 (4)N3—O1—C16—C170.9 (5)
C10—C1—C6—N10.2 (5)N3—O1—C16—N2−179.4 (4)
C9—N1—C7—C886.7 (6)C15—N2—C16—C17−178.4 (4)
C6—N1—C7—C8−95.2 (5)C15—N2—C16—O12.0 (6)
C6—N1—C9—C14179.8 (4)O1—C16—C17—C18−0.9 (5)
C7—N1—C9—C14−1.9 (7)N2—C16—C17—C18179.5 (4)
C6—N1—C9—C10−1.2 (5)O1—C16—C17—C19178.9 (4)
C7—N1—C9—C10177.1 (4)N2—C16—C17—C19−0.7 (8)
N1—C9—C10—C11−176.9 (4)O1—N3—C18—C170.1 (5)
C14—C9—C10—C112.2 (6)O1—N3—C18—C20−179.9 (4)
N1—C9—C10—C11.4 (5)C16—C17—C18—N30.5 (5)
C14—C9—C10—C1−179.6 (4)C19—C17—C18—N3−179.3 (5)
C2—C1—C10—C11−4.2 (9)C16—C17—C18—C20−179.5 (4)
C6—C1—C10—C11176.8 (5)C19—C17—C18—C200.7 (8)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  2 in total
  1 in total

1.  3,4-Dimethyl-N-[(E)-3-nitro-benzyl-idene]-1,2-oxazol-5-amine.

Authors:  Abdullah M Asiri; Salman A Khan; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-11
  1 in total

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