Literature DB >> 21588219

5-Hy-droxy-7-meth-oxy-2-methyl-4H-chromen-4-one from Dysoxylum macrocarpum (Meliaceae).

Ibrahim A Najmuldeen, Abdul Hamid Abdul Hadi, Khalijah Awang, Khalit Mohamad, Seik Weng Ng.   

Abstract

Both independent mol-ecules in the asymmetric unit of the title compound, C(11)H(10)O(4), are almost planar (r.m.s. deviations = 0.011 and 0.033 Å). In both mol-ecules, the hy-droxy group is intra-molecularly hydrogen bonded to the ketonic O atom. The independent mol-ecules are stacked alternately along the a axis, with the centroids of their chromene ring separated by distances of 4.490 (1) and 3.621 (1) Å.

Entities:  

Year:  2010        PMID: 21588219      PMCID: PMC3007310          DOI: 10.1107/S1600536810025146

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For studies on other Dysoxylum species, see: Ismail et al. (2009 ▶); Lakshmi et al. (2007 ▶); Mohamad et al. (1999 ▶); Mohanakumara et al. (2010 ▶); Senthil Nathan et al. (2008 ▶); Xie et al. (2008 ▶).

Experimental

Crystal data

C11H10O4 M = 206.19 Monoclinic, a = 7.7393 (3) Å b = 14.5373 (6) Å c = 16.8263 (7) Å β = 98.848 (1)° V = 1870.57 (13) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.35 × 0.35 × 0.02 mm

Data collection

Bruker SMART APEXII area-detector diffractometer 17796 measured reflections 4285 independent reflections 3795 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.108 S = 1.02 4285 reflections 283 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810025146/ci5120sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025146/ci5120Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H10O4F(000) = 864
Mr = 206.19Dx = 1.464 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9622 reflections
a = 7.7393 (3) Åθ = 2.5–28.3°
b = 14.5373 (6) ŵ = 0.11 mm1
c = 16.8263 (7) ÅT = 100 K
β = 98.848 (1)°Plate, colourless
V = 1870.57 (13) Å30.35 × 0.35 × 0.02 mm
Z = 8
Bruker SMART APEXII area-detector diffractometer3795 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.017
graphiteθmax = 27.5°, θmin = 1.9°
ω scansh = −10→10
17796 measured reflectionsk = −18→18
4285 independent reflectionsl = −20→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0679P)2 + 0.4625P] where P = (Fo2 + 2Fc2)/3
4285 reflections(Δ/σ)max = 0.001
283 parametersΔρmax = 0.34 e Å3
2 restraintsΔρmin = −0.28 e Å3
xyzUiso*/Ueq
O10.49963 (9)0.31112 (5)0.80755 (4)0.01545 (16)
O20.54836 (10)0.03128 (5)0.81510 (5)0.02311 (18)
O30.66721 (11)0.03755 (5)0.67769 (5)0.02290 (18)
O40.71726 (10)0.32572 (5)0.55887 (4)0.01882 (17)
O51.05826 (9)0.38133 (5)0.70570 (4)0.01574 (16)
O61.12544 (10)0.10446 (5)0.73680 (5)0.02192 (17)
O71.00123 (11)0.11679 (5)0.87114 (5)0.02253 (18)
O80.82751 (10)0.40629 (5)0.95136 (4)0.01974 (17)
C10.39489 (14)0.32353 (7)0.93075 (6)0.0200 (2)
H1A0.35760.28640.97370.030*
H1B0.29640.36070.90490.030*
H1C0.49090.36410.95360.030*
C20.45527 (12)0.26180 (7)0.87004 (6)0.0163 (2)
C30.46768 (13)0.16950 (7)0.87405 (6)0.0184 (2)
H3A0.43290.13830.91860.022*
C40.53257 (12)0.11694 (7)0.81228 (6)0.0172 (2)
C50.58040 (12)0.17065 (6)0.74648 (6)0.0147 (2)
C60.64722 (12)0.12963 (7)0.68075 (6)0.0160 (2)
C70.69215 (12)0.18335 (7)0.61950 (6)0.0167 (2)
H7A0.73790.15590.57590.020*
C80.66943 (12)0.27902 (7)0.62233 (6)0.0148 (2)
C90.60437 (12)0.32217 (6)0.68517 (6)0.01419 (19)
H90.58950.38700.68640.017*
C100.56218 (12)0.26615 (6)0.74610 (5)0.01350 (19)
C110.69519 (14)0.42341 (7)0.55749 (6)0.0205 (2)
H11A0.72870.44830.50790.031*
H11B0.76930.45060.60410.031*
H11C0.57250.43830.55960.031*
C121.16596 (14)0.38672 (7)0.58240 (6)0.0200 (2)
H12A1.21530.34770.54400.030*
H12B1.25120.43400.60330.030*
H12C1.05900.41620.55530.030*
C131.12406 (12)0.32926 (7)0.65014 (6)0.0163 (2)
C141.14769 (13)0.23789 (7)0.65825 (6)0.0180 (2)
H141.19400.20470.61770.022*
C151.10416 (12)0.18917 (7)0.72722 (6)0.0164 (2)
C161.03515 (12)0.24579 (6)0.78581 (6)0.01414 (19)
C170.98490 (12)0.20810 (6)0.85677 (6)0.0159 (2)
C180.91807 (12)0.26380 (7)0.91094 (6)0.0167 (2)
H180.88580.23860.95860.020*
C190.89823 (12)0.35822 (7)0.89482 (6)0.0151 (2)
C200.94688 (12)0.39841 (6)0.82650 (6)0.01472 (19)
H200.93480.46260.81670.018*
C211.01372 (12)0.34029 (6)0.77342 (5)0.01377 (19)
C220.78973 (16)0.50156 (7)0.93552 (7)0.0250 (2)
H22A0.73440.52750.97910.038*
H22B0.71030.50770.88450.038*
H22C0.89860.53470.93210.038*
H30.634 (2)0.0179 (12)0.7204 (8)0.061 (6)*
H71.043 (3)0.0968 (13)0.8304 (9)0.070 (6)*
U11U22U33U12U13U23
O10.0181 (3)0.0157 (3)0.0134 (3)0.0013 (3)0.0054 (3)0.0001 (2)
O20.0254 (4)0.0153 (4)0.0293 (4)0.0011 (3)0.0063 (3)0.0063 (3)
O30.0307 (4)0.0125 (3)0.0266 (4)0.0021 (3)0.0078 (3)−0.0015 (3)
O40.0253 (4)0.0179 (4)0.0146 (3)0.0024 (3)0.0074 (3)0.0023 (3)
O50.0205 (3)0.0151 (3)0.0125 (3)−0.0002 (3)0.0055 (3)0.0011 (2)
O60.0276 (4)0.0138 (3)0.0246 (4)0.0010 (3)0.0045 (3)−0.0030 (3)
O70.0336 (4)0.0123 (3)0.0226 (4)0.0006 (3)0.0071 (3)0.0036 (3)
O80.0259 (4)0.0179 (4)0.0174 (4)0.0017 (3)0.0094 (3)−0.0009 (3)
C10.0191 (5)0.0263 (5)0.0152 (5)−0.0007 (4)0.0048 (4)−0.0019 (4)
C20.0131 (4)0.0229 (5)0.0129 (4)−0.0009 (4)0.0020 (3)0.0014 (4)
C30.0175 (5)0.0222 (5)0.0157 (5)−0.0006 (4)0.0033 (4)0.0049 (4)
C40.0141 (4)0.0171 (5)0.0198 (5)−0.0005 (3)0.0007 (3)0.0032 (4)
C50.0135 (4)0.0146 (4)0.0157 (5)0.0000 (3)0.0013 (3)0.0006 (3)
C60.0154 (4)0.0139 (4)0.0180 (5)0.0009 (3)0.0003 (3)−0.0022 (3)
C70.0176 (5)0.0173 (5)0.0151 (4)0.0018 (3)0.0024 (3)−0.0034 (3)
C80.0144 (4)0.0182 (5)0.0117 (4)−0.0005 (3)0.0014 (3)0.0012 (3)
C90.0152 (4)0.0126 (4)0.0146 (4)0.0004 (3)0.0016 (3)0.0008 (3)
C100.0127 (4)0.0152 (4)0.0127 (4)0.0008 (3)0.0020 (3)−0.0014 (3)
C110.0251 (5)0.0175 (5)0.0200 (5)0.0011 (4)0.0064 (4)0.0051 (4)
C120.0216 (5)0.0232 (5)0.0162 (5)−0.0034 (4)0.0059 (4)0.0006 (4)
C130.0143 (4)0.0209 (5)0.0136 (4)−0.0031 (3)0.0023 (3)−0.0024 (3)
C140.0178 (4)0.0206 (5)0.0164 (5)−0.0015 (4)0.0050 (4)−0.0049 (4)
C150.0144 (4)0.0157 (4)0.0186 (5)−0.0011 (3)0.0007 (3)−0.0030 (4)
C160.0140 (4)0.0137 (4)0.0143 (4)−0.0010 (3)0.0010 (3)−0.0002 (3)
C170.0165 (4)0.0137 (4)0.0170 (5)−0.0016 (3)0.0008 (3)0.0021 (3)
C180.0175 (5)0.0178 (5)0.0151 (4)−0.0023 (4)0.0029 (3)0.0032 (3)
C190.0142 (4)0.0175 (5)0.0139 (4)−0.0007 (3)0.0030 (3)−0.0022 (3)
C200.0164 (4)0.0126 (4)0.0152 (4)0.0000 (3)0.0025 (3)0.0004 (3)
C210.0135 (4)0.0156 (4)0.0120 (4)−0.0020 (3)0.0014 (3)0.0018 (3)
C220.0343 (6)0.0178 (5)0.0250 (5)0.0052 (4)0.0110 (4)−0.0019 (4)
O1—C21.3596 (11)C7—H7A0.95
O1—C101.3729 (11)C8—C91.3888 (13)
O2—C41.2514 (12)C9—C101.3870 (13)
O3—C61.3494 (11)C9—H90.95
O3—H30.850 (9)C11—H11A0.98
O4—C81.3637 (11)C11—H11B0.98
O4—C111.4302 (12)C11—H11C0.98
O5—C131.3611 (11)C12—C131.4886 (13)
O5—C211.3761 (11)C12—H12A0.98
O6—C151.2496 (12)C12—H12B0.98
O7—C171.3517 (11)C12—H12C0.98
O7—H70.852 (9)C13—C141.3450 (14)
O8—C191.3612 (11)C14—C151.4430 (14)
O8—C221.4319 (12)C14—H140.95
C1—C21.4880 (13)C15—C161.4480 (13)
C1—H1A0.98C16—C211.3956 (13)
C1—H1B0.98C16—C171.4212 (13)
C1—H1C0.98C17—C181.3780 (14)
C2—C31.3463 (14)C18—C191.4030 (13)
C3—C41.4412 (14)C18—H180.95
C3—H3A0.95C19—C201.3920 (13)
C4—C51.4486 (13)C20—C211.3862 (13)
C5—C101.3955 (13)C20—H200.95
C5—C61.4220 (13)C22—H22A0.98
C6—C71.3795 (14)C22—H22B0.98
C7—C81.4035 (13)C22—H22C0.98
C2—O1—C10119.45 (8)O4—C11—H11C109.5
C6—O3—H3104.5 (13)H11A—C11—H11C109.5
C8—O4—C11117.45 (7)H11B—C11—H11C109.5
C13—O5—C21119.70 (8)C13—C12—H12A109.5
C17—O7—H7103.2 (14)C13—C12—H12B109.5
C19—O8—C22117.32 (8)H12A—C12—H12B109.5
C2—C1—H1A109.5C13—C12—H12C109.5
C2—C1—H1B109.5H12A—C12—H12C109.5
H1A—C1—H1B109.5H12B—C12—H12C109.5
C2—C1—H1C109.5C14—C13—O5122.61 (9)
H1A—C1—H1C109.5C14—C13—C12126.13 (9)
H1B—C1—H1C109.5O5—C13—C12111.25 (8)
C3—C2—O1122.67 (9)C13—C14—C15121.42 (9)
C3—C2—C1126.45 (9)C13—C14—H14119.3
O1—C2—C1110.87 (8)C15—C14—H14119.3
C2—C3—C4121.49 (9)O6—C15—C14123.03 (9)
C2—C3—H3A119.3O6—C15—C16121.83 (9)
C4—C3—H3A119.3C14—C15—C16115.14 (9)
O2—C4—C3122.89 (9)C21—C16—C17117.60 (8)
O2—C4—C5122.03 (9)C21—C16—C15120.37 (9)
C3—C4—C5115.08 (9)C17—C16—C15122.02 (9)
C10—C5—C6117.53 (8)O7—C17—C18119.54 (9)
C10—C5—C4120.14 (9)O7—C17—C16119.91 (9)
C6—C5—C4122.32 (9)C18—C17—C16120.55 (9)
O3—C6—C7119.31 (9)C17—C18—C19119.21 (9)
O3—C6—C5120.21 (9)C17—C18—H18120.4
C7—C6—C5120.48 (9)C19—C18—H18120.4
C6—C7—C8119.23 (9)O8—C19—C20123.40 (9)
C6—C7—H7A120.4O8—C19—C18114.27 (8)
C8—C7—H7A120.4C20—C19—C18122.33 (9)
O4—C8—C9123.04 (8)C21—C20—C19116.84 (8)
O4—C8—C7114.59 (8)C21—C20—H20121.6
C9—C8—C7122.37 (9)C19—C20—H20121.6
C10—C9—C8116.85 (8)O5—C21—C20115.79 (8)
C10—C9—H9121.6O5—C21—C16120.75 (8)
C8—C9—H9121.6C20—C21—C16123.46 (8)
O1—C10—C9115.31 (8)O8—C22—H22A109.5
O1—C10—C5121.16 (8)O8—C22—H22B109.5
C9—C10—C5123.53 (8)H22A—C22—H22B109.5
O4—C11—H11A109.5O8—C22—H22C109.5
O4—C11—H11B109.5H22A—C22—H22C109.5
H11A—C11—H11B109.5H22B—C22—H22C109.5
C10—O1—C2—C3−0.95 (13)C21—O5—C13—C140.18 (14)
C10—O1—C2—C1178.64 (7)C21—O5—C13—C12−179.19 (7)
O1—C2—C3—C41.16 (15)O5—C13—C14—C15−0.03 (15)
C1—C2—C3—C4−178.35 (9)C12—C13—C14—C15179.24 (9)
C2—C3—C4—O2178.74 (10)C13—C14—C15—O6−179.58 (9)
C2—C3—C4—C5−0.66 (14)C13—C14—C15—C16−0.25 (14)
O2—C4—C5—C10−179.40 (9)O6—C15—C16—C21179.72 (9)
C3—C4—C5—C100.00 (13)C14—C15—C16—C210.38 (13)
O2—C4—C5—C60.38 (15)O6—C15—C16—C17−1.11 (15)
C3—C4—C5—C6179.78 (8)C14—C15—C16—C17179.55 (8)
C10—C5—C6—O3−179.79 (8)C21—C16—C17—O7179.27 (8)
C4—C5—C6—O30.42 (14)C15—C16—C17—O70.08 (14)
C10—C5—C6—C70.16 (14)C21—C16—C17—C18−0.18 (14)
C4—C5—C6—C7−179.63 (8)C15—C16—C17—C18−179.37 (8)
O3—C6—C7—C8179.29 (9)O7—C17—C18—C19−178.73 (9)
C5—C6—C7—C8−0.66 (14)C16—C17—C18—C190.72 (14)
C11—O4—C8—C9−1.20 (13)C22—O8—C19—C205.00 (14)
C11—O4—C8—C7179.17 (8)C22—O8—C19—C18−174.86 (9)
C6—C7—C8—O4−179.82 (8)C17—C18—C19—O8178.59 (8)
C6—C7—C8—C90.55 (14)C17—C18—C19—C20−1.27 (14)
O4—C8—C9—C10−179.53 (8)O8—C19—C20—C21−178.65 (8)
C7—C8—C9—C100.08 (14)C18—C19—C20—C211.19 (14)
C2—O1—C10—C9−179.84 (8)C13—O5—C21—C20−179.66 (8)
C2—O1—C10—C50.26 (13)C13—O5—C21—C16−0.03 (13)
C8—C9—C10—O1179.48 (7)C19—C20—C21—O5178.99 (8)
C8—C9—C10—C5−0.61 (14)C19—C20—C21—C16−0.62 (14)
C6—C5—C10—O1−179.60 (8)C17—C16—C21—O5−179.46 (8)
C4—C5—C10—O10.19 (14)C15—C16—C21—O5−0.26 (14)
C6—C5—C10—C90.50 (14)C17—C16—C21—C200.13 (14)
C4—C5—C10—C9−179.71 (9)C15—C16—C21—C20179.34 (9)
D—H···AD—HH···AD···AD—H···A
O3—H3···O20.85 (1)1.83 (1)2.618 (1)154 (2)
O7—H7···O60.85 (1)1.79 (1)2.595 (1)156 (2)
C7—H7A···O8i0.952.483.4222 (12)173
C9—H9···O2ii0.952.353.2614 (12)160
C12—H12B···O2iii0.982.373.3326 (13)166
C18—H18···O4iv0.952.473.3904 (12)163
C20—H20···O6iii0.952.273.1995 (12)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O20.85 (1)1.83 (1)2.618 (1)154 (2)
O7—H7⋯O60.85 (1)1.79 (1)2.595 (1)156 (2)
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