Literature DB >> 21588235

1,7-Dimethyl-penta-cyclo-[5.4.0.0.0.0]undecane-8,11-dione.

Sai Kumar Chakka, Oluseye K Onajole, Thavendran Govender, Glenn E M Maguire, Hong Su, Hendrik G Kruger.   

Abstract

The structure of the title compound, C(13)H(14)O(2), a penta-cyclo-undecane cage derivative, exhibits unusual Csp(3)-Csp(3) single-bond lengths ranging from 1.505 (3) to 1.607 (2) Å and strained bond angles as small as 88.7 (1)° and as large as 121.0 (2)°. In this meso compound, an inter-nal non-crystallographic mirror plane exists, bis-ecting the mol-ecule. In the crystal, weak C-H⋯O hydrogen bonds link the mol-ecules into an infinite spiral about a twofold screw axis along the [100] direction.

Entities:  

Year:  2010        PMID: 21588235      PMCID: PMC3007444          DOI: 10.1107/S1600536810025055

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature and examples of PCU cage structures exhibiting CC bond lengths that deviate from the norm, see: Flippen-Anderson et al. (1991 ▶); Bott et al. (1998 ▶); Linden et al. (2005 ▶); Kruger et al. (2006 ▶). For the crystal packing of analogous PCU cage structures, see: Kruger et al. (2006 ▶); Boyle et al. (2007a ▶,b ▶). For the synthesis, see: Mehta et al. (1981 ▶). For hydrogen bonding, see: Desiraju et al. (1999 ▶).

Experimental

Crystal data

C13H14O2 M = 202.24 Orthorhombic, a = 7.7914 (2) Å b = 8.2149 (3) Å c = 15.4830 (5) Å V = 991.00 (5) Å3 Z = 4 Cu Kα radiation μ = 0.72 mm−1 T = 173 K 0.32 × 0.25 × 0.21 mm

Data collection

Bruker Kappa DUO APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.702, T max = 0.753 4922 measured reflections 1055 independent reflections 1044 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.090 S = 1.06 1055 reflections 137 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810025055/hb5509sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025055/hb5509Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14O2Dx = 1.356 Mg m3
Mr = 202.24Melting point: 382 K
Orthorhombic, P212121Cu Kα radiation, λ = 1.54184 Å
Hall symbol: P 2ac 2abCell parameters from 4922 reflections
a = 7.7914 (2) Åθ = 5.7–68.4°
b = 8.2149 (3) ŵ = 0.72 mm1
c = 15.4830 (5) ÅT = 173 K
V = 991.00 (5) Å3Prism, colourless
Z = 40.32 × 0.25 × 0.21 mm
F(000) = 432
Bruker Kappa DUO APEXII diffractometer1055 independent reflections
Radiation source: fine-focus sealed tube1044 reflections with I > 2σ(I)
graphiteRint = 0.020
0.5° φ scans and ω scansθmax = 68.4°, θmin = 5.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −9→9
Tmin = 0.702, Tmax = 0.753k = −9→9
4922 measured reflectionsl = −18→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.090w = 1/[σ2(Fo2) + (0.0627P)2 + 0.1901P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
1055 reflectionsΔρmax = 0.21 e Å3
137 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 constraintsExtinction coefficient: 0.0178 (18)
Primary atom site location: structure-invariant direct methods
Experimental. Half sphere of data collected using COLLECT strategy (Nonius, 2000). Crystal to detector distance = 30 mm; combination of φ and ω scans of 0.5°, 40 s per °, 2 iterations.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.7584 (2)0.32372 (19)0.54950 (9)0.0395 (4)
C10.4669 (2)0.6969 (2)0.36778 (12)0.0255 (4)
H1A0.43950.79120.40510.031*
H1B0.38580.69150.31870.031*
O21.05692 (19)0.5921 (2)0.41443 (11)0.0381 (4)
C20.4768 (2)0.5374 (2)0.41804 (11)0.0233 (4)
H20.36740.50190.44610.028*
C30.6306 (2)0.5612 (2)0.47985 (11)0.0232 (4)
H30.59880.60880.53710.028*
C40.7082 (2)0.3924 (2)0.48546 (12)0.0251 (4)
C50.7092 (2)0.3279 (2)0.39345 (12)0.0229 (4)
C60.5531 (2)0.4167 (2)0.35149 (12)0.0231 (4)
H60.46970.34740.31900.028*
C70.6546 (2)0.6948 (2)0.33893 (11)0.0224 (4)
H70.69120.78890.30230.027*
C80.7553 (2)0.6726 (2)0.42436 (12)0.0229 (4)
H80.78720.77720.45320.027*
C90.9079 (2)0.5714 (2)0.39604 (12)0.0248 (4)
C100.8361 (2)0.4397 (2)0.33708 (11)0.0231 (4)
C110.6756 (2)0.5243 (2)0.29697 (11)0.0230 (4)
H110.66300.51810.23280.028*
C120.7267 (3)0.1443 (2)0.38573 (13)0.0316 (5)
H12A0.72600.11330.32460.047*
H12B0.63060.09150.41540.047*
H12C0.83500.10960.41220.047*
C130.9672 (3)0.3567 (3)0.28080 (13)0.0334 (5)
H13A0.91040.27400.24520.050*
H13B1.05410.30460.31720.050*
H13C1.02230.43740.24330.050*
U11U22U33U12U13U23
O10.0546 (10)0.0372 (8)0.0267 (7)0.0111 (8)−0.0061 (7)0.0058 (6)
C10.0229 (9)0.0265 (9)0.0269 (9)0.0046 (7)−0.0001 (7)0.0022 (8)
O20.0216 (7)0.0364 (8)0.0564 (10)−0.0003 (6)−0.0065 (7)−0.0079 (7)
C20.0193 (8)0.0247 (9)0.0259 (8)0.0007 (7)0.0027 (7)0.0016 (7)
C30.0255 (8)0.0245 (9)0.0195 (8)0.0020 (8)0.0024 (7)−0.0010 (7)
C40.0250 (8)0.0264 (9)0.0240 (8)0.0009 (8)0.0010 (7)0.0017 (7)
C50.0237 (9)0.0195 (9)0.0256 (9)−0.0004 (7)0.0012 (7)−0.0011 (7)
C60.0218 (8)0.0240 (9)0.0235 (8)−0.0016 (8)−0.0017 (7)−0.0019 (7)
C70.0231 (9)0.0208 (8)0.0232 (8)−0.0001 (8)−0.0001 (7)0.0032 (7)
C80.0227 (8)0.0201 (8)0.0257 (9)−0.0009 (8)−0.0029 (8)−0.0014 (7)
C90.0224 (9)0.0241 (9)0.0280 (9)−0.0012 (8)0.0004 (7)0.0030 (7)
C100.0215 (9)0.0240 (9)0.0237 (8)0.0016 (8)0.0023 (7)−0.0003 (7)
C110.0236 (9)0.0255 (9)0.0200 (8)0.0001 (8)−0.0001 (7)−0.0013 (7)
C120.0421 (11)0.0204 (9)0.0324 (9)0.0009 (9)0.0015 (9)−0.0011 (7)
C130.0315 (11)0.0344 (11)0.0344 (9)0.0057 (9)0.0092 (9)−0.0020 (9)
O1—C41.206 (2)C6—H61.0000
C1—C21.525 (3)C7—C81.549 (2)
C1—C71.529 (2)C7—C111.553 (3)
C1—H1A0.9900C7—H71.0000
C1—H1B0.9900C8—C91.515 (3)
O2—C91.207 (3)C8—H81.0000
C2—C31.546 (2)C9—C101.523 (3)
C2—C61.549 (2)C10—C131.505 (3)
C2—H21.0000C10—C111.560 (2)
C3—C41.515 (3)C11—H111.0000
C3—C81.587 (2)C12—H12A0.9800
C3—H31.0000C12—H12B0.9800
C4—C51.520 (2)C12—H12C0.9800
C5—C121.519 (2)C13—H13A0.9800
C5—C61.560 (2)C13—H13B0.9800
C5—C101.607 (2)C13—H13C0.9800
C6—C111.551 (3)
C2—C1—C795.26 (14)C1—C7—H7115.5
C2—C1—H1A112.7C8—C7—H7115.5
C7—C1—H1A112.7C11—C7—H7115.5
C2—C1—H1B112.7C9—C8—C7102.44 (14)
C7—C1—H1B112.7C9—C8—C3108.72 (15)
H1A—C1—H1B110.2C7—C8—C3102.71 (14)
C1—C2—C3104.26 (15)C9—C8—H8113.9
C1—C2—C6103.29 (14)C7—C8—H8113.9
C3—C2—C6101.25 (14)C3—C8—H8113.9
C1—C2—H2115.4O2—C9—C8127.53 (19)
C3—C2—H2115.4O2—C9—C10126.49 (19)
C6—C2—H2115.4C8—C9—C10105.96 (15)
C4—C3—C2103.24 (14)C13—C10—C9114.82 (16)
C4—C3—C8108.33 (14)C13—C10—C11121.02 (15)
C2—C3—C8102.26 (13)C9—C10—C11102.51 (14)
C4—C3—H3114.0C13—C10—C5118.23 (16)
C2—C3—H3114.0C9—C10—C5107.86 (14)
C8—C3—H3114.0C11—C10—C588.69 (13)
O1—C4—C3127.20 (18)C6—C11—C7102.81 (13)
O1—C4—C5127.29 (18)C6—C11—C1091.31 (13)
C3—C4—C5105.51 (15)C7—C11—C10108.66 (14)
C12—C5—C4114.86 (16)C6—C11—H11116.8
C12—C5—C6120.11 (16)C7—C11—H11116.8
C4—C5—C6102.91 (15)C10—C11—H11116.8
C12—C5—C10117.97 (16)C5—C12—H12A109.5
C4—C5—C10108.24 (14)C5—C12—H12B109.5
C6—C5—C1089.23 (13)H12A—C12—H12B109.5
C2—C6—C11103.48 (14)C5—C12—H12C109.5
C2—C6—C5108.76 (14)H12A—C12—H12C109.5
C11—C6—C590.77 (13)H12B—C12—H12C109.5
C2—C6—H6116.8C10—C13—H13A109.5
C11—C6—H6116.8C10—C13—H13B109.5
C5—C6—H6116.8H13A—C13—H13B109.5
C1—C7—C8103.67 (14)C10—C13—H13C109.5
C1—C7—C11103.47 (15)H13A—C13—H13C109.5
C8—C7—C11101.38 (14)H13B—C13—H13C109.5
C7—C1—C2—C352.94 (15)C2—C3—C8—C7−0.35 (17)
C7—C1—C2—C6−52.54 (16)C7—C8—C9—O2134.3 (2)
C1—C2—C3—C4−145.63 (14)C3—C8—C9—O2−117.5 (2)
C6—C2—C3—C4−38.63 (17)C7—C8—C9—C10−44.16 (18)
C1—C2—C3—C8−33.19 (16)C3—C8—C9—C1064.06 (18)
C6—C2—C3—C873.81 (15)O2—C9—C10—C13−15.9 (3)
C2—C3—C4—O1−136.5 (2)C8—C9—C10—C13162.55 (16)
C8—C3—C4—O1115.6 (2)O2—C9—C10—C11−149.1 (2)
C2—C3—C4—C543.41 (18)C8—C9—C10—C1129.38 (17)
C8—C3—C4—C5−64.51 (17)O2—C9—C10—C5118.2 (2)
O1—C4—C5—C1218.7 (3)C8—C9—C10—C5−63.30 (18)
C3—C4—C5—C12−161.21 (16)C12—C5—C10—C13−0.9 (3)
O1—C4—C5—C6151.1 (2)C4—C5—C10—C13131.62 (18)
C3—C4—C5—C6−28.88 (18)C6—C5—C10—C13−125.04 (17)
O1—C4—C5—C10−115.4 (2)C12—C5—C10—C9−133.26 (18)
C3—C4—C5—C1064.62 (18)C4—C5—C10—C9−0.7 (2)
C1—C2—C6—C1133.43 (17)C6—C5—C10—C9102.62 (16)
C3—C2—C6—C11−74.33 (16)C12—C5—C10—C11124.02 (18)
C1—C2—C6—C5128.94 (15)C4—C5—C10—C11−103.44 (15)
C3—C2—C6—C521.18 (17)C6—C5—C10—C11−0.10 (12)
C12—C5—C6—C2133.27 (18)C2—C6—C11—C7−0.07 (17)
C4—C5—C6—C24.12 (18)C5—C6—C11—C7−109.58 (14)
C10—C5—C6—C2−104.42 (15)C2—C6—C11—C10109.40 (14)
C12—C5—C6—C11−122.20 (18)C5—C6—C11—C10−0.10 (12)
C4—C5—C6—C11108.64 (14)C1—C7—C11—C6−33.26 (17)
C10—C5—C6—C110.10 (12)C8—C7—C11—C673.97 (16)
C2—C1—C7—C8−52.87 (16)C1—C7—C11—C10−129.09 (15)
C2—C1—C7—C1152.62 (15)C8—C7—C11—C10−21.86 (17)
C1—C7—C8—C9146.37 (15)C13—C10—C11—C6122.67 (18)
C11—C7—C8—C939.30 (17)C9—C10—C11—C6−107.91 (14)
C1—C7—C8—C333.62 (18)C5—C10—C11—C60.10 (12)
C11—C7—C8—C3−73.44 (16)C13—C10—C11—C7−133.34 (17)
C4—C3—C8—C90.2 (2)C9—C10—C11—C7−3.91 (17)
C2—C3—C8—C9−108.38 (15)C5—C10—C11—C7104.10 (14)
C4—C3—C8—C7108.24 (16)
D—H···AD—HH···AD···AD—H···A
C2—H2···O2i1.002.583.303 (2)129
C3—H3···O2ii1.002.593.335 (2)131
Table 1

Selected bond lengths (Å)

C1—C21.525 (3)
C1—C71.529 (2)
C2—C31.546 (2)
C2—C61.549 (2)
C3—C41.515 (3)
C3—C81.587 (2)
C4—C51.520 (2)
C5—C121.519 (2)
C5—C61.560 (2)
C5—C101.607 (2)
C6—C111.551 (3)
C7—C81.549 (2)
C7—C111.553 (3)
C8—C91.515 (3)
C9—C101.523 (3)
C10—C131.505 (3)
C10—C111.560 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O2i1.002.583.303 (2)129
C3—H3⋯O2ii1.002.593.335 (2)131

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Anthony Linden; Jarosław Romański; Grzegorz Mlostoń; Heinz Heimgartner
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  2 in total

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