Literature DB >> 21588222

6,7,8,9-Tetra-hydro-4b,9b-dihy-droxy-indano[1,2-b]indoline-9,10-dione monohydrate.

Muhammad Yaqub, Khalid Mahmood, M Nawaz Tahir, Zahid Shafiq, Abdul Rauf.   

Abstract

In the title compound, C(15)H(13)NO(4)·H(2)O, the organic mol-ecule adopts a V-shaped conformation in which the dihedral angle between the five-membered rings is 68.33 (5)°. The cyclo-hexenone ring adopts an envelope conformation, with one of the methyl-ene C atoms displaced by 0.607 (4) Å from the plane through the other atoms. In the crystal, inter-molecular N-H⋯(O,O) and O-H⋯O hydrogen bonds link the components into (001) sheeets and C-H⋯O inter-actions and aromatic π-π stacking [centroid-centroid separation = 3.6176 (19) Å] help to consolidate the packing.

Entities:  

Year:  2010        PMID: 21588222      PMCID: PMC3007351          DOI: 10.1107/S1600536810025328

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to ninhydrin, see: Friedman (1967 ▶); Moubasher (1948 ▶). For a related structure, see: Black et al. (1994 ▶).

Experimental

Crystal data

C15H13NO4·H2O M = 289.28 Orthorhombic, a = 10.703 (2) Å b = 13.275 (4) Å c = 19.683 (5) Å V = 2796.6 (12) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.30 × 0.22 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.970, T max = 0.978 17463 measured reflections 2532 independent reflections 1576 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.135 S = 1.08 2532 reflections 206 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810025328/hb5521sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025328/hb5521Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13NO4·H2OF(000) = 1216
Mr = 289.28Dx = 1.369 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 1576 reflections
a = 10.703 (2) Åθ = 2.7–25.3°
b = 13.275 (4) ŵ = 0.10 mm1
c = 19.683 (5) ÅT = 296 K
V = 2796.6 (12) Å3Prism, colourless
Z = 80.30 × 0.22 × 0.18 mm
Bruker Kappa APEXII CCD diffractometer2532 independent reflections
Radiation source: fine-focus sealed tube1576 reflections with I > 2σ(I)
graphiteRint = 0.066
Detector resolution: 8.20 pixels mm-1θmax = 25.5°, θmin = 2.7°
ω scansh = −12→12
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −15→15
Tmin = 0.970, Tmax = 0.978l = −23→23
17463 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0498P)2 + 1.2061P] where P = (Fo2 + 2Fc2)/3
2532 reflections(Δ/σ)max = 0.001
206 parametersΔρmax = 0.20 e Å3
2 restraintsΔρmin = −0.20 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6918 (2)−0.15555 (15)0.11236 (10)0.0602 (8)
O20.91068 (17)−0.08706 (14)0.03362 (9)0.0464 (7)
O30.64800 (18)−0.14565 (14)−0.04188 (10)0.0540 (7)
O40.98666 (17)0.09354 (16)0.09227 (9)0.0498 (7)
N10.8012 (2)0.15460 (17)0.04090 (11)0.0402 (7)
C10.7997 (2)0.0847 (2)0.15639 (13)0.0416 (9)
C20.8110 (3)0.1600 (2)0.20487 (14)0.0563 (11)
C30.7442 (4)0.1498 (3)0.26471 (15)0.0681 (13)
C40.6683 (3)0.0675 (3)0.27637 (16)0.0692 (13)
C50.6593 (3)−0.0089 (3)0.22942 (14)0.0582 (11)
C60.7266 (2)0.0012 (2)0.16905 (12)0.0430 (9)
C70.7359 (2)−0.07177 (19)0.11328 (13)0.0400 (9)
C80.8128 (2)−0.02380 (18)0.05584 (12)0.0366 (8)
C90.7294 (2)0.00822 (18)−0.00174 (12)0.0330 (8)
C100.6574 (2)−0.0522 (2)−0.04613 (13)0.0395 (9)
C110.5833 (3)0.0030 (2)−0.10052 (14)0.0482 (10)
C120.6310 (3)0.1070 (2)−0.11767 (14)0.0518 (10)
C130.6515 (3)0.16996 (19)−0.05470 (13)0.0450 (9)
C140.7286 (2)0.11153 (18)−0.00559 (12)0.0353 (8)
C150.8580 (2)0.08050 (19)0.08678 (12)0.0382 (8)
O50.4998 (3)0.2705 (2)0.12020 (14)0.0943 (11)
H10.808 (2)0.220 (2)0.0473 (13)0.0483*
H20.861920.215680.197390.0676*
H2A0.932 (3)−0.129 (2)0.0658 (15)0.0556*
H30.750620.199560.297810.0817*
H40.622570.063690.316480.0830*
H4A1.018 (3)0.085 (2)0.0537 (15)0.0597*
H50.61011−0.065320.237620.0701*
H11A0.58359−0.03738−0.141580.0578*
H11B0.497240.00876−0.085480.0578*
H12A0.571260.14056−0.147000.0621*
H12B0.709140.10108−0.142310.0621*
H13A0.693910.23208−0.066590.0540*
H13B0.571730.18695−0.034310.0540*
H510.452 (3)0.224 (2)0.0954 (17)0.1131*
H520.526 (4)0.239 (3)0.1564 (14)0.1131*
U11U22U33U12U13U23
O10.0834 (15)0.0458 (13)0.0515 (13)−0.0033 (11)0.0135 (11)0.0065 (10)
O20.0484 (11)0.0525 (12)0.0382 (11)0.0207 (9)0.0053 (9)0.0057 (9)
O30.0633 (13)0.0389 (11)0.0598 (13)−0.0041 (9)−0.0089 (10)−0.0009 (10)
O40.0396 (11)0.0760 (14)0.0337 (10)−0.0043 (9)−0.0021 (8)−0.0020 (10)
N10.0501 (13)0.0359 (12)0.0347 (12)−0.0002 (10)−0.0058 (10)0.0002 (10)
C10.0455 (15)0.0480 (17)0.0314 (14)0.0096 (13)−0.0008 (12)0.0009 (12)
C20.077 (2)0.0570 (19)0.0349 (16)0.0064 (16)−0.0027 (15)−0.0028 (14)
C30.099 (3)0.068 (2)0.0373 (18)0.020 (2)−0.0008 (18)−0.0101 (16)
C40.073 (2)0.097 (3)0.0377 (17)0.015 (2)0.0149 (16)0.0000 (18)
C50.0555 (19)0.080 (2)0.0392 (16)0.0044 (16)0.0089 (14)0.0058 (16)
C60.0424 (16)0.0544 (17)0.0321 (14)0.0108 (13)0.0018 (12)0.0031 (13)
C70.0449 (15)0.0399 (16)0.0352 (15)0.0082 (12)0.0020 (12)0.0054 (12)
C80.0376 (14)0.0393 (14)0.0328 (14)0.0089 (11)0.0035 (11)0.0011 (11)
C90.0342 (13)0.0357 (14)0.0291 (12)0.0029 (11)0.0013 (10)0.0014 (10)
C100.0373 (15)0.0454 (16)0.0357 (14)0.0021 (12)0.0034 (12)−0.0018 (12)
C110.0462 (16)0.0570 (18)0.0414 (16)0.0024 (14)−0.0084 (13)−0.0042 (14)
C120.0590 (18)0.0549 (18)0.0415 (16)0.0024 (14)−0.0110 (14)0.0083 (14)
C130.0486 (16)0.0420 (16)0.0445 (16)0.0051 (12)−0.0083 (13)0.0063 (12)
C140.0347 (14)0.0417 (15)0.0296 (13)0.0015 (11)0.0030 (11)0.0009 (11)
C150.0385 (15)0.0460 (16)0.0301 (13)0.0030 (12)−0.0009 (11)0.0001 (11)
O50.122 (2)0.090 (2)0.0708 (18)−0.0540 (17)−0.0238 (16)0.0200 (14)
O1—C71.208 (3)C7—C81.537 (3)
O2—C81.412 (3)C8—C91.504 (3)
O3—C101.247 (3)C8—C151.588 (3)
O4—C151.392 (3)C9—C141.374 (3)
O2—H2A0.87 (3)C9—C101.414 (3)
O4—H4A0.84 (3)C10—C111.521 (4)
O5—H510.94 (3)C11—C121.510 (4)
O5—H520.87 (3)C12—C131.511 (4)
N1—C141.330 (3)C13—C141.489 (4)
N1—C151.467 (3)C2—H20.9300
N1—H10.88 (3)C3—H30.9300
C1—C61.380 (4)C4—H40.9300
C1—C21.387 (4)C5—H50.9300
C1—C151.507 (3)C11—H11B0.9700
C2—C31.385 (4)C11—H11A0.9700
C3—C41.381 (6)C12—H12A0.9700
C4—C51.376 (5)C12—H12B0.9700
C5—C61.396 (4)C13—H13B0.9700
C6—C71.467 (4)C13—H13A0.9700
C8—O2—H2A110 (2)C12—C13—C14109.0 (2)
C15—O4—H4A108 (2)N1—C14—C13123.1 (2)
H51—O5—H52107 (3)N1—C14—C9112.8 (2)
C14—N1—C15112.2 (2)C9—C14—C13124.0 (2)
C15—N1—H1122.6 (16)N1—C15—C8102.84 (18)
C14—N1—H1124.8 (16)C1—C15—C8104.77 (19)
C2—C1—C6120.3 (2)O4—C15—N1112.0 (2)
C2—C1—C15128.0 (2)O4—C15—C1109.54 (19)
C6—C1—C15111.7 (2)N1—C15—C1111.31 (19)
C1—C2—C3118.0 (3)O4—C15—C8116.07 (19)
C2—C3—C4121.5 (3)C1—C2—H2121.00
C3—C4—C5120.9 (3)C3—C2—H2121.00
C4—C5—C6117.7 (3)C4—C3—H3119.00
C5—C6—C7127.5 (3)C2—C3—H3119.00
C1—C6—C5121.6 (3)C3—C4—H4120.00
C1—C6—C7110.9 (2)C5—C4—H4120.00
C6—C7—C8108.3 (2)C4—C5—H5121.00
O1—C7—C6126.3 (2)C6—C5—H5121.00
O1—C7—C8125.4 (2)C10—C11—H11B109.00
O2—C8—C9112.03 (19)C12—C11—H11A109.00
O2—C8—C7112.26 (19)C12—C11—H11B108.00
C7—C8—C9110.71 (18)H11A—C11—H11B108.00
C7—C8—C15104.02 (19)C10—C11—H11A109.00
C9—C8—C15102.91 (19)C11—C12—H12B109.00
O2—C8—C15114.29 (18)C13—C12—H12A109.00
C8—C9—C14109.1 (2)C11—C12—H12A109.00
C10—C9—C14121.9 (2)H12A—C12—H12B108.00
C8—C9—C10129.0 (2)C13—C12—H12B109.00
O3—C10—C9124.5 (2)C12—C13—H13A110.00
O3—C10—C11119.0 (2)C12—C13—H13B110.00
C9—C10—C11116.5 (2)C14—C13—H13B110.00
C10—C11—C12114.9 (2)H13A—C13—H13B108.00
C11—C12—C13111.8 (2)C14—C13—H13A110.00
C15—N1—C14—C9−3.2 (3)C6—C7—C8—C155.2 (2)
C15—N1—C14—C13174.7 (2)O2—C8—C9—C1060.0 (3)
C14—N1—C15—O4129.3 (2)O2—C8—C9—C14−121.6 (2)
C14—N1—C15—C1−107.7 (2)C7—C8—C9—C10−66.1 (3)
C14—N1—C15—C84.0 (2)C7—C8—C9—C14112.3 (2)
C6—C1—C2—C3−1.9 (4)C15—C8—C9—C10−176.7 (2)
C15—C1—C2—C3177.3 (3)C15—C8—C9—C141.7 (2)
C2—C1—C6—C52.0 (4)O2—C8—C15—O4−4.1 (3)
C2—C1—C6—C7−175.7 (2)O2—C8—C15—N1118.5 (2)
C15—C1—C6—C5−177.3 (2)O2—C8—C15—C1−125.1 (2)
C15—C1—C6—C75.1 (3)C7—C8—C15—O4118.6 (2)
C2—C1—C15—O454.1 (3)C7—C8—C15—N1−118.75 (19)
C2—C1—C15—N1−70.3 (3)C7—C8—C15—C1−2.3 (2)
C2—C1—C15—C8179.3 (2)C9—C8—C15—O4−125.8 (2)
C6—C1—C15—O4−126.7 (2)C9—C8—C15—N1−3.2 (2)
C6—C1—C15—N1108.9 (2)C9—C8—C15—C1113.25 (19)
C6—C1—C15—C8−1.5 (3)C8—C9—C10—O33.4 (4)
C1—C2—C3—C40.0 (5)C8—C9—C10—C11−179.2 (2)
C2—C3—C4—C51.9 (6)C14—C9—C10—O3−174.8 (2)
C3—C4—C5—C6−1.8 (5)C14—C9—C10—C112.6 (3)
C4—C5—C6—C1−0.1 (4)C8—C9—C14—N10.8 (3)
C4—C5—C6—C7177.1 (3)C8—C9—C14—C13−177.1 (2)
C1—C6—C7—O1173.0 (2)C10—C9—C14—N1179.3 (2)
C1—C6—C7—C8−6.5 (3)C10—C9—C14—C131.4 (4)
C5—C6—C7—O1−4.4 (4)O3—C10—C11—C12−160.4 (2)
C5—C6—C7—C8176.1 (3)C9—C10—C11—C1222.0 (3)
O1—C7—C8—O2−50.3 (3)C10—C11—C12—C13−49.8 (3)
O1—C7—C8—C975.7 (3)C11—C12—C13—C1450.8 (3)
O1—C7—C8—C15−174.4 (2)C12—C13—C14—N1153.7 (2)
C6—C7—C8—O2129.2 (2)C12—C13—C14—C9−28.7 (3)
C6—C7—C8—C9−104.8 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.88 (3)2.09 (3)2.887 (3)150 (2)
N1—H1···O3i0.88 (3)2.55 (3)3.159 (3)127 (2)
O2—H2A···O5ii0.87 (3)1.86 (3)2.720 (3)168 (3)
O4—H4A···O2iii0.84 (3)1.88 (3)2.712 (3)171 (3)
O5—H51···O3iv0.94 (3)1.83 (3)2.762 (4)174 (3)
C2—H2···O1i0.932.463.052 (3)122
C4—H4···O4v0.932.343.253 (4)165
C13—H13A···O3i0.972.393.265 (4)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.88 (3)2.09 (3)2.887 (3)150 (2)
N1—H1⋯O3i0.88 (3)2.55 (3)3.159 (3)127 (2)
O2—H2A⋯O5ii0.87 (3)1.86 (3)2.720 (3)168 (3)
O4—H4A⋯O2iii0.84 (3)1.88 (3)2.712 (3)171 (3)
O5—H51⋯O3iv0.94 (3)1.83 (3)2.762 (4)174 (3)
C2—H2⋯O1i0.932.463.052 (3)122
C4—H4⋯O4v0.932.343.253 (4)165
C13—H13A⋯O3i0.972.393.265 (4)149

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  2 in total
  1 in total

1.  (±)-4,12,15,18,26-Penta-hydroxy-13,17-dioxahepta-cyclo-[14.10.0.0.0.0.0.0]hexa-cosa-1,3(14),6(11),7,9,15,19,21,23-nona-ene-5,25-dione monohydrate.

Authors:  Khalid Mahmood; Muhammad Yaqub; M Nawaz Tahir; Zahid Shafiq; Ashfaq Mahmood Qureshi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-19
  1 in total

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