Literature DB >> 21588344

tert-Butyl 3-(8-bromo-4H,10H-1,2-oxazolo[4,3-c][1]benzoxepin-10-yl)-2-methyl-1H-indole-1-carboxyl-ate.

Ankur Trigunait, P Malathy, K Ramachandiran, P T Perumal, K Gunasekaran.   

Abstract

In the title compound, C(25)H(23)BrN(2)O(4), the seven-membered ring adopts a twisted-boat conformation. The indole ring system is planar within 0.021 (2) Å and the ester group [-C(=O)-O-C-] is almost coplanar with it [dihedral angle = 3.0 (2)°]. The conformation of the ester group is influenced by intra-molecular C-H⋯O inter-actions. In the crystal structure, mol-ecules are linked into chains along the b axis by C-H⋯N hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588344      PMCID: PMC3007347          DOI: 10.1107/S1600536810027297

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and biological applications of nitro­gen- and oxygen-containing heterocyclic compounds, see: Furstner (2003 ▶); Liddell (2002 ▶); Caramella & Grunanger (1984 ▶); Stormer et al. (2004 ▶); Erdelyi et al. (2008 ▶). Hou et al. (2003 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For asymmetry parameters, see: Nardelli (1983 ▶).

Experimental

Crystal data

C25H23BrN2O4 M = 495.36 Monoclinic, a = 16.0494 (6) Å b = 9.6497 (4) Å c = 16.2202 (7) Å β = 116.267 (2)° V = 2252.66 (16) Å3 Z = 4 Mo Kα radiation μ = 1.86 mm−1 T = 293 K 0.20 × 0.20 × 0.20 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.982, T max = 0.982 20668 measured reflections 5584 independent reflections 2780 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.134 S = 1.00 5584 reflections 289 parameters 1 restraint H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.48 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810027297/ci5101sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810027297/ci5101Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H23BrN2O4F(000) = 1016
Mr = 495.36Dx = 1.461 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1964 reflections
a = 16.0494 (6) Åθ = 1.4–28.4°
b = 9.6497 (4) ŵ = 1.86 mm1
c = 16.2202 (7) ÅT = 293 K
β = 116.267 (2)°Block, colourless
V = 2252.66 (16) Å30.20 × 0.20 × 0.20 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer5584 independent reflections
Radiation source: fine-focus sealed tube2780 reflections with I > 2σ(I)
graphiteRint = 0.049
ω and φ scansθmax = 28.4°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −21→21
Tmin = 0.982, Tmax = 0.982k = −12→12
20668 measured reflectionsl = −21→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0504P)2 + 1.2404P] where P = (Fo2 + 2Fc2)/3
5584 reflections(Δ/σ)max = 0.002
289 parametersΔρmax = 0.40 e Å3
1 restraintΔρmin = −0.47 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.21016 (4)0.94661 (4)0.20807 (3)0.0911 (2)
O10.48628 (16)0.2154 (2)0.14770 (17)0.0662 (7)
O20.43563 (16)0.6581 (2)0.04692 (15)0.0590 (6)
O3−0.01565 (17)0.2636 (3)0.02194 (17)0.0791 (8)
O40.02421 (14)0.2088 (2)0.16886 (14)0.0513 (5)
N10.40074 (18)0.2682 (3)0.1374 (2)0.0543 (7)
N20.12827 (16)0.3153 (2)0.13481 (16)0.0389 (6)
C10.2807 (2)0.8543 (3)0.1577 (2)0.0550 (8)
C20.2779 (2)0.7113 (3)0.1518 (2)0.0476 (8)
H20.24060.66200.17190.057*
C30.3299 (2)0.6404 (3)0.1163 (2)0.0424 (7)
C40.3153 (2)0.4858 (3)0.0952 (2)0.0429 (7)
H40.28280.47930.02800.051*
C50.4033 (2)0.4004 (3)0.1233 (2)0.0425 (7)
C60.5349 (2)0.3220 (4)0.1381 (2)0.0584 (9)
H60.59400.31390.14110.070*
C70.4885 (2)0.4401 (3)0.1237 (2)0.0462 (8)
C80.5156 (2)0.5831 (4)0.1103 (3)0.0598 (9)
H8A0.54320.63120.16890.072*
H8B0.56150.57840.08680.072*
C90.3850 (2)0.7190 (3)0.0876 (2)0.0468 (7)
C100.3868 (2)0.8620 (4)0.0935 (2)0.0605 (9)
H100.42410.91220.07360.073*
C110.3343 (3)0.9314 (3)0.1283 (3)0.0635 (10)
H110.33511.02760.13180.076*
C140.1088 (2)0.3832 (4)−0.0252 (2)0.0559 (9)
H14A0.04880.3422−0.04300.084*
H14B0.14070.3343−0.05430.084*
H14C0.10140.4786−0.04390.084*
C120.2510 (2)0.4182 (3)0.1294 (2)0.0404 (7)
C130.1637 (2)0.3746 (3)0.0763 (2)0.0404 (7)
C150.19718 (19)0.3240 (3)0.2260 (2)0.0376 (7)
C160.1986 (2)0.2815 (3)0.3088 (2)0.0451 (7)
H160.14810.23600.31030.054*
C170.2775 (2)0.3094 (4)0.3884 (2)0.0537 (8)
H170.28010.28200.44440.064*
C180.3536 (2)0.3776 (4)0.3872 (2)0.0534 (8)
H180.40570.39610.44220.064*
C190.3518 (2)0.4174 (3)0.3050 (2)0.0507 (8)
H190.40270.46230.30420.061*
C200.27401 (19)0.3904 (3)0.2236 (2)0.0393 (7)
C210.0393 (2)0.2605 (3)0.1012 (2)0.0476 (8)
C22−0.0658 (2)0.1391 (4)0.1484 (2)0.0542 (9)
C23−0.0521 (3)0.0973 (5)0.2429 (3)0.0806 (13)
H23A−0.00230.03140.26820.121*
H23B−0.10820.05620.23890.121*
H23C−0.03710.17770.28170.121*
C24−0.0771 (3)0.0154 (4)0.0874 (3)0.0829 (12)
H24A−0.0255−0.04640.11730.124*
H24B−0.07930.04590.03020.124*
H24C−0.1338−0.03200.07590.124*
C25−0.1444 (2)0.2408 (5)0.1069 (3)0.0769 (12)
H25A−0.15270.26620.04660.115*
H25B−0.13040.32200.14490.115*
H25C−0.20050.19910.10280.115*
U11U22U33U12U13U23
Br10.1213 (4)0.0499 (3)0.1235 (4)0.0187 (2)0.0738 (3)−0.0069 (2)
O10.0673 (15)0.0465 (15)0.0968 (19)0.0139 (12)0.0474 (14)0.0101 (13)
O20.0687 (15)0.0561 (15)0.0683 (15)−0.0004 (12)0.0448 (13)0.0146 (12)
O30.0632 (16)0.114 (2)0.0528 (16)−0.0311 (15)0.0189 (13)0.0067 (15)
O40.0489 (12)0.0553 (14)0.0505 (12)−0.0162 (11)0.0227 (10)0.0038 (10)
N10.0567 (16)0.0364 (16)0.082 (2)0.0024 (13)0.0422 (15)0.0006 (14)
N20.0426 (13)0.0335 (14)0.0452 (14)−0.0037 (11)0.0237 (12)0.0003 (11)
C10.062 (2)0.0330 (19)0.066 (2)0.0045 (16)0.0249 (18)0.0017 (16)
C20.0547 (18)0.0345 (18)0.0562 (19)−0.0033 (15)0.0268 (16)0.0012 (14)
C30.0484 (17)0.0322 (17)0.0484 (18)−0.0027 (14)0.0231 (15)0.0042 (13)
C40.0460 (17)0.0392 (18)0.0475 (17)−0.0070 (14)0.0244 (15)−0.0019 (14)
C50.0497 (18)0.0348 (17)0.0489 (18)−0.0037 (14)0.0272 (15)−0.0040 (14)
C60.0510 (19)0.060 (2)0.071 (2)0.0018 (18)0.0331 (18)0.0040 (18)
C70.0451 (17)0.050 (2)0.0492 (18)−0.0044 (16)0.0255 (15)0.0002 (15)
C80.052 (2)0.056 (2)0.083 (2)−0.0058 (17)0.0392 (19)0.0059 (19)
C90.0470 (17)0.0425 (19)0.0505 (18)−0.0052 (15)0.0212 (15)0.0082 (15)
C100.062 (2)0.043 (2)0.077 (2)−0.0082 (18)0.0308 (19)0.0171 (18)
C110.067 (2)0.0293 (19)0.084 (3)−0.0055 (18)0.024 (2)0.0081 (17)
C140.063 (2)0.059 (2)0.051 (2)−0.0106 (18)0.0301 (17)0.0022 (17)
C120.0488 (18)0.0288 (16)0.0482 (18)0.0001 (13)0.0257 (15)0.0000 (13)
C130.0494 (17)0.0288 (16)0.0494 (18)−0.0029 (14)0.0279 (15)0.0000 (13)
C150.0414 (16)0.0247 (15)0.0534 (19)0.0016 (13)0.0271 (15)0.0002 (13)
C160.0476 (18)0.0396 (18)0.0522 (19)0.0040 (14)0.0259 (16)0.0007 (15)
C170.061 (2)0.053 (2)0.052 (2)0.0126 (18)0.0289 (18)0.0041 (16)
C180.0466 (18)0.053 (2)0.0486 (19)0.0052 (16)0.0106 (15)−0.0094 (16)
C190.0513 (19)0.048 (2)0.052 (2)0.0023 (16)0.0223 (17)−0.0009 (15)
C200.0404 (16)0.0293 (15)0.0478 (18)0.0009 (13)0.0191 (14)−0.0047 (13)
C210.0484 (19)0.045 (2)0.049 (2)−0.0041 (15)0.0211 (17)−0.0001 (15)
C220.0475 (19)0.054 (2)0.060 (2)−0.0169 (17)0.0229 (16)0.0019 (17)
C230.072 (2)0.095 (3)0.072 (2)−0.031 (2)0.030 (2)0.018 (2)
C240.090 (3)0.061 (3)0.105 (3)−0.032 (2)0.050 (3)−0.020 (2)
C250.053 (2)0.090 (3)0.087 (3)−0.004 (2)0.031 (2)0.005 (2)
Br1—C11.887 (3)C11—H110.93
O1—C61.342 (4)C14—C131.487 (4)
O1—N11.403 (3)C14—H14A0.96
O2—C91.384 (4)C14—H14B0.96
O2—C81.436 (4)C14—H14C0.96
O3—C211.195 (4)C12—C131.347 (4)
O4—C211.321 (4)C12—C201.429 (4)
O4—C221.492 (3)C15—C161.396 (4)
N1—C51.300 (4)C15—C201.405 (4)
N2—C211.388 (4)C16—C171.376 (4)
N2—C151.403 (4)C16—H160.93
N2—C131.425 (3)C17—C181.396 (5)
C1—C111.372 (5)C17—H170.93
C1—C21.382 (4)C18—C191.376 (4)
C2—C31.386 (4)C18—H180.93
C2—H20.93C19—C201.383 (4)
C3—C91.392 (4)C19—H190.93
C3—C41.525 (4)C22—C251.502 (5)
C4—C121.518 (4)C22—C231.503 (5)
C4—C51.520 (4)C22—C241.509 (5)
C4—H40.98C23—H23A0.96
C5—C71.417 (4)C23—H23B0.96
C6—C71.325 (5)C23—H23C0.96
C6—H60.93C24—H24A0.96
C7—C81.491 (4)C24—H24B0.96
C8—H8A0.97C24—H24C0.96
C8—H8B0.97C25—H25A0.96
C9—C101.383 (5)C25—H25B0.96
C10—C111.378 (5)C25—H25C0.96
C10—H100.93
C6—O1—N1107.3 (2)C13—C12—C20109.2 (2)
C9—O2—C8113.6 (2)C13—C12—C4125.7 (3)
C21—O4—C22120.0 (2)C20—C12—C4125.1 (3)
C5—N1—O1105.8 (2)C12—C13—N2108.0 (2)
C21—N2—C15129.1 (2)C12—C13—C14129.0 (3)
C21—N2—C13122.4 (2)N2—C13—C14123.0 (3)
C15—N2—C13108.5 (2)C16—C15—N2131.8 (3)
C11—C1—C2121.5 (3)C16—C15—C20121.4 (3)
C11—C1—Br1118.9 (3)N2—C15—C20106.9 (2)
C2—C1—Br1119.6 (3)C17—C16—C15117.4 (3)
C1—C2—C3121.0 (3)C17—C16—H16121.3
C1—C2—H2119.5C15—C16—H16121.3
C3—C2—H2119.5C16—C17—C18121.9 (3)
C2—C3—C9117.2 (3)C16—C17—H17119.1
C2—C3—C4121.0 (3)C18—C17—H17119.1
C9—C3—C4121.0 (3)C19—C18—C17120.1 (3)
C12—C4—C5110.4 (2)C19—C18—H18119.9
C12—C4—C3113.6 (2)C17—C18—H18119.9
C5—C4—C3115.6 (2)C18—C19—C20119.7 (3)
C12—C4—H4105.4C18—C19—H19120.1
C5—C4—H4105.4C20—C19—H19120.1
C3—C4—H4105.4C19—C20—C15119.5 (3)
N1—C5—C7111.7 (3)C19—C20—C12133.0 (3)
N1—C5—C4119.2 (3)C15—C20—C12107.5 (2)
C7—C5—C4128.4 (3)O3—C21—O4125.7 (3)
C7—C6—O1111.7 (3)O3—C21—N2123.6 (3)
C7—C6—H6124.2O4—C21—N2110.6 (3)
O1—C6—H6124.2O4—C22—C25110.1 (3)
C6—C7—C5103.6 (3)O4—C22—C23101.8 (3)
C6—C7—C8130.1 (3)C25—C22—C23110.3 (3)
C5—C7—C8126.3 (3)O4—C22—C24109.1 (3)
O2—C8—C7110.2 (3)C25—C22—C24112.9 (3)
O2—C8—H8A109.6C23—C22—C24112.1 (3)
C7—C8—H8A109.6C22—C23—H23A109.5
O2—C8—H8B109.6C22—C23—H23B109.5
C7—C8—H8B109.6H23A—C23—H23B109.5
H8A—C8—H8B108.1C22—C23—H23C109.5
C10—C9—O2117.2 (3)H23A—C23—H23C109.5
C10—C9—C3121.2 (3)H23B—C23—H23C109.5
O2—C9—C3121.5 (3)C22—C24—H24A109.5
C11—C10—C9121.0 (3)C22—C24—H24B109.5
C11—C10—H10119.5H24A—C24—H24B109.5
C9—C10—H10119.5C22—C24—H24C109.5
C1—C11—C10118.1 (3)H24A—C24—H24C109.5
C1—C11—H11121.0H24B—C24—H24C109.5
C10—C11—H11121.0C22—C25—H25A109.5
C13—C14—H14A109.5C22—C25—H25B109.5
C13—C14—H14B109.5H25A—C25—H25B109.5
H14A—C14—H14B109.5C22—C25—H25C109.5
C13—C14—H14C109.5H25A—C25—H25C109.5
H14A—C14—H14C109.5H25B—C25—H25C109.5
H14B—C14—H14C109.5
C6—O1—N1—C5−0.5 (3)C5—C4—C12—C2059.5 (4)
C11—C1—C2—C30.4 (5)C3—C4—C12—C20−72.3 (4)
Br1—C1—C2—C3−179.1 (2)C20—C12—C13—N2−0.9 (3)
C1—C2—C3—C90.4 (5)C4—C12—C13—N2179.0 (3)
C1—C2—C3—C4−169.9 (3)C20—C12—C13—C14178.9 (3)
C2—C3—C4—C12−8.4 (4)C4—C12—C13—C14−1.3 (5)
C9—C3—C4—C12−178.3 (3)C21—N2—C13—C12179.9 (3)
C2—C3—C4—C5−137.6 (3)C15—N2—C13—C120.0 (3)
C9—C3—C4—C552.5 (4)C21—N2—C13—C140.1 (4)
O1—N1—C5—C70.0 (3)C15—N2—C13—C14−179.8 (3)
O1—N1—C5—C4171.0 (2)C21—N2—C15—C160.4 (5)
C12—C4—C5—N126.0 (4)C13—N2—C15—C16−179.7 (3)
C3—C4—C5—N1156.7 (3)C21—N2—C15—C20−179.0 (3)
C12—C4—C5—C7−164.6 (3)C13—N2—C15—C200.9 (3)
C3—C4—C5—C7−33.9 (4)N2—C15—C16—C17−178.1 (3)
N1—O1—C6—C71.0 (4)C20—C15—C16—C171.2 (4)
O1—C6—C7—C5−0.9 (4)C15—C16—C17—C180.0 (5)
O1—C6—C7—C8179.3 (3)C16—C17—C18—C19−0.9 (5)
N1—C5—C7—C60.6 (4)C17—C18—C19—C200.4 (5)
C4—C5—C7—C6−169.4 (3)C18—C19—C20—C150.8 (4)
N1—C5—C7—C8−179.7 (3)C18—C19—C20—C12179.8 (3)
C4—C5—C7—C810.3 (5)C16—C15—C20—C19−1.7 (4)
C9—O2—C8—C784.3 (3)N2—C15—C20—C19177.8 (3)
C6—C7—C8—O2145.6 (3)C16—C15—C20—C12179.1 (3)
C5—C7—C8—O2−34.0 (4)N2—C15—C20—C12−1.4 (3)
C8—O2—C9—C10110.5 (3)C13—C12—C20—C19−177.6 (3)
C8—O2—C9—C3−73.3 (4)C4—C12—C20—C192.6 (5)
C2—C3—C9—C10−0.7 (5)C13—C12—C20—C151.4 (3)
C4—C3—C9—C10169.6 (3)C4—C12—C20—C15−178.4 (3)
C2—C3—C9—O2−176.7 (3)C22—O4—C21—O34.0 (5)
C4—C3—C9—O2−6.3 (4)C22—O4—C21—N2−177.5 (2)
O2—C9—C10—C11176.4 (3)C15—N2—C21—O3176.7 (3)
C3—C9—C10—C110.2 (5)C13—N2—C21—O3−3.2 (5)
C2—C1—C11—C10−0.8 (5)C15—N2—C21—O4−1.8 (4)
Br1—C1—C11—C10178.7 (3)C13—N2—C21—O4178.3 (2)
C9—C10—C11—C10.5 (5)C21—O4—C22—C25−63.4 (4)
C5—C4—C12—C13−120.3 (3)C21—O4—C22—C23179.7 (3)
C3—C4—C12—C13107.9 (3)C21—O4—C22—C2461.1 (4)
D—H···AD—HH···AD···AD—H···A
C14—H14A···O30.961.932.694 (4)135
C24—H24B···O30.962.372.961 (5)120
C11—H11···N1i0.932.533.404 (4)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H14A⋯O30.961.932.694 (4)135
C24—H24B⋯O30.962.372.961 (5)120
C11—H11⋯N1i0.932.533.404 (4)156

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Chemical and biological investigation of N-hydroxy-valdecoxib: An active metabolite of valdecoxib.

Authors:  Péter Erdélyi; Tamás Fodor; Agnes Kis Varga; Mátyás Czugler; Anikó Gere; János Fischer
Journal:  Bioorg Med Chem       Date:  2008-03-04       Impact factor: 3.641

Review 3.  Pyrrolizidine alkaloids.

Authors:  James R Liddell
Journal:  Nat Prod Rep       Date:  2002-12       Impact factor: 13.423

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  cis-6-Bromo-4-(1-methyl-1H-indol-3-yl)-10,10a-dihydro-1H,4H-2,9-dioxa-3-aza-benz[f]azulene.

Authors:  P Narayanan; K Sethusankar; K Ramachandiran; P T Perumal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-29
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.