Literature DB >> 21588278

2-[1-(tert-But-oxy-carbonyl)-pyrrolidin-2-yl]-4,4,5,5-tetra-methyl-4,5-dihydro-1H-imidazole-1-oxyl 3-oxide.

Ru Jiang1, Hai-Bo Wang, Peng Gao, Lin-Lin Jing, Xiao-Li Sun.   

Abstract

In the title compound, C(16)H(28)N(3)O(4), the plane of the pyrrolidine ring system is twisted with respect to the plane of the nitronyl nitroxide unit, making a dihedral angle of 79.80 (6)°. The crystal structure is stabilized by C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588278      PMCID: PMC3007227          DOI: 10.1107/S1600536810020672

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of the title compound, see: Ullman et al. (1974 ▶). For the properties of nitronyl nitroxide radicals, see: Iqbal et al. (2009 ▶); Qin et al. (2009 ▶); Tanaka et al. (2007 ▶); Soule et al. (2007 ▶). For puckering parameters, see: Cremer & Pople (1975).

Experimental

Crystal data

C16H28N3O4 M = 326.41 Monoclinic, a = 6.1016 (12) Å b = 10.392 (2) Å c = 14.488 (3) Å β = 101.312 (3)° V = 900.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.36 × 0.28 × 0.17 mm

Data collection

Bruker SMART CCD area-detector diffractometer 4494 measured reflections 1686 independent reflections 1347 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.104 S = 0.97 1686 reflections 215 parameters 1 restraint H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek,2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810020672/dn2566sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810020672/dn2566Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H28N3O4F(000) = 354
Mr = 326.41Dx = 1.203 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1546 reflections
a = 6.1016 (12) Åθ = 2.4–21.6°
b = 10.392 (2) ŵ = 0.09 mm1
c = 14.488 (3) ÅT = 296 K
β = 101.312 (3)°Block, red
V = 900.8 (3) Å30.36 × 0.28 × 0.17 mm
Z = 2
Bruker SMART CCD area-detector diffractometer1347 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.048
graphiteθmax = 25.1°, θmin = 2.4°
phi and ω scansh = −7→7
4494 measured reflectionsk = −6→12
1686 independent reflectionsl = −16→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.104w = 1/[σ2(Fo2) + (0.0673P)2] where P = (Fo2 + 2Fc2)/3
S = 0.97(Δ/σ)max < 0.001
1686 reflectionsΔρmax = 0.18 e Å3
215 parametersΔρmin = −0.19 e Å3
1 restraintExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.022 (5)
Experimental. The absolute structure cannot be determined beacuse there are no atoms heaver than silicon in the molecular.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.0929 (4)0.3494 (3)0.78508 (14)0.0442 (6)
N20.3330 (4)0.4804 (2)0.86782 (15)0.0434 (6)
N30.1712 (4)0.6757 (2)0.71424 (15)0.0471 (6)
O10.3991 (4)0.7310 (3)0.61493 (15)0.0669 (7)
O2−0.0793 (3)0.3080 (2)0.72759 (14)0.0615 (6)
O30.4286 (4)0.5857 (2)0.90224 (15)0.0621 (6)
O40.2361 (4)0.5320 (2)0.61039 (13)0.0575 (6)
C10.2011 (6)0.3558 (4)0.5093 (2)0.0656 (9)
H1A0.25620.30440.56400.098*
H1B0.24080.31600.45500.098*
H1C0.04140.36250.50040.098*
C20.5524 (6)0.4831 (4)0.5354 (3)0.0718 (10)
H2A0.61150.56890.54340.108*
H2B0.59340.44480.48090.108*
H2C0.61230.43270.59000.108*
C30.1978 (7)0.5764 (4)0.4421 (2)0.0799 (12)
H3A0.03870.57820.43750.120*
H3B0.23160.54500.38420.120*
H3C0.25690.66170.45410.120*
C40.3028 (5)0.4878 (3)0.52248 (18)0.0488 (8)
C50.2803 (5)0.6526 (3)0.64280 (19)0.0482 (7)
C60.1631 (6)0.8032 (3)0.7549 (2)0.0556 (8)
H6A0.17050.86990.70880.067*
H6B0.28420.81530.80860.067*
C7−0.0620 (7)0.8035 (3)0.7848 (3)0.0690 (10)
H9A−0.06230.86300.83640.083*
H9B−0.18100.82690.73270.083*
C8−0.0877 (6)0.6663 (3)0.8153 (2)0.0576 (9)
H10A−0.24430.64370.80840.069*
H10B−0.01500.65420.88060.069*
C90.0256 (4)0.5839 (3)0.74985 (18)0.0417 (7)
H11−0.08780.55180.69740.050*
C100.1523 (4)0.4731 (3)0.79995 (17)0.0385 (6)
C110.2665 (5)0.2596 (3)0.8383 (2)0.0506 (8)
C120.4042 (6)0.2131 (4)0.7676 (2)0.0705 (11)
H15A0.30880.16830.71720.106*
H15B0.51940.15600.79830.106*
H15C0.47090.28560.74270.106*
C130.1549 (6)0.1467 (4)0.8763 (3)0.0692 (10)
H16A0.05990.17750.91700.104*
H16B0.26690.09090.91100.104*
H16C0.06700.09990.82490.104*
C140.3947 (4)0.3532 (3)0.91403 (18)0.0450 (7)
C150.6454 (5)0.3379 (4)0.9356 (2)0.0635 (9)
H18A0.70200.34640.87860.095*
H18B0.68330.25440.96250.095*
H18C0.71050.40310.97950.095*
C160.3053 (5)0.3565 (4)1.00551 (19)0.0596 (9)
H17A0.14570.36580.99110.089*
H17B0.37020.42791.04320.089*
H17C0.34390.27781.03960.089*
U11U22U33U12U13U23
N10.0490 (13)0.0398 (15)0.0440 (12)−0.0025 (12)0.0091 (10)0.0019 (11)
N20.0451 (13)0.0403 (15)0.0455 (12)−0.0073 (13)0.0104 (10)0.0000 (12)
N30.0717 (15)0.0350 (13)0.0405 (11)−0.0039 (13)0.0252 (11)−0.0009 (11)
O10.0936 (17)0.0510 (14)0.0679 (13)−0.0193 (14)0.0449 (12)−0.0023 (12)
O20.0602 (12)0.0519 (15)0.0653 (12)−0.0125 (11)−0.0050 (10)−0.0020 (11)
O30.0670 (13)0.0529 (15)0.0627 (12)−0.0176 (13)0.0034 (10)−0.0058 (12)
O40.0907 (15)0.0449 (13)0.0470 (11)−0.0064 (13)0.0380 (10)−0.0074 (10)
C10.087 (2)0.058 (2)0.0559 (17)−0.002 (2)0.0249 (15)−0.0131 (17)
C20.072 (2)0.069 (3)0.078 (2)0.002 (2)0.0212 (16)−0.020 (2)
C30.113 (3)0.077 (3)0.0487 (17)0.017 (2)0.0119 (17)0.0065 (19)
C40.0631 (17)0.052 (2)0.0350 (13)0.0042 (16)0.0191 (11)−0.0044 (14)
C50.0683 (19)0.0390 (18)0.0405 (13)−0.0040 (16)0.0183 (13)−0.0013 (14)
C60.085 (2)0.0382 (17)0.0477 (15)−0.0046 (18)0.0227 (15)−0.0050 (14)
C70.102 (3)0.048 (2)0.0658 (19)0.009 (2)0.0381 (18)0.0000 (17)
C80.072 (2)0.051 (2)0.0579 (17)0.0066 (18)0.0331 (15)0.0045 (16)
C90.0506 (15)0.0379 (16)0.0382 (12)−0.0024 (14)0.0123 (11)0.0002 (13)
C100.0457 (14)0.0363 (16)0.0358 (12)−0.0047 (14)0.0141 (11)0.0014 (13)
C110.0507 (17)0.043 (2)0.0583 (17)0.0013 (15)0.0113 (13)0.0030 (14)
C120.073 (2)0.069 (3)0.072 (2)0.013 (2)0.0214 (17)−0.014 (2)
C130.077 (2)0.045 (2)0.084 (2)−0.0033 (19)0.0152 (18)0.0179 (19)
C140.0482 (15)0.0446 (18)0.0428 (14)0.0008 (15)0.0104 (11)0.0058 (14)
C150.0514 (16)0.071 (3)0.0672 (18)0.0057 (18)0.0081 (14)0.0002 (19)
C160.0642 (17)0.071 (2)0.0466 (15)0.0057 (19)0.0187 (13)0.0097 (17)
N1—O21.281 (3)C6—H6B0.9700
N1—C101.341 (4)C7—C81.511 (5)
N1—C111.506 (4)C7—H9A0.9700
N2—O31.293 (3)C7—H9B0.9700
N2—C101.328 (3)C8—C91.538 (4)
N2—C141.495 (4)C8—H10A0.9700
N3—C51.357 (4)C8—H10B0.9700
N3—C61.455 (4)C9—C101.494 (4)
N3—C91.464 (4)C9—H110.9800
O1—C51.211 (4)C11—C131.513 (5)
O4—C51.347 (4)C11—C121.526 (4)
O4—C41.484 (3)C11—C141.557 (4)
C1—C41.502 (5)C12—H15A0.9600
C1—H1A0.9600C12—H15B0.9600
C1—H1B0.9600C12—H15C0.9600
C1—H1C0.9600C13—H16A0.9600
C2—C41.499 (5)C13—H16B0.9600
C2—H2A0.9600C13—H16C0.9600
C2—H2B0.9600C14—C151.509 (4)
C2—H2C0.9600C14—C161.529 (4)
C3—C41.523 (4)C15—H18A0.9600
C3—H3A0.9600C15—H18B0.9600
C3—H3B0.9600C15—H18C0.9600
C3—H3C0.9600C16—H17A0.9600
C6—C71.518 (5)C16—H17B0.9600
C6—H6A0.9700C16—H17C0.9600
O2—N1—C10126.0 (2)C7—C8—H10A110.7
O2—N1—C11122.0 (3)C9—C8—H10A110.7
C10—N1—C11111.8 (2)C7—C8—H10B110.7
O3—N2—C10125.4 (2)C9—C8—H10B110.7
O3—N2—C14121.35 (19)H10A—C8—H10B108.8
C10—N2—C14112.4 (2)N3—C9—C10112.4 (2)
C5—N3—C6122.0 (3)N3—C9—C8103.4 (2)
C5—N3—C9125.2 (2)C10—C9—C8112.4 (2)
C6—N3—C9112.3 (2)N3—C9—H11109.5
C5—O4—C4121.2 (2)C10—C9—H11109.5
C4—C1—H1A109.5C8—C9—H11109.5
C4—C1—H1B109.5N2—C10—N1109.4 (2)
H1A—C1—H1B109.5N2—C10—C9126.2 (3)
C4—C1—H1C109.5N1—C10—C9124.3 (2)
H1A—C1—H1C109.5N1—C11—C13110.2 (2)
H1B—C1—H1C109.5N1—C11—C12106.1 (2)
C4—C2—H2A109.5C13—C11—C12110.2 (3)
C4—C2—H2B109.5N1—C11—C14100.3 (2)
H2A—C2—H2B109.5C13—C11—C14115.4 (3)
C4—C2—H2C109.5C12—C11—C14113.9 (2)
H2A—C2—H2C109.5C11—C12—H15A109.5
H2B—C2—H2C109.5C11—C12—H15B109.5
C4—C3—H3A109.5H15A—C12—H15B109.5
C4—C3—H3B109.5C11—C12—H15C109.5
H3A—C3—H3B109.5H15A—C12—H15C109.5
C4—C3—H3C109.5H15B—C12—H15C109.5
H3A—C3—H3C109.5C11—C13—H16A109.5
H3B—C3—H3C109.5C11—C13—H16B109.5
O4—C4—C2110.3 (2)H16A—C13—H16B109.5
O4—C4—C1102.5 (2)C11—C13—H16C109.5
C2—C4—C1111.7 (3)H16A—C13—H16C109.5
O4—C4—C3108.9 (3)H16B—C13—H16C109.5
C2—C4—C3112.3 (3)N2—C14—C15110.0 (3)
C1—C4—C3110.7 (3)N2—C14—C16105.5 (3)
O1—C5—O4127.0 (3)C15—C14—C16110.0 (2)
O1—C5—N3123.4 (3)N2—C14—C11100.9 (2)
O4—C5—N3109.6 (3)C15—C14—C11115.4 (3)
N3—C6—C7102.8 (3)C16—C14—C11114.1 (2)
N3—C6—H6A111.2C14—C15—H18A109.5
C7—C6—H6A111.2C14—C15—H18B109.5
N3—C6—H6B111.2H18A—C15—H18B109.5
C7—C6—H6B111.2C14—C15—H18C109.5
H6A—C6—H6B109.1H18A—C15—H18C109.5
C8—C7—C6103.5 (3)H18B—C15—H18C109.5
C8—C7—H9A111.1C14—C16—H17A109.5
C6—C7—H9A111.1C14—C16—H17B109.5
C8—C7—H9B111.1H17A—C16—H17B109.5
C6—C7—H9B111.1C14—C16—H17C109.5
H9A—C7—H9B109.0H17A—C16—H17C109.5
C7—C8—C9105.0 (2)H17B—C16—H17C109.5
C5—O4—C4—C266.4 (4)C11—N1—C10—C9173.9 (2)
C5—O4—C4—C1−174.5 (3)N3—C9—C10—N250.4 (3)
C5—O4—C4—C3−57.3 (4)C8—C9—C10—N2−65.8 (4)
C4—O4—C5—O1−10.5 (5)N3—C9—C10—N1−132.5 (3)
C4—O4—C5—N3169.9 (2)C8—C9—C10—N1111.3 (3)
C6—N3—C5—O18.7 (5)O2—N1—C11—C13−43.4 (4)
C9—N3—C5—O1179.8 (3)C10—N1—C11—C13141.6 (3)
C6—N3—C5—O4−171.7 (3)O2—N1—C11—C1275.8 (3)
C9—N3—C5—O4−0.7 (4)C10—N1—C11—C12−99.2 (3)
C5—N3—C6—C7148.7 (3)O2—N1—C11—C14−165.5 (2)
C9—N3—C6—C7−23.4 (3)C10—N1—C11—C1419.5 (3)
N3—C6—C7—C834.8 (3)O3—N2—C14—C15−48.6 (3)
C6—C7—C8—C9−34.1 (3)C10—N2—C14—C15141.3 (2)
C5—N3—C9—C1069.1 (3)O3—N2—C14—C1670.0 (3)
C6—N3—C9—C10−119.1 (3)C10—N2—C14—C16−100.1 (3)
C5—N3—C9—C8−169.4 (3)O3—N2—C14—C11−171.0 (2)
C6—N3—C9—C82.4 (3)C10—N2—C14—C1119.0 (3)
C7—C8—C9—N319.9 (3)N1—C11—C14—N2−21.2 (2)
C7—C8—C9—C10141.4 (3)C13—C11—C14—N2−139.5 (3)
O3—N2—C10—N1−177.0 (2)C12—C11—C14—N291.6 (3)
C14—N2—C10—N1−7.4 (3)N1—C11—C14—C15−139.7 (3)
O3—N2—C10—C90.5 (4)C13—C11—C14—C15102.0 (3)
C14—N2—C10—C9170.0 (2)C12—C11—C14—C15−26.8 (4)
O2—N1—C10—N2176.7 (2)N1—C11—C14—C1691.4 (3)
C11—N1—C10—N2−8.6 (3)C13—C11—C14—C16−26.9 (4)
O2—N1—C10—C9−0.8 (4)C12—C11—C14—C16−155.7 (3)
D—H···AD—HH···AD···AD—H···A
C2—H2A···O10.962.473.043 (5)118
C3—H3C···O10.962.433.025 (4)120
C9—H11···O20.982.572.942 (4)102
C16—H17C···O3i0.962.483.390 (4)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯O10.962.473.043 (5)118
C3—H3C⋯O10.962.433.025 (4)120
C16—H17C⋯O3i0.962.483.390 (4)157

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  The chemistry and biology of nitroxide compounds.

Authors:  Benjamin P Soule; Fuminori Hyodo; Ken-Ichiro Matsumoto; Nicole L Simone; John A Cook; Murali C Krishna; James B Mitchell
Journal:  Free Radic Biol Med       Date:  2007-03-12       Impact factor: 7.376

3.  Very strongly ferromagnetically coupled diradicals from mixed radical centers: nitronyl nitroxide coupled to oxoverdazyl via polyene spacers.

Authors:  Iqbal A Latif; Anirban Panda; Sambhu N Datta
Journal:  J Phys Chem A       Date:  2009-02-02       Impact factor: 2.781

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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