| Literature DB >> 21588235 |
Sai Kumar Chakka, Oluseye K Onajole, Thavendran Govender, Glenn E M Maguire, Hong Su, Hendrik G Kruger.
Abstract
The structure of the title compound, C(13)H(14)O(2), a penta-cyclo-undecane cage derivative, exhibits unusual Csp(3)-Csp(3) single-bond lengths ranging from 1.505 (3) to 1.607 (2) Å and strained bond angles as small as 88.7 (1)° and as large as 121.0 (2)°. In this meso compound, an inter-nal non-crystallographic mirror plane exists, bis-ecting the mol-ecule. In the crystal, weak C-H⋯O hydrogen bonds link the mol-ecules into an infinite spiral about a twofold screw axis along the [100] direction.Entities:
Year: 2010 PMID: 21588235 PMCID: PMC3007444 DOI: 10.1107/S1600536810025055
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H14O2 | |
| Melting point: 382 K | |
| Orthorhombic, | Cu |
| Hall symbol: P 2ac 2ab | Cell parameters from 4922 reflections |
| θ = 5.7–68.4° | |
| µ = 0.72 mm−1 | |
| Prism, colourless | |
| 0.32 × 0.25 × 0.21 mm | |
| Bruker Kappa DUO APEXII diffractometer | 1055 independent reflections |
| Radiation source: fine-focus sealed tube | 1044 reflections with |
| graphite | |
| 0.5° φ scans and ω scans | θmax = 68.4°, θmin = 5.7° |
| Absorption correction: multi-scan ( | |
| 4922 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 1055 reflections | Δρmax = 0.21 e Å−3 |
| 137 parameters | Δρmin = −0.18 e Å−3 |
| 0 restraints | Extinction correction: |
| 0 constraints | Extinction coefficient: 0.0178 (18) |
| Primary atom site location: structure-invariant direct methods |
| Experimental. Half sphere of data collected using |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.7584 (2) | 0.32372 (19) | 0.54950 (9) | 0.0395 (4) | |
| C1 | 0.4669 (2) | 0.6969 (2) | 0.36778 (12) | 0.0255 (4) | |
| H1A | 0.4395 | 0.7912 | 0.4051 | 0.031* | |
| H1B | 0.3858 | 0.6915 | 0.3187 | 0.031* | |
| O2 | 1.05692 (19) | 0.5921 (2) | 0.41443 (11) | 0.0381 (4) | |
| C2 | 0.4768 (2) | 0.5374 (2) | 0.41804 (11) | 0.0233 (4) | |
| H2 | 0.3674 | 0.5019 | 0.4461 | 0.028* | |
| C3 | 0.6306 (2) | 0.5612 (2) | 0.47985 (11) | 0.0232 (4) | |
| H3 | 0.5988 | 0.6088 | 0.5371 | 0.028* | |
| C4 | 0.7082 (2) | 0.3924 (2) | 0.48546 (12) | 0.0251 (4) | |
| C5 | 0.7092 (2) | 0.3279 (2) | 0.39345 (12) | 0.0229 (4) | |
| C6 | 0.5531 (2) | 0.4167 (2) | 0.35149 (12) | 0.0231 (4) | |
| H6 | 0.4697 | 0.3474 | 0.3190 | 0.028* | |
| C7 | 0.6546 (2) | 0.6948 (2) | 0.33893 (11) | 0.0224 (4) | |
| H7 | 0.6912 | 0.7889 | 0.3023 | 0.027* | |
| C8 | 0.7553 (2) | 0.6726 (2) | 0.42436 (12) | 0.0229 (4) | |
| H8 | 0.7872 | 0.7772 | 0.4532 | 0.027* | |
| C9 | 0.9079 (2) | 0.5714 (2) | 0.39604 (12) | 0.0248 (4) | |
| C10 | 0.8361 (2) | 0.4397 (2) | 0.33708 (11) | 0.0231 (4) | |
| C11 | 0.6756 (2) | 0.5243 (2) | 0.29697 (11) | 0.0230 (4) | |
| H11 | 0.6630 | 0.5181 | 0.2328 | 0.028* | |
| C12 | 0.7267 (3) | 0.1443 (2) | 0.38573 (13) | 0.0316 (5) | |
| H12A | 0.7260 | 0.1133 | 0.3246 | 0.047* | |
| H12B | 0.6306 | 0.0915 | 0.4154 | 0.047* | |
| H12C | 0.8350 | 0.1096 | 0.4122 | 0.047* | |
| C13 | 0.9672 (3) | 0.3567 (3) | 0.28080 (13) | 0.0334 (5) | |
| H13A | 0.9104 | 0.2740 | 0.2452 | 0.050* | |
| H13B | 1.0541 | 0.3046 | 0.3172 | 0.050* | |
| H13C | 1.0223 | 0.4374 | 0.2433 | 0.050* |
| O1 | 0.0546 (10) | 0.0372 (8) | 0.0267 (7) | 0.0111 (8) | −0.0061 (7) | 0.0058 (6) |
| C1 | 0.0229 (9) | 0.0265 (9) | 0.0269 (9) | 0.0046 (7) | −0.0001 (7) | 0.0022 (8) |
| O2 | 0.0216 (7) | 0.0364 (8) | 0.0564 (10) | −0.0003 (6) | −0.0065 (7) | −0.0079 (7) |
| C2 | 0.0193 (8) | 0.0247 (9) | 0.0259 (8) | 0.0007 (7) | 0.0027 (7) | 0.0016 (7) |
| C3 | 0.0255 (8) | 0.0245 (9) | 0.0195 (8) | 0.0020 (8) | 0.0024 (7) | −0.0010 (7) |
| C4 | 0.0250 (8) | 0.0264 (9) | 0.0240 (8) | 0.0009 (8) | 0.0010 (7) | 0.0017 (7) |
| C5 | 0.0237 (9) | 0.0195 (9) | 0.0256 (9) | −0.0004 (7) | 0.0012 (7) | −0.0011 (7) |
| C6 | 0.0218 (8) | 0.0240 (9) | 0.0235 (8) | −0.0016 (8) | −0.0017 (7) | −0.0019 (7) |
| C7 | 0.0231 (9) | 0.0208 (8) | 0.0232 (8) | −0.0001 (8) | −0.0001 (7) | 0.0032 (7) |
| C8 | 0.0227 (8) | 0.0201 (8) | 0.0257 (9) | −0.0009 (8) | −0.0029 (8) | −0.0014 (7) |
| C9 | 0.0224 (9) | 0.0241 (9) | 0.0280 (9) | −0.0012 (8) | 0.0004 (7) | 0.0030 (7) |
| C10 | 0.0215 (9) | 0.0240 (9) | 0.0237 (8) | 0.0016 (8) | 0.0023 (7) | −0.0003 (7) |
| C11 | 0.0236 (9) | 0.0255 (9) | 0.0200 (8) | 0.0001 (8) | −0.0001 (7) | −0.0013 (7) |
| C12 | 0.0421 (11) | 0.0204 (9) | 0.0324 (9) | 0.0009 (9) | 0.0015 (9) | −0.0011 (7) |
| C13 | 0.0315 (11) | 0.0344 (11) | 0.0344 (9) | 0.0057 (9) | 0.0092 (9) | −0.0020 (9) |
| O1—C4 | 1.206 (2) | C6—H6 | 1.0000 |
| C1—C2 | 1.525 (3) | C7—C8 | 1.549 (2) |
| C1—C7 | 1.529 (2) | C7—C11 | 1.553 (3) |
| C1—H1A | 0.9900 | C7—H7 | 1.0000 |
| C1—H1B | 0.9900 | C8—C9 | 1.515 (3) |
| O2—C9 | 1.207 (3) | C8—H8 | 1.0000 |
| C2—C3 | 1.546 (2) | C9—C10 | 1.523 (3) |
| C2—C6 | 1.549 (2) | C10—C13 | 1.505 (3) |
| C2—H2 | 1.0000 | C10—C11 | 1.560 (2) |
| C3—C4 | 1.515 (3) | C11—H11 | 1.0000 |
| C3—C8 | 1.587 (2) | C12—H12A | 0.9800 |
| C3—H3 | 1.0000 | C12—H12B | 0.9800 |
| C4—C5 | 1.520 (2) | C12—H12C | 0.9800 |
| C5—C12 | 1.519 (2) | C13—H13A | 0.9800 |
| C5—C6 | 1.560 (2) | C13—H13B | 0.9800 |
| C5—C10 | 1.607 (2) | C13—H13C | 0.9800 |
| C6—C11 | 1.551 (3) | ||
| C2—C1—C7 | 95.26 (14) | C1—C7—H7 | 115.5 |
| C2—C1—H1A | 112.7 | C8—C7—H7 | 115.5 |
| C7—C1—H1A | 112.7 | C11—C7—H7 | 115.5 |
| C2—C1—H1B | 112.7 | C9—C8—C7 | 102.44 (14) |
| C7—C1—H1B | 112.7 | C9—C8—C3 | 108.72 (15) |
| H1A—C1—H1B | 110.2 | C7—C8—C3 | 102.71 (14) |
| C1—C2—C3 | 104.26 (15) | C9—C8—H8 | 113.9 |
| C1—C2—C6 | 103.29 (14) | C7—C8—H8 | 113.9 |
| C3—C2—C6 | 101.25 (14) | C3—C8—H8 | 113.9 |
| C1—C2—H2 | 115.4 | O2—C9—C8 | 127.53 (19) |
| C3—C2—H2 | 115.4 | O2—C9—C10 | 126.49 (19) |
| C6—C2—H2 | 115.4 | C8—C9—C10 | 105.96 (15) |
| C4—C3—C2 | 103.24 (14) | C13—C10—C9 | 114.82 (16) |
| C4—C3—C8 | 108.33 (14) | C13—C10—C11 | 121.02 (15) |
| C2—C3—C8 | 102.26 (13) | C9—C10—C11 | 102.51 (14) |
| C4—C3—H3 | 114.0 | C13—C10—C5 | 118.23 (16) |
| C2—C3—H3 | 114.0 | C9—C10—C5 | 107.86 (14) |
| C8—C3—H3 | 114.0 | C11—C10—C5 | 88.69 (13) |
| O1—C4—C3 | 127.20 (18) | C6—C11—C7 | 102.81 (13) |
| O1—C4—C5 | 127.29 (18) | C6—C11—C10 | 91.31 (13) |
| C3—C4—C5 | 105.51 (15) | C7—C11—C10 | 108.66 (14) |
| C12—C5—C4 | 114.86 (16) | C6—C11—H11 | 116.8 |
| C12—C5—C6 | 120.11 (16) | C7—C11—H11 | 116.8 |
| C4—C5—C6 | 102.91 (15) | C10—C11—H11 | 116.8 |
| C12—C5—C10 | 117.97 (16) | C5—C12—H12A | 109.5 |
| C4—C5—C10 | 108.24 (14) | C5—C12—H12B | 109.5 |
| C6—C5—C10 | 89.23 (13) | H12A—C12—H12B | 109.5 |
| C2—C6—C11 | 103.48 (14) | C5—C12—H12C | 109.5 |
| C2—C6—C5 | 108.76 (14) | H12A—C12—H12C | 109.5 |
| C11—C6—C5 | 90.77 (13) | H12B—C12—H12C | 109.5 |
| C2—C6—H6 | 116.8 | C10—C13—H13A | 109.5 |
| C11—C6—H6 | 116.8 | C10—C13—H13B | 109.5 |
| C5—C6—H6 | 116.8 | H13A—C13—H13B | 109.5 |
| C1—C7—C8 | 103.67 (14) | C10—C13—H13C | 109.5 |
| C1—C7—C11 | 103.47 (15) | H13A—C13—H13C | 109.5 |
| C8—C7—C11 | 101.38 (14) | H13B—C13—H13C | 109.5 |
| C7—C1—C2—C3 | 52.94 (15) | C2—C3—C8—C7 | −0.35 (17) |
| C7—C1—C2—C6 | −52.54 (16) | C7—C8—C9—O2 | 134.3 (2) |
| C1—C2—C3—C4 | −145.63 (14) | C3—C8—C9—O2 | −117.5 (2) |
| C6—C2—C3—C4 | −38.63 (17) | C7—C8—C9—C10 | −44.16 (18) |
| C1—C2—C3—C8 | −33.19 (16) | C3—C8—C9—C10 | 64.06 (18) |
| C6—C2—C3—C8 | 73.81 (15) | O2—C9—C10—C13 | −15.9 (3) |
| C2—C3—C4—O1 | −136.5 (2) | C8—C9—C10—C13 | 162.55 (16) |
| C8—C3—C4—O1 | 115.6 (2) | O2—C9—C10—C11 | −149.1 (2) |
| C2—C3—C4—C5 | 43.41 (18) | C8—C9—C10—C11 | 29.38 (17) |
| C8—C3—C4—C5 | −64.51 (17) | O2—C9—C10—C5 | 118.2 (2) |
| O1—C4—C5—C12 | 18.7 (3) | C8—C9—C10—C5 | −63.30 (18) |
| C3—C4—C5—C12 | −161.21 (16) | C12—C5—C10—C13 | −0.9 (3) |
| O1—C4—C5—C6 | 151.1 (2) | C4—C5—C10—C13 | 131.62 (18) |
| C3—C4—C5—C6 | −28.88 (18) | C6—C5—C10—C13 | −125.04 (17) |
| O1—C4—C5—C10 | −115.4 (2) | C12—C5—C10—C9 | −133.26 (18) |
| C3—C4—C5—C10 | 64.62 (18) | C4—C5—C10—C9 | −0.7 (2) |
| C1—C2—C6—C11 | 33.43 (17) | C6—C5—C10—C9 | 102.62 (16) |
| C3—C2—C6—C11 | −74.33 (16) | C12—C5—C10—C11 | 124.02 (18) |
| C1—C2—C6—C5 | 128.94 (15) | C4—C5—C10—C11 | −103.44 (15) |
| C3—C2—C6—C5 | 21.18 (17) | C6—C5—C10—C11 | −0.10 (12) |
| C12—C5—C6—C2 | 133.27 (18) | C2—C6—C11—C7 | −0.07 (17) |
| C4—C5—C6—C2 | 4.12 (18) | C5—C6—C11—C7 | −109.58 (14) |
| C10—C5—C6—C2 | −104.42 (15) | C2—C6—C11—C10 | 109.40 (14) |
| C12—C5—C6—C11 | −122.20 (18) | C5—C6—C11—C10 | −0.10 (12) |
| C4—C5—C6—C11 | 108.64 (14) | C1—C7—C11—C6 | −33.26 (17) |
| C10—C5—C6—C11 | 0.10 (12) | C8—C7—C11—C6 | 73.97 (16) |
| C2—C1—C7—C8 | −52.87 (16) | C1—C7—C11—C10 | −129.09 (15) |
| C2—C1—C7—C11 | 52.62 (15) | C8—C7—C11—C10 | −21.86 (17) |
| C1—C7—C8—C9 | 146.37 (15) | C13—C10—C11—C6 | 122.67 (18) |
| C11—C7—C8—C9 | 39.30 (17) | C9—C10—C11—C6 | −107.91 (14) |
| C1—C7—C8—C3 | 33.62 (18) | C5—C10—C11—C6 | 0.10 (12) |
| C11—C7—C8—C3 | −73.44 (16) | C13—C10—C11—C7 | −133.34 (17) |
| C4—C3—C8—C9 | 0.2 (2) | C9—C10—C11—C7 | −3.91 (17) |
| C2—C3—C8—C9 | −108.38 (15) | C5—C10—C11—C7 | 104.10 (14) |
| C4—C3—C8—C7 | 108.24 (16) |
| H··· | ||||
| C2—H2···O2i | 1.00 | 2.58 | 3.303 (2) | 129 |
| C3—H3···O2ii | 1.00 | 2.59 | 3.335 (2) | 131 |
Selected bond lengths (Å)
| C1—C2 | 1.525 (3) |
| C1—C7 | 1.529 (2) |
| C2—C3 | 1.546 (2) |
| C2—C6 | 1.549 (2) |
| C3—C4 | 1.515 (3) |
| C3—C8 | 1.587 (2) |
| C4—C5 | 1.520 (2) |
| C5—C12 | 1.519 (2) |
| C5—C6 | 1.560 (2) |
| C5—C10 | 1.607 (2) |
| C6—C11 | 1.551 (3) |
| C7—C8 | 1.549 (2) |
| C7—C11 | 1.553 (3) |
| C8—C9 | 1.515 (3) |
| C9—C10 | 1.523 (3) |
| C10—C13 | 1.505 (3) |
| C10—C11 | 1.560 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C2—H2⋯O2i | 1.00 | 2.58 | 3.303 (2) | 129 |
| C3—H3⋯O2ii | 1.00 | 2.59 | 3.335 (2) | 131 |
Symmetry codes: (i) ; (ii) .