Literature DB >> 21588286

Diethyl 2-[(3,5-dimethyl-1H-pyrazol-1-yl)(4-meth-oxy-phen-yl)meth-yl]propane-dioate.

Ihssan Meskini, Maria Daoudi, Jean-Claude Daran, Abdelali Kerbal, Hafid Zouihri.   

Abstract

The title compound, C(20)H(26)N(2)O(5), was prepared in good yield (76%) through condensation of diethyl (4-meth-oxy-benz-yl)propane-dioate with 3,5-dimethyl-1H-pyrazole. The dihedral between the benzene and pyrazole rings is 83.96 (10)°. The crystal packing is stabilized by a C-H⋯O inter-action, which links the mol-ecules into centrosymmetric dimers.

Entities:  

Year:  2010        PMID: 21588286      PMCID: PMC3007575          DOI: 10.1107/S1600536810025572

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds displaying biological activity, see: Dayam et al. (2007 ▶); Patil et al. (2007 ▶); Ramkumar et al. (2008 ▶); Sechi et al. (2009 ▶) & Zeng et al. (2008 ▶). For the synthetic procedure, see: Pommier & Neamati (2006 ▶).

Experimental

Crystal data

C20H26N2O5 M = 374.43 Monoclinic, a = 11.9618 (3) Å b = 7.9681 (2) Å c = 21.1269 (6) Å β = 96.504 (1)° V = 2000.70 (9) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.23 × 0.17 × 0.14 mm

Data collection

Bruker X8 APEXII CCD area-detector diffractometer 18616 measured reflections 3921 independent reflections 3177 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.154 S = 1.05 3921 reflections 249 parameters H-atom parameters constrained Δρmax = 0.68 e Å−3 Δρmin = −0.45 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810025572/bt5280sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025572/bt5280Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report Enhanced figure: interactive version of Fig. 3
C20H26N2O5F(000) = 800
Mr = 374.43Dx = 1.243 Mg m3
Monoclinic, P21/cMelting point: 361 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 11.9618 (3) ÅCell parameters from 2174 reflections
b = 7.9681 (2) Åθ = 2.3–27.1°
c = 21.1269 (6) ŵ = 0.09 mm1
β = 96.504 (1)°T = 296 K
V = 2000.70 (9) Å3Block, colourless
Z = 40.23 × 0.17 × 0.14 mm
Bruker X8 APEXII CCD area-detector diffractometer3177 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.027
graphiteθmax = 26.0°, θmin = 2.7°
φ and ω scansh = −14→14
18616 measured reflectionsk = −9→9
3921 independent reflectionsl = −26→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0687P)2 + 1.8319P] where P = (Fo2 + 2Fc2)/3
3921 reflections(Δ/σ)max = 0.007
249 parametersΔρmax = 0.68 e Å3
0 restraintsΔρmin = −0.45 e Å3
Experimental. The data collection nominally covered a sphere of reciprocal space, by a combination of tree sets of exposures; each set had a different φ angle for the crystal and each exposure covered 0.5° in ω and 20 s in time. The crystal-to-detector distance was 37.5 mm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.40914 (11)−0.14261 (19)0.44322 (7)0.0301 (3)
O30.26937 (12)−0.19794 (18)0.36564 (7)0.0321 (4)
O40.39768 (14)0.2442 (2)0.36381 (8)0.0441 (4)
O50.23951 (15)0.1580 (2)0.30637 (7)0.0446 (4)
O10.16987 (15)−0.2065 (2)0.68944 (8)0.0468 (5)
N10.25069 (14)0.3219 (2)0.47437 (8)0.0252 (4)
N20.15274 (14)0.3525 (2)0.43620 (8)0.0297 (4)
C10.29918 (16)0.1528 (2)0.47752 (9)0.0230 (4)
H10.38130.16330.48450.028*
C20.26772 (16)0.0673 (3)0.41296 (9)0.0244 (4)
H20.18590.05410.40510.029*
C110.26097 (16)0.0542 (2)0.53261 (9)0.0229 (4)
C30.32439 (16)−0.1032 (2)0.41081 (9)0.0239 (4)
C120.33950 (17)−0.0251 (3)0.57616 (9)0.0277 (4)
H120.4154−0.01970.57060.033*
C210.28468 (17)0.4563 (3)0.51094 (10)0.0285 (5)
C160.14790 (16)0.0419 (3)0.54174 (10)0.0277 (4)
H160.09410.09290.51270.033*
C130.30680 (18)−0.1116 (3)0.62736 (10)0.0323 (5)
H130.3605−0.16430.65590.039*
C140.19347 (18)−0.1206 (3)0.63658 (10)0.0311 (5)
C150.11364 (17)−0.0445 (3)0.59307 (10)0.0312 (5)
H150.0376−0.05150.59830.037*
C60.30985 (19)0.1697 (3)0.35912 (10)0.0308 (5)
C230.12710 (18)0.5105 (3)0.44907 (11)0.0322 (5)
C40.32363 (19)−0.3556 (3)0.35159 (12)0.0370 (5)
H4A0.2679−0.43290.33140.044*
H4B0.3575−0.40630.39090.044*
C220.20634 (18)0.5797 (3)0.49546 (10)0.0330 (5)
H220.20600.68740.51240.040*
C50.4121 (2)−0.3243 (4)0.30837 (11)0.0466 (6)
H5A0.3789−0.26930.27040.070*
H5B0.4442−0.42920.29730.070*
H5C0.4699−0.25420.32960.070*
C250.3888 (2)0.4563 (3)0.55689 (12)0.0416 (6)
H25A0.37430.40000.59530.062*
H25B0.41140.56990.56660.062*
H25C0.44780.39900.53840.062*
C70.2781 (3)0.2351 (4)0.24975 (12)0.0612 (8)
H7A0.26950.35600.25150.073*
H7B0.35710.20980.24810.073*
C240.0258 (2)0.5924 (3)0.41410 (14)0.0489 (7)
H24A0.04930.67220.38420.073*
H24B−0.01600.64900.44390.073*
H24C−0.02090.50860.39170.073*
C170.0566 (2)−0.2040 (4)0.70479 (13)0.0545 (7)
H17A0.0335−0.09000.71010.082*
H17B0.0521−0.26490.74360.082*
H17C0.0081−0.25540.67090.082*
C80.2127 (3)0.1700 (5)0.19471 (13)0.0731 (10)
H8A0.22450.05110.19220.110*
H8B0.23510.22300.15730.110*
H8C0.13450.19190.19750.110*
U11U22U33U12U13U23
O20.0249 (7)0.0292 (8)0.0357 (8)0.0049 (6)0.0007 (6)−0.0048 (6)
O30.0317 (8)0.0265 (8)0.0371 (8)0.0009 (6)−0.0005 (6)−0.0089 (6)
O40.0466 (10)0.0436 (10)0.0435 (9)−0.0125 (8)0.0117 (8)0.0046 (8)
O50.0624 (11)0.0441 (10)0.0264 (8)−0.0085 (8)0.0010 (7)0.0036 (7)
O10.0475 (10)0.0586 (12)0.0360 (9)−0.0031 (9)0.0117 (7)0.0143 (8)
N10.0258 (8)0.0229 (9)0.0265 (8)0.0027 (7)0.0013 (7)−0.0005 (7)
N20.0280 (9)0.0278 (9)0.0330 (9)0.0061 (7)0.0015 (7)0.0008 (7)
C10.0216 (9)0.0196 (9)0.0277 (10)0.0025 (7)0.0022 (7)−0.0011 (8)
C20.0221 (9)0.0238 (10)0.0273 (10)0.0019 (8)0.0031 (8)−0.0012 (8)
C110.0242 (9)0.0203 (10)0.0246 (9)0.0011 (8)0.0036 (7)−0.0037 (7)
C30.0230 (10)0.0237 (10)0.0257 (9)−0.0028 (8)0.0067 (8)−0.0018 (8)
C120.0228 (10)0.0311 (11)0.0287 (10)0.0005 (8)0.0009 (8)−0.0014 (8)
C210.0320 (11)0.0253 (11)0.0294 (10)−0.0012 (8)0.0088 (8)−0.0025 (8)
C160.0242 (10)0.0293 (11)0.0292 (10)0.0060 (8)0.0014 (8)−0.0008 (8)
C130.0315 (11)0.0372 (13)0.0268 (10)0.0019 (9)−0.0022 (8)0.0033 (9)
C140.0379 (12)0.0310 (12)0.0253 (10)−0.0017 (9)0.0073 (9)0.0011 (8)
C150.0255 (10)0.0350 (12)0.0340 (11)0.0006 (9)0.0078 (8)−0.0019 (9)
C60.0405 (12)0.0244 (11)0.0277 (10)0.0041 (9)0.0041 (9)−0.0028 (8)
C230.0340 (11)0.0253 (11)0.0385 (11)0.0075 (9)0.0100 (9)0.0030 (9)
C40.0369 (12)0.0279 (11)0.0454 (13)0.0010 (9)0.0015 (10)−0.0159 (10)
C220.0401 (12)0.0222 (10)0.0384 (12)0.0037 (9)0.0122 (10)−0.0033 (9)
C50.0504 (15)0.0548 (16)0.0350 (12)0.0052 (12)0.0069 (11)−0.0127 (12)
C250.0425 (13)0.0381 (13)0.0423 (13)−0.0001 (11)−0.0034 (10)−0.0091 (11)
C70.097 (2)0.0572 (18)0.0293 (13)−0.0235 (17)0.0078 (14)0.0054 (12)
C240.0432 (14)0.0413 (15)0.0613 (16)0.0180 (11)0.0019 (12)0.0046 (13)
C170.0596 (17)0.0595 (18)0.0492 (15)−0.0086 (14)0.0274 (13)0.0059 (13)
C80.113 (3)0.072 (2)0.0346 (14)−0.033 (2)0.0104 (16)−0.0004 (14)
O2—C31.199 (2)C13—H130.9300
O3—C31.331 (2)C14—C151.388 (3)
O3—C41.460 (3)C15—H150.9300
O4—C61.201 (3)C23—C221.397 (3)
O5—C61.322 (3)C23—C241.496 (3)
O5—C71.465 (3)C4—C51.495 (3)
O1—C141.367 (3)C4—H4A0.9700
O1—C171.428 (3)C4—H4B0.9700
N1—C211.355 (3)C22—H220.9300
N1—N21.367 (2)C5—H5A0.9600
N1—C11.466 (2)C5—H5B0.9600
N2—C231.331 (3)C5—H5C0.9600
C1—C111.517 (3)C25—H25A0.9600
C1—C21.533 (3)C25—H25B0.9600
C1—H10.9800C25—H25C0.9600
C2—C31.521 (3)C7—C81.424 (4)
C2—C61.531 (3)C7—H7A0.9700
C2—H20.9800C7—H7B0.9700
C11—C121.390 (3)C24—H24A0.9600
C11—C161.391 (3)C24—H24B0.9600
C12—C131.376 (3)C24—H24C0.9600
C12—H120.9300C17—H17A0.9600
C21—C221.372 (3)C17—H17B0.9600
C21—C251.490 (3)C17—H17C0.9600
C16—C151.385 (3)C8—H8A0.9600
C16—H160.9300C8—H8B0.9600
C13—C141.393 (3)C8—H8C0.9600
C3—O3—C4116.03 (16)N2—C23—C24120.3 (2)
C6—O5—C7115.4 (2)C22—C23—C24128.4 (2)
C14—O1—C17117.87 (19)O3—C4—C5110.0 (2)
C21—N1—N2112.18 (17)O3—C4—H4A109.7
C21—N1—C1127.50 (16)C5—C4—H4A109.7
N2—N1—C1119.92 (16)O3—C4—H4B109.7
C23—N2—N1104.46 (17)C5—C4—H4B109.7
N1—C1—C11111.05 (15)H4A—C4—H4B108.2
N1—C1—C2108.18 (15)C21—C22—C23105.97 (19)
C11—C1—C2112.80 (16)C21—C22—H22127.0
N1—C1—H1108.2C23—C22—H22127.0
C11—C1—H1108.2C4—C5—H5A109.5
C2—C1—H1108.2C4—C5—H5B109.5
C3—C2—C6105.57 (15)H5A—C5—H5B109.5
C3—C2—C1110.98 (16)C4—C5—H5C109.5
C6—C2—C1110.86 (16)H5A—C5—H5C109.5
C3—C2—H2109.8H5B—C5—H5C109.5
C6—C2—H2109.8C21—C25—H25A109.5
C1—C2—H2109.8C21—C25—H25B109.5
C12—C11—C16118.10 (18)H25A—C25—H25B109.5
C12—C11—C1120.23 (17)C21—C25—H25C109.5
C16—C11—C1121.66 (17)H25A—C25—H25C109.5
O2—C3—O3125.32 (19)H25B—C25—H25C109.5
O2—C3—C2124.59 (18)C8—C7—O5108.6 (2)
O3—C3—C2110.01 (16)C8—C7—H7A110.0
C13—C12—C11121.13 (19)O5—C7—H7A110.0
C13—C12—H12119.4C8—C7—H7B110.0
C11—C12—H12119.4O5—C7—H7B110.0
N1—C21—C22106.12 (18)H7A—C7—H7B108.3
N1—C21—C25123.09 (19)C23—C24—H24A109.5
C22—C21—C25130.8 (2)C23—C24—H24B109.5
C15—C16—C11121.46 (19)H24A—C24—H24B109.5
C15—C16—H16119.3C23—C24—H24C109.5
C11—C16—H16119.3H24A—C24—H24C109.5
C12—C13—C14120.21 (19)H24B—C24—H24C109.5
C12—C13—H13119.9O1—C17—H17A109.5
C14—C13—H13119.9O1—C17—H17B109.5
O1—C14—C15124.7 (2)H17A—C17—H17B109.5
O1—C14—C13115.74 (19)O1—C17—H17C109.5
C15—C14—C13119.52 (19)H17A—C17—H17C109.5
C16—C15—C14119.56 (19)H17B—C17—H17C109.5
C16—C15—H15120.2C7—C8—H8A109.5
C14—C15—H15120.2C7—C8—H8B109.5
O4—C6—O5124.9 (2)H8A—C8—H8B109.5
O4—C6—C2124.10 (19)C7—C8—H8C109.5
O5—C6—C2110.92 (18)H8A—C8—H8C109.5
N2—C23—C22111.27 (19)H8B—C8—H8C109.5
D—H···AD—HH···AD···AD—H···A
C12—H12···O2i0.932.513.358 (3)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C12—H12⋯O2i0.932.513.358 (3)152

Symmetry code: (i) .

  8 in total

1.  Mining the NCI antiviral compounds for HIV-1 integrase inhibitors.

Authors:  Jinxia Deng; James A Kelley; Joseph J Barchi; Tino Sanchez; Raveendra Dayam; Yves Pommier; Nouri Neamati
Journal:  Bioorg Med Chem       Date:  2006-02-07       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Design, synthesis, molecular modeling, and anti-HIV-1 integrase activity of a series of photoactivatable diketo acid-containing inhibitors as affinity probes.

Authors:  Mario Sechi; Fabrizio Carta; Luciano Sannia; Roberto Dallocchio; Alessandro Dessì; Rasha I Al-Safi; Nouri Neamati
Journal:  Antiviral Res       Date:  2009-01-09       Impact factor: 5.970

4.  Discovery of 3-acetyl-4-hydroxy-2-pyranone derivatives and their difluoridoborate complexes as a novel class of HIV-1 integrase inhibitors.

Authors:  Kavya Ramkumar; Konstantin V Tambov; Rambabu Gundla; Alexander V Manaev; Alexandr V Manaev; Vladimir Yarovenko; Valery F Traven; Nouri Neamati
Journal:  Bioorg Med Chem       Date:  2008-08-30       Impact factor: 3.641

5.  Synthesis and biological evaluation of novel 5(H)-phenanthridin-6-ones, 5(H)-phenanthridin-6-one diketo acid, and polycyclic aromatic diketo acid analogs as new HIV-1 integrase inhibitors.

Authors:  Shivaputra Patil; Shantaram Kamath; Tino Sanchez; Nouri Neamati; Raymond F Schinazi; John K Buolamwini
Journal:  Bioorg Med Chem       Date:  2006-11-16       Impact factor: 3.641

6.  Efficient synthesis and utilization of phenyl-substituted heteroaromatic carboxylic acids as aryl diketo acid isosteres in the design of novel HIV-1 integrase inhibitors.

Authors:  Li-Fan Zeng; Hu-Shan Zhang; Yun-Hua Wang; Tino Sanchez; Yong-Tang Zheng; Nouri Neamati; Ya-Qiu Long
Journal:  Bioorg Med Chem Lett       Date:  2008-07-15       Impact factor: 2.823

7.  Substituted 2-pyrrolinone inhibitors of HIV-1 integrase.

Authors:  Raveendra Dayam; Laith Q Al-Mawsawi; Nouri Neamati
Journal:  Bioorg Med Chem Lett       Date:  2007-09-20       Impact factor: 2.823

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.