Literature DB >> 21588243

5-(3,4,5-Trimeth-oxy-phen-yl)-1,3,4-oxadiazole-2(3H)-thione.

Aamer Saeed, Muhammad Akram, Abdul Rauf, Michael Bolte.   

Abstract

The two rings in the title compound, C(11)H(12)N(2)O(4)S, are roughly coplanar [dihedral angle = 6.77 (8)°]. Whereas the two outer methyl groups of the three meth-oxy groups are almost coplanar with the aromatic ring to which they are attached [C-C-O-C torsion angles = 8.5 (3) and -8.3 (3)°], the methyl group of the central meth-oxy substituent is not [C-C-C-C = -78.4 (3)°]. The crystal packing is stabilized by N-H⋯O hydrogen bonding.

Entities:  

Year:  2010        PMID: 21588243      PMCID: PMC3007562          DOI: 10.1107/S1600536810024967

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the use of 1,3,4-oxadiazo­les, see: Erden et al. (2005 ▶); Smicius et al. (2002 ▶); Dutta & Kataky (1992 ▶). For details of the biological activity of 1,3,4-oxadiazo­les, see: Chen, et al. (2000 ▶); Mehuskiene, et al. (2003 ▶); El-Emam et al. (2004 ▶); Krasovshii et al. (2000 ▶).

Experimental

Crystal data

C11H12N2O4S M = 268.29 Monoclinic, a = 12.506 (2) Å b = 7.1577 (7) Å c = 13.451 (2) Å β = 96.558 (12)° V = 1196.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 173 K 0.37 × 0.33 × 0.32 mm

Data collection

Stoe IPDS II two-circle diffractometer Absorption correction: multi-scan (MULABS; Spek, 2009 ▶; Blessing, 1995 ▶) T min = 0.904, T max = 0.916 7121 measured reflections 2235 independent reflections 1679 reflections with I > 2σ(I) R int = 0.075

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.112 S = 0.94 2235 reflections 171 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.45 e Å−3 Δρmin = −0.27 e Å−3 Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810024967/tk2682sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024967/tk2682Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12N2O4SF(000) = 560
Mr = 268.29Dx = 1.490 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5950 reflections
a = 12.506 (2) Åθ = 3.6–25.9°
b = 7.1577 (7) ŵ = 0.28 mm1
c = 13.451 (2) ÅT = 173 K
β = 96.558 (12)°Block, colourless
V = 1196.2 (3) Å30.37 × 0.33 × 0.32 mm
Z = 4
Stoe IPDS II two-circle diffractometer2235 independent reflections
Radiation source: fine-focus sealed tube1679 reflections with I > 2σ(I)
graphiteRint = 0.075
ω scansθmax = 25.7°, θmin = 3.5°
Absorption correction: multi-scan (MULABS; Spek, 2009; Blessing, 1995)h = −12→15
Tmin = 0.904, Tmax = 0.916k = −7→8
7121 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.112w = 1/[σ2(Fo2) + (0.0699P)2] where P = (Fo2 + 2Fc2)/3
S = 0.94(Δ/σ)max < 0.001
2235 reflectionsΔρmax = 0.45 e Å3
171 parametersΔρmin = −0.27 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.024 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.40007 (5)0.10396 (10)0.11859 (4)0.0358 (2)
O10.40507 (12)0.1537 (2)0.31509 (9)0.0258 (4)
C10.45909 (18)0.1504 (3)0.23147 (14)0.0260 (5)
N10.56078 (16)0.1912 (3)0.26552 (13)0.0278 (4)
H10.619 (2)0.211 (4)0.233 (2)0.040 (7)*
N20.57512 (15)0.2258 (3)0.36818 (12)0.0273 (4)
C20.48040 (17)0.2018 (3)0.39406 (14)0.0234 (5)
C110.44138 (17)0.2288 (3)0.49170 (14)0.0232 (5)
C120.33315 (17)0.2074 (3)0.49941 (14)0.0248 (5)
H120.28540.17020.44280.030*
C130.29410 (17)0.2409 (3)0.59106 (14)0.0234 (5)
C140.36466 (18)0.3006 (3)0.67290 (14)0.0238 (5)
C150.47369 (17)0.3228 (3)0.66338 (14)0.0239 (5)
C160.51427 (18)0.2840 (3)0.57291 (14)0.0246 (5)
H160.58900.29480.56690.030*
O170.18925 (12)0.2223 (2)0.60687 (10)0.0289 (4)
O180.32183 (13)0.3468 (2)0.75958 (10)0.0288 (4)
O190.53524 (12)0.3899 (2)0.74645 (10)0.0307 (4)
C170.11725 (18)0.1399 (4)0.52800 (16)0.0336 (6)
H17A0.10790.22520.47070.050*
H17B0.04730.11690.55200.050*
H17C0.14740.02150.50750.050*
C180.34058 (19)0.2114 (4)0.83861 (15)0.0328 (6)
H18A0.31030.09070.81530.049*
H18B0.30610.25310.89660.049*
H18C0.41820.19800.85780.049*
C190.64872 (18)0.3968 (4)0.74341 (16)0.0335 (6)
H19A0.67680.26960.73930.050*
H19B0.68300.45750.80420.050*
H19C0.66440.46820.68460.050*
U11U22U33U12U13U23
S10.0358 (4)0.0522 (4)0.0195 (3)−0.0034 (3)0.0042 (2)−0.0050 (2)
O10.0240 (8)0.0374 (10)0.0168 (7)−0.0006 (7)0.0050 (5)−0.0010 (6)
C10.0267 (12)0.0313 (13)0.0212 (10)0.0023 (10)0.0076 (8)0.0022 (8)
N10.0250 (10)0.0401 (12)0.0196 (8)0.0001 (9)0.0086 (7)−0.0011 (8)
N20.0262 (10)0.0376 (12)0.0186 (8)0.0003 (8)0.0050 (7)0.0000 (7)
C20.0231 (11)0.0263 (12)0.0208 (9)0.0004 (9)0.0018 (8)0.0015 (8)
C110.0273 (11)0.0243 (12)0.0186 (9)0.0029 (9)0.0051 (8)0.0017 (8)
C120.0249 (11)0.0317 (13)0.0179 (9)−0.0018 (10)0.0021 (8)−0.0004 (8)
C130.0218 (11)0.0284 (12)0.0203 (10)0.0009 (9)0.0037 (8)0.0013 (8)
C140.0281 (12)0.0278 (12)0.0161 (9)0.0046 (9)0.0046 (8)−0.0004 (8)
C150.0252 (11)0.0265 (11)0.0190 (9)0.0027 (9)−0.0012 (8)0.0010 (8)
C160.0213 (11)0.0289 (13)0.0239 (10)0.0018 (9)0.0038 (8)0.0021 (8)
O170.0209 (8)0.0453 (10)0.0212 (7)−0.0042 (7)0.0053 (6)−0.0041 (6)
O180.0321 (9)0.0370 (10)0.0183 (7)0.0087 (7)0.0064 (6)−0.0004 (6)
O190.0245 (8)0.0438 (10)0.0228 (7)0.0001 (7)−0.0020 (6)−0.0049 (6)
C170.0250 (12)0.0430 (16)0.0332 (12)−0.0056 (11)0.0043 (9)−0.0109 (10)
C180.0358 (13)0.0436 (15)0.0197 (10)0.0028 (11)0.0060 (9)0.0018 (9)
C190.0249 (12)0.0435 (15)0.0306 (11)−0.0001 (11)−0.0034 (9)−0.0019 (10)
S1—C11.645 (2)C15—O191.369 (2)
O1—C11.377 (2)C15—C161.399 (3)
O1—C21.381 (2)C16—H160.9500
C1—N11.334 (3)O17—C171.437 (3)
N1—N21.394 (2)O18—C181.438 (3)
N1—H10.90 (3)O19—C191.425 (3)
N2—C21.284 (3)C17—H17A0.9800
C2—C111.465 (3)C17—H17B0.9800
C11—C121.378 (3)C17—H17C0.9800
C11—C161.398 (3)C18—H18A0.9800
C12—C131.398 (3)C18—H18B0.9800
C12—H120.9500C18—H18C0.9800
C13—O171.359 (3)C19—H19A0.9800
C13—C141.397 (3)C19—H19B0.9800
C14—O181.378 (2)C19—H19C0.9800
C14—C151.393 (3)
C1—O1—C2106.11 (16)C14—C15—C16120.90 (18)
N1—C1—O1104.66 (17)C11—C16—C15117.8 (2)
N1—C1—S1132.15 (17)C11—C16—H16121.1
O1—C1—S1123.19 (17)C15—C16—H16121.1
C1—N1—N2112.87 (18)C13—O17—C17117.32 (16)
C1—N1—H1131.5 (16)C14—O18—C18114.68 (17)
N2—N1—H1115.3 (16)C15—O19—C19117.23 (17)
C2—N2—N1103.10 (17)O17—C17—H17A109.5
N2—C2—O1113.23 (17)O17—C17—H17B109.5
N2—C2—C11129.62 (18)H17A—C17—H17B109.5
O1—C2—C11117.04 (18)O17—C17—H17C109.5
C12—C11—C16122.09 (18)H17A—C17—H17C109.5
C12—C11—C2118.92 (18)H17B—C17—H17C109.5
C16—C11—C2118.92 (19)O18—C18—H18A109.5
C11—C12—C13119.51 (18)O18—C18—H18B109.5
C11—C12—H12120.2H18A—C18—H18B109.5
C13—C12—H12120.2O18—C18—H18C109.5
O17—C13—C14116.15 (18)H18A—C18—H18C109.5
O17—C13—C12124.19 (18)H18B—C18—H18C109.5
C14—C13—C12119.6 (2)O19—C19—H19A109.5
O18—C14—C15121.99 (18)O19—C19—H19B109.5
O18—C14—C13117.95 (19)H19A—C19—H19B109.5
C15—C14—C13119.95 (18)O19—C19—H19C109.5
O19—C15—C14115.45 (18)H19A—C19—H19C109.5
O19—C15—C16123.6 (2)H19B—C19—H19C109.5
C2—O1—C1—N11.4 (2)C12—C13—C14—O18174.8 (2)
C2—O1—C1—S1−178.55 (17)O17—C13—C14—C15179.80 (19)
O1—C1—N1—N2−1.4 (3)C12—C13—C14—C15−1.3 (3)
S1—C1—N1—N2178.49 (19)O18—C14—C15—O191.2 (3)
C1—N1—N2—C20.9 (3)C13—C14—C15—O19177.2 (2)
N1—N2—C2—O10.1 (2)O18—C14—C15—C16−176.7 (2)
N1—N2—C2—C11−175.9 (2)C13—C14—C15—C16−0.7 (3)
C1—O1—C2—N2−0.9 (2)C12—C11—C16—C15−1.8 (3)
C1—O1—C2—C11175.60 (19)C2—C11—C16—C15175.1 (2)
N2—C2—C11—C12175.1 (2)O19—C15—C16—C11−175.5 (2)
O1—C2—C11—C12−0.8 (3)C14—C15—C16—C112.2 (3)
N2—C2—C11—C16−1.9 (4)C14—C13—O17—C17−172.7 (2)
O1—C2—C11—C16−177.8 (2)C12—C13—O17—C178.5 (3)
C16—C11—C12—C13−0.2 (3)C15—C14—O18—C18−78.4 (3)
C2—C11—C12—C13−177.1 (2)C13—C14—O18—C18105.6 (2)
C11—C12—C13—O17−179.4 (2)C14—C15—O19—C19173.8 (2)
C11—C12—C13—C141.8 (3)C16—C15—O19—C19−8.3 (3)
O17—C13—C14—O18−4.1 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O17i0.90 (3)2.06 (3)2.881 (2)151 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O17i0.90 (3)2.06 (3)2.881 (2)151 (2)

Symmetry code: (i) .

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