Literature DB >> 21588224

N'-[(E)-(1-Methyl-1H-pyrrol-2-yl)methyl-idene]benzohydrazide.

Abid Hussain, Zahid Shafiq, M Nawaz Tahir, Muhammad Yaqub.   

Abstract

In the title compound, C(13)H(13)N(3)O, the phenyl and pyrrole rings are inclined at 47.45 (8)°. In the crystal, inter-molecular N-H⋯O and C-H⋯O hydrogen bonds form R(2) (1)(6) ring motifs. Mol-ecules connected through these hydrogen bonds are arranged into polymeric chains extending along the c axis.

Entities:  

Year:  2010        PMID: 21588224      PMCID: PMC3007219          DOI: 10.1107/S1600536810025390

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Shafiq et al. (2009a ▶,b ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H13N3O M = 227.26 Monoclinic, a = 11.1170 (8) Å b = 11.6329 (9) Å c = 9.6735 (6) Å β = 110.241 (3)° V = 1173.75 (15) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.28 × 0.12 × 0.10 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.942, T max = 0.952 11164 measured reflections 2930 independent reflections 1770 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.139 S = 1.02 2930 reflections 155 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810025390/gk2289sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025390/gk2289Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13N3OF(000) = 480
Mr = 227.26Dx = 1.286 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1770 reflections
a = 11.1170 (8) Åθ = 2.6–28.4°
b = 11.6329 (9) ŵ = 0.09 mm1
c = 9.6735 (6) ÅT = 296 K
β = 110.241 (3)°Needle, colorless
V = 1173.75 (15) Å30.28 × 0.12 × 0.10 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2930 independent reflections
Radiation source: fine-focus sealed tube1770 reflections with I > 2σ(I)
graphiteRint = 0.047
Detector resolution: 7.50 pixels mm-1θmax = 28.4°, θmin = 2.6°
ω scansh = −14→14
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −15→15
Tmin = 0.942, Tmax = 0.952l = −12→9
11164 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0555P)2 + 0.160P] where P = (Fo2 + 2Fc2)/3
2930 reflections(Δ/σ)max < 0.001
155 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.71496 (14)0.18682 (11)0.12223 (13)0.0554 (5)
N10.75685 (15)0.26311 (12)0.34764 (15)0.0431 (5)
N20.80816 (15)0.36186 (12)0.30879 (16)0.0442 (5)
N30.93230 (15)0.58927 (13)0.29335 (16)0.0457 (5)
C10.66632 (16)0.07206 (14)0.29906 (18)0.0394 (5)
C20.67749 (19)0.05014 (16)0.4433 (2)0.0492 (7)
C30.6323 (2)−0.05186 (18)0.4795 (2)0.0602 (8)
C40.5752 (2)−0.13174 (18)0.3738 (3)0.0639 (8)
C50.5635 (2)−0.11093 (19)0.2302 (3)0.0695 (9)
C60.6095 (2)−0.01047 (18)0.1927 (2)0.0565 (7)
C70.71456 (16)0.17851 (14)0.24946 (19)0.0389 (6)
C80.80671 (18)0.44929 (15)0.38773 (19)0.0454 (6)
C90.85533 (18)0.56059 (15)0.37314 (19)0.0445 (6)
C100.8295 (2)0.66046 (17)0.4330 (2)0.0592 (8)
C110.8898 (2)0.75049 (18)0.3880 (3)0.0657 (9)
C120.9521 (2)0.70430 (16)0.3038 (2)0.0563 (7)
C130.9916 (2)0.51144 (17)0.2185 (2)0.0562 (8)
H10.752400.256590.434290.0517*
H20.715520.104220.516110.0591*
H30.64097−0.066330.577040.0723*
H40.54425−0.199930.399070.0767*
H50.52429−0.165070.157930.0833*
H60.602540.002380.095320.0679*
H80.771030.439800.460910.0545*
H100.780190.666880.493120.0711*
H110.887530.827790.411550.0788*
H121.001080.745190.259750.0676*
H13A1.051860.553100.186540.0843*
H13B0.926780.478410.134550.0843*
H13C1.035500.451370.284850.0843*
U11U22U33U12U13U23
O10.0848 (10)0.0528 (8)0.0376 (7)−0.0061 (7)0.0325 (7)−0.0043 (6)
N10.0592 (10)0.0417 (8)0.0346 (8)−0.0077 (7)0.0241 (7)−0.0013 (6)
N20.0558 (10)0.0409 (8)0.0399 (8)−0.0051 (7)0.0216 (7)0.0028 (7)
N30.0516 (9)0.0408 (8)0.0479 (9)−0.0001 (7)0.0214 (8)0.0031 (7)
C10.0378 (9)0.0440 (10)0.0371 (9)0.0005 (8)0.0138 (8)−0.0010 (8)
C20.0590 (12)0.0476 (11)0.0426 (11)−0.0056 (9)0.0195 (9)−0.0009 (8)
C30.0711 (14)0.0606 (13)0.0520 (12)−0.0075 (11)0.0251 (11)0.0097 (10)
C40.0647 (14)0.0540 (13)0.0751 (16)−0.0136 (10)0.0269 (12)0.0061 (11)
C50.0750 (16)0.0641 (14)0.0675 (15)−0.0270 (12)0.0224 (12)−0.0157 (12)
C60.0604 (13)0.0633 (13)0.0446 (11)−0.0146 (10)0.0165 (10)−0.0064 (10)
C70.0418 (10)0.0430 (10)0.0351 (9)0.0039 (8)0.0175 (8)−0.0013 (8)
C80.0568 (12)0.0453 (11)0.0388 (10)−0.0008 (8)0.0224 (9)0.0022 (8)
C90.0548 (11)0.0421 (10)0.0384 (10)0.0003 (8)0.0185 (9)0.0027 (8)
C100.0787 (15)0.0468 (11)0.0624 (13)0.0016 (10)0.0375 (12)−0.0031 (10)
C110.0869 (17)0.0394 (11)0.0789 (16)−0.0007 (10)0.0391 (14)−0.0016 (10)
C120.0662 (13)0.0407 (11)0.0668 (14)−0.0041 (9)0.0291 (11)0.0076 (9)
C130.0645 (14)0.0516 (12)0.0625 (13)−0.0037 (10)0.0346 (11)−0.0038 (10)
O1—C71.236 (2)C9—C101.372 (3)
N1—N21.391 (2)C10—C111.392 (3)
N1—C71.335 (2)C11—C121.350 (3)
N2—C81.275 (2)C2—H20.9300
N3—C91.377 (3)C3—H30.9300
N3—C121.354 (2)C4—H40.9300
N3—C131.452 (3)C5—H50.9300
N1—H10.8600C6—H60.9300
C1—C21.381 (2)C8—H80.9300
C1—C71.493 (2)C10—H100.9300
C1—C61.389 (3)C11—H110.9300
C2—C31.380 (3)C12—H120.9300
C3—C41.365 (3)C13—H13A0.9600
C4—C51.371 (4)C13—H13B0.9600
C5—C61.374 (3)C13—H13C0.9600
C8—C91.429 (3)
O1···N22.6801 (19)C13···H11iii3.0200
O1···N1i2.910 (2)H1···C22.5500
O1···C8i3.209 (2)H1···H22.0400
O1···H62.4500H1···H82.1500
O1···H1i2.1100H1···O1ii2.1100
O1···H2i2.6400H2···N12.6100
O1···H8i2.3800H2···H12.0400
N1···O1ii2.910 (2)H2···O1ii2.6400
N2···N33.011 (2)H2···N2ii2.6900
N2···O12.6801 (19)H2···H13Bii2.4300
N2···C133.030 (3)H3···C9ii3.0300
N3···N23.011 (2)H4···C7ix3.0800
N1···H22.6100H6···O12.4500
N2···H13B2.8200H6···C6vii2.9600
N2···H12iii2.7800H6···H6vii2.3900
N2···H2i2.6900H8···H12.1500
N2···H13C2.8200H8···O1ii2.3800
C3···C3iv3.328 (3)H11···C13vi3.0200
C8···O1ii3.209 (2)H12···H13A2.4700
C9···C9v3.591 (3)H12···N2vi2.7800
C11···C13vi3.599 (3)H12···H13Cvi2.4500
C13···C11iii3.599 (3)H13A···H122.4700
C13···N23.030 (3)H13A···C1vi3.1000
C1···H13Aiii3.1000H13A···C7vi2.8500
C2···H13Bii2.7700H13B···N22.8200
C2···H12.5500H13B···C2i2.7700
C6···H6vii2.9600H13B···H2i2.4300
C7···H13Aiii2.8500H13C···N22.8200
C7···H4viii3.0800H13C···C83.0400
C8···H13C3.0400H13C···C12iii3.0200
C9···H3i3.0300H13C···H12iii2.4500
C10···H13Cv2.9300H13C···C10v2.9300
C12···H13Cvi3.0200
N2—N1—C7119.54 (14)C1—C2—H2120.00
N1—N2—C8113.93 (16)C3—C2—H2120.00
C9—N3—C12108.30 (16)C2—C3—H3120.00
C9—N3—C13127.28 (16)C4—C3—H3120.00
C12—N3—C13124.28 (17)C3—C4—H4120.00
N2—N1—H1120.00C5—C4—H4120.00
C7—N1—H1120.00C4—C5—H5120.00
C6—C1—C7117.20 (15)C6—C5—H5120.00
C2—C1—C6118.66 (17)C1—C6—H6120.00
C2—C1—C7124.13 (16)C5—C6—H6120.00
C1—C2—C3120.11 (17)N2—C8—H8117.00
C2—C3—C4120.73 (19)C9—C8—H8117.00
C3—C4—C5119.7 (2)C9—C10—H10126.00
C4—C5—C6120.3 (2)C11—C10—H10126.00
C1—C6—C5120.52 (19)C10—C11—H11126.00
N1—C7—C1117.39 (15)C12—C11—H11127.00
O1—C7—N1121.93 (16)N3—C12—H12125.00
O1—C7—C1120.68 (15)C11—C12—H12125.00
N2—C8—C9125.45 (18)N3—C13—H13A109.00
N3—C9—C10107.02 (16)N3—C13—H13B110.00
C8—C9—C10125.74 (19)N3—C13—H13C110.00
N3—C9—C8127.20 (17)H13A—C13—H13B109.00
C9—C10—C11108.14 (19)H13A—C13—H13C109.00
C10—C11—C12107.00 (19)H13B—C13—H13C109.00
N3—C12—C11109.53 (19)
C7—N1—N2—C8158.43 (18)C2—C1—C7—O1171.48 (19)
N2—N1—C7—O1−2.8 (3)C2—C1—C7—N1−8.4 (3)
N2—N1—C7—C1177.08 (16)C6—C1—C7—O1−7.0 (3)
N1—N2—C8—C9178.86 (18)C6—C1—C7—N1173.11 (18)
C12—N3—C9—C8177.51 (19)C1—C2—C3—C4−0.6 (3)
C12—N3—C9—C10−0.4 (2)C2—C3—C4—C50.5 (4)
C13—N3—C9—C8−6.7 (3)C3—C4—C5—C60.3 (4)
C13—N3—C9—C10175.43 (18)C4—C5—C6—C1−1.1 (4)
C9—N3—C12—C11−0.1 (2)N2—C8—C9—N3−13.0 (3)
C13—N3—C12—C11−176.05 (19)N2—C8—C9—C10164.5 (2)
C6—C1—C2—C3−0.2 (3)N3—C9—C10—C110.7 (2)
C7—C1—C2—C3−178.67 (19)C8—C9—C10—C11−177.2 (2)
C2—C1—C6—C51.1 (3)C9—C10—C11—C12−0.7 (3)
C7—C1—C6—C5179.6 (2)C10—C11—C12—N30.5 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1ii0.862.112.910 (2)155
C8—H8···O1ii0.932.383.209 (2)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.862.112.910 (2)155
C8—H8⋯O1i0.932.383.209 (2)148

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N'-[(E)-(4-Bromo-2-thien-yl)methyl-idene]benzohydrazide 0.06-hydrate.

Authors:  Zahid Shafiq; Muhammad Yaqub; M Nawaz Tahir; Abid Hussain; M Saeed Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-19

3.  N'-[(E)-4-Hydr-oxy-3-methoxy-benzyl-idene]benzohydrazide.

Authors:  Zahid Shafiq; Muhammad Yaqub; M Nawaz Tahir; Abid Hussain; M Saeed Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  8 in total

1.  N'-(3,5-Dichloro-2-hy-droxy-benzyl-idene)-4-nitro-benzohydrazide methanol solvate.

Authors:  Hai-Yun Zhu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-15

2.  2,3-Dimethyl-N-[(E)-(1H-pyrrol-2-yl)methyl-idene]aniline.

Authors:  M Nawaz Tahir; Muhammad Ilyas Tariq; Shahbaz Ahmad; Muhammad Sarfraz; Riaz H Tariq
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

3.  3-Chloro-N'-(2-chloro-benzyl-idene)benzohydrazide.

Authors:  Yan Lei; Chuan Fu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15

4.  N'-(2-Chloro-benzyl-idene)-2-fluoro-benzohydrazide.

Authors:  Wei-Guang Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-24

5.  3-Chloro-N'-(2,4-dichloro-benzyl-idene)benzohydrazide.

Authors:  Yan Lei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-18

6.  N'-(2-Meth-oxy-benzyl-idene)-4-nitro-benzohydrazide.

Authors:  Hai-Yun Zhu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-09

7.  N'-(2-Chloro-benzyl-idene)-2-methyl-benzohydrazide.

Authors:  Wei-Guang Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

8.  4-Chloro-N'-(3,5-dibromo-2-hy-droxy-benzyl-idene)benzohydrazide.

Authors:  Wei-Guang Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-28
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.