Literature DB >> 21588197

Poly[tetra-μ(1,1)-azido-bis-(μ(2)-pyrimidine-2-carboxyl-ato)tricopper(II)].

Jiong-Peng Zhao1, Fu-Chen Liu.   

Abstract

In the title compound, [Cu(3)(C(5)H(3)N(2)O(2))(2)(N(3))(4)](n), one of the Cu(II) atoms lies on an inversion centre and is octa-hedrally coordinated by two bidentate chelating pyrimidine-2-carboxyl-ate ligands and two azide anions, each of which gives an N:N-bridge to the second inversion-related Cu(II) centre in the formula unit. The second Cu(II) atom is five-coordinated with a distorted square-pyramidal coordination sphere comprising a single bidentate chelating pyrimidine-2-carboxyl-ate anion and three azide N anions, two of which doubly bridge centrosymmetric Cu(II) centres, giving a two-dimensional network structure extending parallel to (010).

Entities:  

Year:  2010        PMID: 21588197      PMCID: PMC3007223          DOI: 10.1107/S1600536810027030

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Copper azide complexes have attracted much attention in recent years because the azide anions can mediate magnetic inter­actions effectively between the copper ions, see: Zhao et al. (2009 ▶). The structures of the complexes are dependant on the co-ligand and conditions employed in the synthesis, see: Zeng et al. (2009 ▶). For azide complexes with 2,2′-bipyrimidine or oxalate as co-ligands, see: Cortes et al. (1996 ▶); Escuer et al. (1994 ▶) and for an azide complex with a pyrimidine-2-carboxyl­ate ligand, see: Suarez-Varela et al. (2008 ▶).

Experimental

Crystal data

[Cu3(C5H3N2O2)2(N3)4] M = 604.96 Monoclinic, a = 7.4743 (15) Å b = 14.997 (3) Å c = 9.479 (4) Å β = 122.31 (2)° V = 898.0 (5) Å3 Z = 2 Mo Kα radiation μ = 3.59 mm−1 T = 293 K 0.20 × 0.18 × 0.18 mm

Data collection

Rigaku SCXmini CCD diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.625, T max = 1.000 7028 measured reflections 1572 independent reflections 1305 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.134 S = 1.24 1572 reflections 151 parameters H-atom parameters constrained Δρmax = 0.71 e Å−3 Δρmin = −0.46 e Å−3 Data collection: SCXmini Benchtop Crystallography System Software (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO (Rigaku, 1998 ▶); data reduction: PROCESS-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810027030/zs2045sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810027030/zs2045Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu3(C5H3N2O2)2(N3)4]F(000) = 594
Mr = 604.96Dx = 2.237 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7433 reflections
a = 7.4743 (15) Åθ = 3.2–27.5°
b = 14.997 (3) ŵ = 3.59 mm1
c = 9.479 (4) ÅT = 293 K
β = 122.31 (2)°Block, black
V = 898.0 (5) Å30.20 × 0.18 × 0.18 mm
Z = 2
Rigaku SCXmini CCD diffractometer1572 independent reflections
Radiation source: fine-focus sealed tube1305 reflections with I > 2σ(I)
graphiteRint = 0.061
ω scansθmax = 25.0°, θmin = 3.2°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −8→8
Tmin = 0.625, Tmax = 1.000k = −17→17
7028 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H-atom parameters constrained
S = 1.24w = 1/[σ2(Fo2) + (0.0543P)2 + 2.0516P] where P = (Fo2 + 2Fc2)/3
1572 reflections(Δ/σ)max < 0.001
151 parametersΔρmax = 0.71 e Å3
0 restraintsΔρmin = −0.46 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.64025 (11)−0.01316 (5)−0.29370 (10)0.0259 (3)
Cu20.500000.000000.000000.0221 (3)
O10.7728 (6)−0.0882 (3)0.0359 (5)0.0278 (12)
O21.1215 (6)−0.0703 (3)0.1528 (5)0.0234 (12)
N10.4612 (8)0.0444 (4)−0.2223 (7)0.0279 (17)
N20.4377 (9)0.1253 (4)−0.2455 (7)0.0344 (19)
N30.4134 (13)0.2001 (5)−0.2695 (10)0.063 (3)
N40.4241 (9)−0.0895 (4)−0.4673 (7)0.0365 (19)
N50.2454 (9)−0.0933 (4)−0.4977 (6)0.035 (2)
N60.0719 (11)−0.0987 (6)−0.5367 (8)0.064 (3)
N71.1181 (8)0.0896 (3)0.2648 (6)0.0245 (17)
N80.7462 (8)0.0827 (3)0.1309 (6)0.0224 (17)
C10.9407 (9)−0.0464 (4)0.1173 (7)0.0214 (17)
C20.9320 (9)0.0481 (4)0.1760 (7)0.0221 (17)
C30.7414 (11)0.1682 (4)0.1722 (9)0.033 (2)
C40.9286 (12)0.2167 (5)0.2647 (9)0.038 (3)
C51.1161 (11)0.1746 (4)0.3094 (8)0.032 (2)
H3A0.612500.195100.138800.0390*
H4A0.927200.275500.295300.0460*
H5A1.243100.205500.371300.0390*
U11U22U33U12U13U23
Cu10.0184 (4)0.0326 (5)0.0258 (5)−0.0030 (3)0.0112 (4)−0.0039 (3)
Cu20.0168 (6)0.0274 (6)0.0215 (6)−0.0014 (4)0.0099 (5)−0.0009 (4)
O10.026 (2)0.026 (2)0.030 (2)−0.0038 (19)0.014 (2)−0.0047 (19)
O20.018 (2)0.028 (2)0.023 (2)−0.0004 (17)0.0102 (18)−0.0010 (18)
N10.025 (3)0.031 (3)0.034 (3)−0.001 (2)0.020 (3)0.001 (3)
N20.029 (3)0.048 (4)0.035 (3)−0.001 (3)0.023 (3)−0.001 (3)
N30.091 (6)0.032 (4)0.092 (6)0.014 (4)0.066 (5)0.011 (4)
N40.026 (3)0.045 (4)0.035 (3)−0.003 (3)0.014 (3)−0.010 (3)
N50.035 (4)0.050 (4)0.018 (3)−0.012 (3)0.012 (3)−0.002 (3)
N60.034 (4)0.114 (7)0.040 (4)−0.025 (4)0.018 (3)−0.001 (4)
N70.021 (3)0.024 (3)0.026 (3)−0.005 (2)0.011 (2)−0.003 (2)
N80.021 (3)0.025 (3)0.022 (3)−0.001 (2)0.012 (2)−0.002 (2)
C10.021 (3)0.026 (3)0.016 (3)−0.001 (3)0.009 (3)0.000 (3)
C20.027 (3)0.020 (3)0.022 (3)0.000 (3)0.015 (3)0.002 (2)
C30.035 (4)0.029 (4)0.037 (4)0.007 (3)0.021 (3)0.002 (3)
C40.047 (5)0.025 (4)0.041 (4)0.000 (3)0.022 (4)−0.004 (3)
C50.030 (4)0.035 (4)0.026 (4)−0.011 (3)0.012 (3)−0.004 (3)
Cu1—N11.991 (7)N2—N31.140 (10)
Cu1—N41.946 (6)N4—N51.208 (10)
Cu1—N4i2.563 (6)N5—N61.146 (12)
Cu1—O2ii1.995 (5)N7—C21.334 (9)
Cu1—N7ii2.030 (6)N7—C51.346 (8)
Cu2—O12.298 (5)N8—C21.321 (10)
Cu2—N12.077 (6)N8—C31.347 (8)
Cu2—N82.006 (6)C1—C21.537 (9)
Cu2—O1iii2.298 (5)C3—C41.394 (12)
Cu2—N1iii2.077 (6)C4—C51.381 (13)
Cu2—N8iii2.006 (5)C3—H3A0.9300
O1—C11.236 (8)C4—H4A0.9300
O2—C11.258 (9)C5—H5A0.9300
N1—N21.229 (8)
N1—Cu1—N497.9 (3)Cu1—N1—N2115.2 (5)
N1—Cu1—N4i101.4 (2)Cu2—N1—N2115.3 (5)
O2ii—Cu1—N191.3 (2)N1—N2—N3178.9 (8)
N1—Cu1—N7ii155.5 (2)Cu1—N4—N5122.8 (5)
N4—Cu1—N4i85.8 (2)Cu1—N4—Cu1i94.2 (2)
O2ii—Cu1—N4167.4 (2)Cu1i—N4—N599.0 (4)
N4—Cu1—N7ii93.4 (3)N4—N5—N6175.6 (7)
O2ii—Cu1—N4i83.89 (19)C2—N7—C5117.2 (6)
N4i—Cu1—N7ii101.0 (2)Cu1ii—N7—C2112.0 (4)
O2ii—Cu1—N7ii81.5 (2)Cu1ii—N7—C5130.6 (5)
O1—Cu2—N188.1 (2)Cu2—N8—C2114.5 (4)
O1—Cu2—N879.4 (2)Cu2—N8—C3127.6 (6)
O1—Cu2—O1iii180.00C2—N8—C3117.8 (6)
O1—Cu2—N1iii91.9 (2)O1—C1—O2127.6 (6)
O1—Cu2—N8iii100.6 (2)O1—C1—C2117.9 (6)
N1—Cu2—N890.8 (2)O2—C1—C2114.4 (6)
O1iii—Cu2—N191.9 (2)N7—C2—N8125.6 (6)
N1—Cu2—N1iii180.00N7—C2—C1115.3 (6)
N1—Cu2—N8iii89.2 (2)N8—C2—C1119.1 (6)
O1iii—Cu2—N8100.6 (2)N8—C3—C4120.4 (8)
N1iii—Cu2—N889.2 (2)C3—C4—C5117.9 (7)
N8—Cu2—N8iii180.00N7—C5—C4121.1 (7)
O1iii—Cu2—N1iii88.1 (2)N8—C3—H3A120.00
O1iii—Cu2—N8iii79.4 (2)C4—C3—H3A120.00
N1iii—Cu2—N8iii90.8 (2)C3—C4—H4A121.00
Cu2—O1—C1109.0 (4)C5—C4—H4A121.00
Cu1ii—O2—C1116.6 (4)N7—C5—H5A119.00
Cu1—N1—Cu2116.8 (3)C4—C5—H5A119.00
O1—Cu1—N1—N2136.0 (5)N8—Cu2—N1—Cu184.3 (3)
N4—Cu1—N1—Cu2103.7 (3)N8—Cu2—N1—N2−55.7 (6)
N4—Cu1—N1—N2−116.3 (5)O1iii—Cu2—N1—Cu1−175.1 (3)
N4i—Cu1—N1—Cu2−169.0 (3)O1iii—Cu2—N1—N244.9 (6)
N4i—Cu1—N1—N2−28.9 (5)N8iii—Cu2—N1—Cu1−95.7 (3)
O2ii—Cu1—N1—Cu2−84.9 (3)N8iii—Cu2—N1—N2124.3 (6)
O2ii—Cu1—N1—N255.1 (5)O1—Cu2—N8—C2−2.2 (4)
N7ii—Cu1—N1—Cu2−12.9 (8)O1—Cu2—N8—C3175.8 (6)
N7ii—Cu1—N1—N2127.2 (6)N1—Cu2—N8—C2−90.1 (5)
O1—Cu1—N4—N572.4 (6)N1—Cu2—N8—C387.9 (6)
O1—Cu1—N4—Cu1i175.86 (15)O1iii—Cu2—N8—C2177.8 (4)
N1—Cu1—N4—N5−2.6 (6)O1iii—Cu2—N8—C3−4.3 (6)
N1—Cu1—N4—Cu1i100.9 (2)N1iii—Cu2—N8—C289.9 (5)
N4i—Cu1—N4—N5−103.5 (6)N1iii—Cu2—N8—C3−92.2 (6)
N4i—Cu1—N4—Cu1i0.0 (2)Cu1—O1—C1—O2−91.6 (6)
N7ii—Cu1—N4—N5155.7 (6)Cu1—O1—C1—C284.7 (5)
N7ii—Cu1—N4—Cu1i−100.8 (2)Cu2—O1—C1—O2−175.2 (5)
N1—Cu1—N4i—Cu1i−97.2 (3)Cu2—O1—C1—C21.2 (6)
N1—Cu1—N4i—N5i138.6 (4)Cu1ii—O2—C1—O1−178.1 (5)
N4—Cu1—N4i—Cu1i0.0 (3)Cu1ii—O2—C1—C25.5 (6)
N4—Cu1—N4i—N5i−124.2 (5)C5—N7—C2—N8−1.4 (9)
O1—Cu1—O2ii—C1ii87.9 (4)C5—N7—C2—C1175.8 (5)
N1—Cu1—O2ii—C1ii160.8 (4)Cu1ii—N7—C2—N8−176.8 (5)
O1—Cu1—N7ii—C2ii−84.5 (4)Cu1ii—N7—C2—C10.4 (6)
O1—Cu1—N7ii—C5ii90.1 (6)C2—N7—C5—C40.0 (10)
N1—Cu1—N7ii—C2ii−75.9 (7)Cu1ii—N7—C5—C4174.4 (5)
N1—Cu1—N7ii—C5ii98.7 (7)Cu2—N8—C2—N7−179.3 (5)
N4—Cu1—N7ii—C2ii166.6 (4)Cu2—N8—C2—C13.6 (7)
N4—Cu1—N7ii—C5ii−18.8 (6)C3—N8—C2—N72.6 (9)
N1—Cu2—O1—Cu1−2.98 (18)C3—N8—C2—C1−174.6 (6)
N1—Cu2—O1—C191.6 (4)Cu2—N8—C3—C4179.9 (5)
N8—Cu2—O1—Cu1−94.14 (17)C2—N8—C3—C4−2.2 (10)
N8—Cu2—O1—C10.4 (4)O1—C1—C2—N7179.3 (5)
N1iii—Cu2—O1—Cu1177.02 (18)O1—C1—C2—N8−3.3 (8)
N1iii—Cu2—O1—C1−88.4 (4)O2—C1—C2—N7−3.9 (8)
N8iii—Cu2—O1—Cu185.86 (17)O2—C1—C2—N8173.5 (5)
N8iii—Cu2—O1—C1−179.6 (4)N8—C3—C4—C51.0 (11)
O1—Cu2—N1—Cu14.9 (3)C3—C4—C5—N70.2 (11)
O1—Cu2—N1—N2−135.1 (6)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Anion influence on the structure and magnetic properties of a series of multidimensional pyrimidine-2-carboxylato-bridged copper(II) complexes.

Authors:  José Suárez-Varela; Antonio J Mota; Hakima Aouryaghal; Joan Cano; A Rodríguez-Diéguez; Dominique Luneau; Enrique Colacio
Journal:  Inorg Chem       Date:  2008-08-13       Impact factor: 5.165

3.  Azido-mediated systems showing different magnetic behaviors.

Authors:  Yong-Fei Zeng; Xin Hu; Fu-Chen Liu; Xian-He Bu
Journal:  Chem Soc Rev       Date:  2008-12-11       Impact factor: 54.564

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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