Literature DB >> 21588242

Diethyl 4-hy-droxy-4-methyl-6-oxo-2-phenyl-cyclo-hexane-1,3-dicarboxyl-ate.

Hoong-Kun Fun, Madhukar Hemamalini, Mahesh Padaki, Arun M Isloor.   

Abstract

In the title mol-ecule, C(19)H(24)O(6), the cyclo-hexa-none ring adopts a chair conformation. The dihedral angle between the phenyl ring and the best plane through the six atoms of the cyclo-hexa-none ring is 89.68 (7)°. In the crystal structure, mol-ecules are linked via pairs of inter-molecular O-H⋯O hydrogen bonds into centrosymmetric dimers and these dimers are connected by C-H⋯O inter-actions into columns down the a axis.

Entities:  

Year:  2010        PMID: 21588242      PMCID: PMC3007213          DOI: 10.1107/S1600536810025018

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the applications of phenyl­cylcohexane, see: Adly et al. (2004 ▶); Pohl et al. (1977 ▶); Chu et al. (2005 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C19H24O6 M = 348.38 Monoclinic, a = 5.792 (2) Å b = 15.766 (6) Å c = 20.031 (7) Å β = 98.531 (10)° V = 1808.9 (11) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.40 × 0.10 × 0.06 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.963, T max = 0.994 37474 measured reflections 5256 independent reflections 3644 reflections with I > 2σ(I) R int = 0.075

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.122 S = 1.05 5256 reflections 233 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810025018/bt5276sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025018/bt5276Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H24O6F(000) = 744
Mr = 348.38Dx = 1.279 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4276 reflections
a = 5.792 (2) Åθ = 2.4–25.6°
b = 15.766 (6) ŵ = 0.10 mm1
c = 20.031 (7) ÅT = 100 K
β = 98.531 (10)°Needle, colourless
V = 1808.9 (11) Å30.40 × 0.10 × 0.06 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer5256 independent reflections
Radiation source: fine-focus sealed tube3644 reflections with I > 2σ(I)
graphiteRint = 0.075
φ and ω scansθmax = 30.1°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −8→8
Tmin = 0.963, Tmax = 0.994k = −22→22
37474 measured reflectionsl = −25→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0484P)2 + 0.4474P] where P = (Fo2 + 2Fc2)/3
5256 reflections(Δ/σ)max < 0.001
233 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.23 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.01230 (19)0.45072 (6)0.06556 (6)0.0303 (2)
O2−0.26845 (17)0.40000 (6)0.12086 (5)0.0264 (2)
O30.47676 (16)0.15467 (6)0.04607 (6)0.0272 (2)
O40.24998 (17)0.04265 (6)0.06139 (5)0.0249 (2)
O50.1168 (2)0.14395 (7)−0.08748 (6)0.0370 (3)
O60.03208 (17)0.36001 (7)−0.05989 (5)0.0249 (2)
C1−0.1446 (2)0.31138 (8)0.03806 (7)0.0188 (3)
H1A−0.28220.28170.04940.023*
C2−0.1754 (2)0.32386 (9)−0.03951 (7)0.0212 (3)
C3−0.1990 (2)0.23718 (9)−0.07382 (7)0.0247 (3)
H3A−0.34120.2101−0.06450.030*
H3B−0.21120.2447−0.12230.030*
C40.0059 (2)0.18060 (9)−0.04977 (7)0.0232 (3)
C50.0596 (2)0.17099 (8)0.02663 (7)0.0183 (3)
H5A−0.06620.13790.04170.022*
C60.0736 (2)0.25755 (8)0.06335 (7)0.0182 (3)
H6A0.21010.28780.05170.022*
C70.1109 (2)0.24444 (8)0.13937 (7)0.0195 (3)
C8−0.0573 (2)0.20405 (9)0.17164 (7)0.0240 (3)
H8A−0.19540.18520.14640.029*
C9−0.0195 (3)0.19190 (10)0.24098 (8)0.0296 (3)
H9A−0.13270.16510.26190.036*
C100.1857 (3)0.21942 (11)0.27934 (8)0.0328 (4)
H10A0.21050.21130.32580.039*
C110.3533 (3)0.25901 (11)0.24780 (8)0.0326 (4)
H11A0.49170.27740.27330.039*
C120.3165 (2)0.27152 (9)0.17833 (7)0.0251 (3)
H12A0.43050.29830.15770.030*
C13−0.1227 (2)0.39519 (9)0.07513 (7)0.0217 (3)
C14−0.2384 (3)0.47213 (10)0.16704 (8)0.0304 (3)
H14A−0.37970.48020.18690.036*
H14B−0.21170.52310.14220.036*
C15−0.0354 (3)0.45777 (11)0.22215 (9)0.0378 (4)
H15A−0.02920.50270.25470.057*
H15B0.10700.45690.20300.057*
H15C−0.05470.40450.24390.057*
C160.2866 (2)0.12288 (8)0.04565 (7)0.0191 (3)
C170.4559 (3)−0.00928 (10)0.08439 (8)0.0283 (3)
H17A0.59450.01840.07300.034*
H17B0.4407−0.06400.06210.034*
C180.4780 (4)−0.02101 (15)0.15860 (9)0.0539 (6)
H18A0.6084−0.05740.17350.081*
H18B0.3378−0.04630.16970.081*
H18C0.50220.03310.18060.081*
C19−0.3862 (2)0.37923 (10)−0.06405 (8)0.0275 (3)
H19A−0.40480.3838−0.11230.041*
H19B−0.36310.4347−0.04440.041*
H19C−0.52360.3541−0.05090.041*
H1O60.033 (5)0.422 (2)−0.0480 (14)0.106 (10)*
U11U22U33U12U13U23
O10.0355 (6)0.0239 (5)0.0336 (6)−0.0066 (4)0.0123 (5)−0.0006 (4)
O20.0255 (5)0.0263 (5)0.0293 (6)0.0004 (4)0.0102 (4)−0.0018 (4)
O30.0194 (5)0.0234 (5)0.0391 (6)−0.0008 (4)0.0051 (4)−0.0006 (4)
O40.0233 (5)0.0203 (5)0.0306 (6)0.0012 (4)0.0025 (4)0.0047 (4)
O50.0469 (7)0.0399 (7)0.0246 (6)0.0141 (5)0.0068 (5)−0.0014 (5)
O60.0225 (5)0.0263 (5)0.0267 (6)−0.0019 (4)0.0066 (4)0.0029 (4)
C10.0153 (6)0.0199 (6)0.0210 (7)−0.0006 (5)0.0017 (5)0.0017 (5)
C20.0172 (6)0.0231 (7)0.0226 (7)0.0010 (5)0.0003 (5)0.0032 (5)
C30.0253 (7)0.0254 (7)0.0215 (7)−0.0002 (5)−0.0029 (5)0.0021 (6)
C40.0261 (7)0.0204 (7)0.0226 (7)−0.0017 (5)0.0014 (5)0.0001 (5)
C50.0168 (6)0.0193 (6)0.0182 (6)−0.0006 (5)0.0011 (5)0.0016 (5)
C60.0159 (6)0.0186 (6)0.0200 (6)−0.0002 (5)0.0018 (5)0.0009 (5)
C70.0193 (6)0.0190 (6)0.0199 (7)0.0032 (5)0.0017 (5)0.0003 (5)
C80.0229 (7)0.0255 (7)0.0233 (7)0.0009 (5)0.0027 (5)0.0025 (6)
C90.0325 (8)0.0326 (8)0.0249 (8)0.0052 (6)0.0079 (6)0.0052 (6)
C100.0389 (9)0.0399 (9)0.0188 (7)0.0123 (7)0.0014 (6)0.0011 (7)
C110.0287 (8)0.0418 (9)0.0247 (8)0.0059 (6)−0.0048 (6)−0.0056 (7)
C120.0212 (6)0.0290 (7)0.0247 (7)0.0007 (5)0.0018 (5)−0.0032 (6)
C130.0199 (6)0.0221 (7)0.0232 (7)0.0026 (5)0.0037 (5)0.0040 (5)
C140.0346 (8)0.0249 (8)0.0334 (9)0.0059 (6)0.0106 (6)−0.0043 (6)
C150.0447 (10)0.0349 (9)0.0331 (9)0.0027 (7)0.0027 (7)−0.0063 (7)
C160.0217 (6)0.0189 (6)0.0163 (6)0.0005 (5)0.0020 (5)−0.0018 (5)
C170.0283 (7)0.0228 (7)0.0335 (8)0.0079 (6)0.0040 (6)0.0057 (6)
C180.0586 (12)0.0717 (14)0.0302 (10)0.0307 (11)0.0024 (9)0.0099 (9)
C190.0214 (7)0.0293 (8)0.0299 (8)0.0048 (6)−0.0021 (6)0.0048 (6)
O1—C131.2078 (17)C7—C81.3995 (19)
O2—C131.3369 (17)C8—C91.387 (2)
O2—C141.4599 (18)C8—H8A0.9300
O3—C161.2088 (16)C9—C101.386 (2)
O4—C161.3283 (17)C9—H9A0.9300
O4—C171.4634 (17)C10—C111.383 (2)
O5—C41.2088 (17)C10—H10A0.9300
O6—C21.4424 (17)C11—C121.390 (2)
O6—H1O61.01 (3)C11—H11A0.9300
C1—C131.512 (2)C12—H12A0.9300
C1—C61.5442 (18)C14—C151.506 (2)
C1—C21.5499 (19)C14—H14A0.9700
C1—H1A0.9800C14—H14B0.9700
C2—C191.5220 (19)C15—H15A0.9600
C2—C31.527 (2)C15—H15B0.9600
C3—C41.505 (2)C15—H15C0.9600
C3—H3A0.9700C17—C181.485 (2)
C3—H3B0.9700C17—H17A0.9700
C4—C51.5233 (19)C17—H17B0.9700
C5—C161.5168 (18)C18—H18A0.9600
C5—C61.5468 (19)C18—H18B0.9600
C5—H5A0.9800C18—H18C0.9600
C6—C71.5201 (19)C19—H19A0.9600
C6—H6A0.9800C19—H19B0.9600
C7—C121.3908 (19)C19—H19C0.9600
C13—O2—C14116.77 (11)C11—C10—C9119.38 (14)
C16—O4—C17117.13 (11)C11—C10—H10A120.3
C2—O6—H1O6106.9 (17)C9—C10—H10A120.3
C13—C1—C6108.32 (11)C10—C11—C12120.49 (14)
C13—C1—C2111.74 (11)C10—C11—H11A119.8
C6—C1—C2111.44 (11)C12—C11—H11A119.8
C13—C1—H1A108.4C11—C12—C7120.63 (14)
C6—C1—H1A108.4C11—C12—H12A119.7
C2—C1—H1A108.4C7—C12—H12A119.7
O6—C2—C19110.12 (11)O1—C13—O2123.86 (13)
O6—C2—C3104.43 (11)O1—C13—C1124.38 (12)
C19—C2—C3110.73 (12)O2—C13—C1111.76 (11)
O6—C2—C1110.92 (10)O2—C14—C15110.74 (12)
C19—C2—C1111.35 (11)O2—C14—H14A109.5
C3—C2—C1109.08 (11)C15—C14—H14A109.5
C4—C3—C2111.87 (11)O2—C14—H14B109.5
C4—C3—H3A109.2C15—C14—H14B109.5
C2—C3—H3A109.2H14A—C14—H14B108.1
C4—C3—H3B109.2C14—C15—H15A109.5
C2—C3—H3B109.2C14—C15—H15B109.5
H3A—C3—H3B107.9H15A—C15—H15B109.5
O5—C4—C3123.37 (13)C14—C15—H15C109.5
O5—C4—C5122.13 (13)H15A—C15—H15C109.5
C3—C4—C5114.48 (12)H15B—C15—H15C109.5
C16—C5—C4110.02 (11)O3—C16—O4124.81 (12)
C16—C5—C6109.83 (10)O3—C16—C5123.32 (12)
C4—C5—C6112.23 (11)O4—C16—C5111.88 (11)
C16—C5—H5A108.2O4—C17—C18109.29 (13)
C4—C5—H5A108.2O4—C17—H17A109.8
C6—C5—H5A108.2C18—C17—H17A109.8
C7—C6—C1113.02 (11)O4—C17—H17B109.8
C7—C6—C5110.25 (11)C18—C17—H17B109.8
C1—C6—C5110.26 (10)H17A—C17—H17B108.3
C7—C6—H6A107.7C17—C18—H18A109.5
C1—C6—H6A107.7C17—C18—H18B109.5
C5—C6—H6A107.7H18A—C18—H18B109.5
C12—C7—C8118.50 (13)C17—C18—H18C109.5
C12—C7—C6120.19 (12)H18A—C18—H18C109.5
C8—C7—C6121.30 (12)H18B—C18—H18C109.5
C9—C8—C7120.55 (13)C2—C19—H19A109.5
C9—C8—H8A119.7C2—C19—H19B109.5
C7—C8—H8A119.7H19A—C19—H19B109.5
C10—C9—C8120.45 (15)C2—C19—H19C109.5
C10—C9—H9A119.8H19A—C19—H19C109.5
C8—C9—H9A119.8H19B—C19—H19C109.5
C13—C1—C2—O666.12 (14)C1—C6—C7—C860.00 (16)
C6—C1—C2—O6−55.22 (14)C5—C6—C7—C8−63.89 (16)
C13—C1—C2—C19−56.89 (14)C12—C7—C8—C90.4 (2)
C6—C1—C2—C19−178.22 (11)C6—C7—C8—C9179.40 (13)
C13—C1—C2—C3−179.39 (11)C7—C8—C9—C10−0.2 (2)
C6—C1—C2—C359.27 (14)C8—C9—C10—C11−0.2 (2)
O6—C2—C3—C462.27 (14)C9—C10—C11—C120.3 (2)
C19—C2—C3—C4−179.24 (12)C10—C11—C12—C70.0 (2)
C1—C2—C3—C4−56.36 (15)C8—C7—C12—C11−0.3 (2)
C2—C3—C4—O5−128.63 (15)C6—C7—C12—C11−179.30 (13)
C2—C3—C4—C552.96 (16)C14—O2—C13—O1−8.1 (2)
O5—C4—C5—C169.17 (18)C14—O2—C13—C1170.78 (11)
C3—C4—C5—C16−172.40 (11)C6—C1—C13—O171.82 (17)
O5—C4—C5—C6131.79 (14)C2—C1—C13—O1−51.30 (17)
C3—C4—C5—C6−49.77 (15)C6—C1—C13—O2−107.10 (12)
C13—C1—C6—C756.26 (14)C2—C1—C13—O2129.77 (12)
C2—C1—C6—C7179.57 (11)C13—O2—C14—C15−78.28 (17)
C13—C1—C6—C5−179.85 (10)C17—O4—C16—O33.5 (2)
C2—C1—C6—C5−56.55 (14)C17—O4—C16—C5−176.62 (11)
C16—C5—C6—C7−61.15 (13)C4—C5—C16—O377.32 (16)
C4—C5—C6—C7176.13 (10)C6—C5—C16—O3−46.70 (17)
C16—C5—C6—C1173.38 (10)C4—C5—C16—O4−102.57 (13)
C4—C5—C6—C150.65 (14)C6—C5—C16—O4133.41 (12)
C1—C6—C7—C12−121.02 (14)C16—O4—C17—C18104.66 (16)
C5—C6—C7—C12115.09 (13)
D—H···AD—HH···AD···AD—H···A
O6—H1O6···O1i1.01 (3)2.05 (3)2.9958 (18)156 (2)
C1—H1A···O3ii0.982.443.323 (2)150
C8—H8A···O3ii0.932.603.493 (2)162
C12—H12A···O2iii0.932.563.468 (2)166
C19—H19C···O6ii0.962.553.396 (2)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H1O6⋯O1i1.01 (3)2.05 (3)2.9958 (18)156 (2)
C1—H1A⋯O3ii0.982.443.323 (2)150
C8—H8A⋯O3ii0.932.603.493 (2)162
C12—H12A⋯O2iii0.932.563.468 (2)166
C19—H19C⋯O6ii0.962.553.396 (2)146

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Discovery of 1-amino-4-phenylcyclohexane-1-carboxylic acid and its influence on agonist selectivity between human melanocortin-4 and -1 receptors in linear pentapeptides.

Authors:  Xin-Jie Chu; David Bartkovitz; Waleed Danho; Joseph Swistok; Adrian Wai-Hing Cheung; Grazyna Kurylko; Karen Rowan; Mitch Yeon; Lucia Franco; Lida Qi; Li Chen; Keith Yagaloff
Journal:  Bioorg Med Chem Lett       Date:  2005-11-15       Impact factor: 2.823

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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