Literature DB >> 21588174

catena-Poly[[[bis-(thio-cyanato-κN)zinc(II)]-μ-1,2-bis-{[2-(2-pyrid-yl)-1H-imidazol-1-yl]meth-yl}benzene] 0.28-hydrate].

Fei Han1, Haochen Shi, Yunfeng Gao, Hongjun Ma.   

Abstract

The title one-dimensional coordination polymer, {n class="Chemical">[Zn(NCS)(2)(C(24)H(20)N(6))(2)]·0.28H(2)O}(n), was obtained by the reaction of Zn(OAc)(2)·2H(2)O, KSCN and 1,2-bis-{[2-(2-pyrid-yl)-1H-imid-azol-1-yl]meth-yl}benzene (hereafter L). The Zn(II) ion shows a distorted octa-hedral coordination geometry and is coordin-ated by two N atoms from two SCN(-) anions and four N atoms from two organic ligands. The L ligands act as bridging bis-chelating ligands with cis coordination modes at the Zn(II) ion. One-dimensional coordination polymers are arranged into layers by π-π stacking inter-actions between the imidazole rings of adjacent chains, with an inter-planar distance of 3.46 (1) Å and centroid-centroid distances of 3.8775 (16) Å. One of the thio-cyanate ligands is disordered over two positions with an occupancy factor of 0.564 (3) for the major component. The partially occupied water mol-ecule forms an O-H⋯S hydrogen bond with the disordered thio-cyanate group.

Entities:  

Year:  2010        PMID: 21588174      PMCID: PMC3007418          DOI: 10.1107/S1600536810027571

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For backgroud to the topologies, supra­molecular structures and applications of metal-organic frameworks (MOFs), see: Dybtsev et al. (2004 ▶); Evans & Lin (2002 ▶); Moulton & Zaworotko (2001 ▶). For coordination modes of organic ligands, see: Janiak (2003 ▶). For similar structures, see: Dai et al. (2002 ▶); Luan et al. (2006 ▶). For the synthesis of 1,2-bis­{[2-(2-pyrid­yl)-1H-imidazol-1-yl]meth­yl}benzene, see: Li et al. (2008 ▶).

Experimental

Crystal data

[Zn(NCS)2(C24H20N6)2]·0.28H2O M = 579.03 Monoclinic, a = 7.8780 (4) Å b = 13.1770 (7) Å c = 25.9620 (14) Å β = 98.462 (1)° V = 2665.7 (2) Å3 Z = 4 Mo Kα radiation μ = 1.11 mm−1 T = 293 K 0.26 × 0.22 × 0.21 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.750, T max = 0.792 13328 measured reflections 4707 independent reflections 3127 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.102 S = 1.04 4707 reflections 362 parameters 30 restraints H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.33 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810027571/gk2287sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810027571/gk2287Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(NCS)2(C24H20N6)2]·0.28H2OF(000) = 1187
Mr = 579.03Dx = 1.443 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71069 Å
Hall symbol: -P 2ybcCell parameters from 2199 reflections
a = 7.8780 (4) Åθ = 1.6–26.4°
b = 13.1770 (7) ŵ = 1.11 mm1
c = 25.9620 (14) ÅT = 293 K
β = 98.462 (1)°Block, colorless
V = 2665.7 (2) Å30.26 × 0.22 × 0.21 mm
Z = 4
Bruker APEX CCD area-detector diffractometer4707 independent reflections
Radiation source: fine-focus sealed tube3127 reflections with I > 2σ(I)
graphiteRint = 0.036
ω scansθmax = 25.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.750, Tmax = 0.792k = −13→15
13328 measured reflectionsl = −28→30
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0472P)2 + 0.0052P] where P = (Fo2 + 2Fc2)/3
4707 reflections(Δ/σ)max = 0.001
362 parametersΔρmax = 0.38 e Å3
30 restraintsΔρmin = −0.33 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.1405 (4)0.0988 (2)0.23131 (12)0.0627 (9)
H10.05600.05830.21280.075*
C20.1380 (4)0.1355 (2)0.27956 (12)0.0628 (9)
H20.05270.12530.30030.075*
C30.3735 (4)0.1861 (2)0.25115 (10)0.0498 (7)
C40.5346 (4)0.2347 (2)0.24331 (11)0.0488 (7)
C50.6518 (4)0.2810 (2)0.28088 (12)0.0652 (9)
H50.63600.28010.31570.078*
C60.7924 (5)0.3283 (3)0.26590 (14)0.0787 (10)
H60.87190.36070.29050.094*
C70.8146 (4)0.3274 (3)0.21460 (15)0.0797 (11)
H70.90590.36150.20340.096*
C80.6981 (4)0.2748 (3)0.18015 (13)0.0715 (10)
H80.71620.27100.14560.086*
C90.3326 (4)0.2402 (2)0.34290 (10)0.0562 (8)
H9A0.22870.25950.35640.067*
H9B0.39600.30180.33820.067*
C100.4402 (4)0.1734 (2)0.38252 (10)0.0493 (7)
C110.4785 (4)0.0736 (2)0.37134 (12)0.0633 (9)
H110.44020.04750.33840.076*
C120.4998 (3)0.2120 (2)0.43188 (10)0.0464 (7)
C130.5948 (4)0.1497 (2)0.46849 (11)0.0574 (8)
H130.63550.17510.50140.069*
C140.6294 (4)0.0511 (3)0.45663 (13)0.0699 (9)
H140.69210.01000.48160.084*
C150.5719 (4)0.0128 (3)0.40811 (14)0.0747 (10)
H150.5961−0.05390.40010.090*
C160.4598 (4)0.3198 (2)0.44434 (10)0.0514 (7)
H16A0.51260.36440.42150.062*
H16B0.33660.32970.43680.062*
C170.6633 (4)0.4061 (2)0.51368 (11)0.0594 (8)
H170.74190.42780.49260.071*
C180.6701 (4)0.4240 (2)0.56517 (12)0.0610 (8)
H180.75520.46110.58570.073*
C190.4434 (4)0.3341 (2)0.54193 (10)0.0460 (7)
C200.2902 (4)0.2752 (2)0.54843 (10)0.0480 (7)
C210.1991 (4)0.2117 (2)0.51218 (11)0.0554 (8)
H210.23080.20400.47930.066*
C220.0594 (4)0.1596 (3)0.52576 (13)0.0691 (9)
H22−0.00470.11730.50170.083*
C230.0159 (4)0.1703 (3)0.57424 (14)0.0728 (10)
H23−0.07740.13570.58390.087*
C240.1140 (4)0.2337 (3)0.60837 (13)0.0715 (10)
H240.08570.24040.64170.086*
N10.5617 (3)0.22928 (18)0.19344 (9)0.0557 (6)
N20.2857 (3)0.19105 (18)0.29238 (8)0.0531 (6)
N30.2880 (3)0.13082 (18)0.21386 (9)0.0556 (6)
N40.5181 (3)0.34985 (17)0.49856 (8)0.0490 (6)
N50.5331 (3)0.37948 (18)0.58233 (9)0.0525 (6)
N60.2472 (3)0.28627 (19)0.59660 (9)0.0566 (7)
N70.6024 (4)0.0045 (2)0.18550 (12)0.0833 (9)
C250.6692 (4)−0.0180 (2)0.22631 (14)0.0603 (8)
S20.75961 (13)−0.04934 (9)0.28408 (4)0.0927 (3)
N80.2453 (4)−0.0111 (2)0.11975 (10)0.0852 (10)
C260.1381 (15)−0.0639 (10)0.1031 (6)0.052 (3)0.56 (3)
S10.0107 (12)−0.1515 (10)0.0796 (4)0.1109 (18)0.56 (3)
C26'0.1698 (19)−0.0857 (8)0.1087 (8)0.042 (3)0.44 (3)
S1'0.0605 (18)−0.1874 (10)0.0912 (4)0.091 (3)0.44 (3)
Zn10.41177 (5)0.10351 (3)0.149130 (12)0.05821 (16)
O1W−0.0298 (16)0.1050 (10)0.3898 (4)0.154 (5)0.28
H1W−0.12260.07450.37820.231*0.28
H2W−0.04080.16420.37680.231*0.28
U11U22U33U12U13U23
C10.070 (2)0.072 (2)0.0484 (19)−0.0175 (18)0.0148 (17)−0.0006 (16)
C20.063 (2)0.080 (2)0.050 (2)−0.0060 (18)0.0228 (17)0.0030 (16)
C30.0625 (19)0.0526 (18)0.0363 (16)−0.0014 (15)0.0143 (15)−0.0020 (13)
C40.0609 (19)0.0455 (17)0.0416 (17)0.0010 (15)0.0127 (15)−0.0043 (13)
C50.072 (2)0.069 (2)0.055 (2)−0.0104 (19)0.0133 (18)−0.0107 (17)
C60.076 (2)0.085 (3)0.075 (3)−0.014 (2)0.010 (2)−0.024 (2)
C70.072 (2)0.087 (3)0.087 (3)−0.027 (2)0.034 (2)−0.018 (2)
C80.081 (2)0.077 (2)0.064 (2)−0.015 (2)0.037 (2)−0.0131 (18)
C90.077 (2)0.0581 (19)0.0361 (16)0.0103 (17)0.0170 (15)−0.0024 (14)
C100.0592 (18)0.0525 (19)0.0394 (17)0.0047 (15)0.0185 (14)0.0039 (13)
C110.083 (2)0.056 (2)0.0514 (19)0.0117 (18)0.0113 (17)−0.0073 (15)
C120.0553 (17)0.0495 (18)0.0379 (16)0.0036 (14)0.0185 (14)0.0064 (13)
C130.069 (2)0.058 (2)0.0458 (18)0.0074 (17)0.0093 (16)0.0041 (15)
C140.078 (2)0.062 (2)0.068 (2)0.0175 (19)0.0052 (19)0.0107 (18)
C150.094 (3)0.054 (2)0.077 (2)0.023 (2)0.013 (2)−0.0041 (19)
C160.073 (2)0.0531 (18)0.0303 (15)−0.0011 (16)0.0139 (14)0.0033 (13)
C170.075 (2)0.061 (2)0.0472 (19)−0.0101 (17)0.0248 (17)−0.0008 (15)
C180.078 (2)0.059 (2)0.0481 (19)−0.0122 (17)0.0143 (17)−0.0020 (15)
C190.0625 (19)0.0425 (17)0.0356 (16)0.0050 (15)0.0156 (15)0.0051 (13)
C200.0558 (18)0.0485 (17)0.0406 (17)0.0087 (15)0.0102 (14)0.0085 (13)
C210.0595 (19)0.063 (2)0.0448 (18)0.0008 (17)0.0104 (15)0.0038 (15)
C220.059 (2)0.078 (2)0.069 (2)−0.0022 (19)0.0041 (18)−0.0009 (19)
C230.063 (2)0.089 (3)0.071 (2)−0.008 (2)0.0235 (19)0.009 (2)
C240.074 (2)0.088 (3)0.057 (2)−0.002 (2)0.0279 (19)0.0067 (19)
N10.0656 (16)0.0576 (16)0.0482 (15)−0.0092 (13)0.0228 (13)−0.0068 (12)
N20.0680 (17)0.0611 (16)0.0325 (13)0.0014 (14)0.0155 (12)−0.0008 (11)
N30.0691 (16)0.0614 (16)0.0382 (14)−0.0151 (14)0.0142 (13)−0.0044 (12)
N40.0662 (16)0.0491 (14)0.0336 (13)−0.0013 (13)0.0140 (12)0.0002 (11)
N50.0698 (16)0.0537 (15)0.0357 (14)−0.0045 (13)0.0136 (13)0.0005 (11)
N60.0664 (17)0.0643 (17)0.0419 (14)0.0053 (14)0.0180 (13)0.0081 (12)
N70.124 (3)0.0640 (19)0.0637 (19)0.0083 (18)0.0209 (18)0.0063 (16)
C250.067 (2)0.0435 (18)0.075 (2)0.0036 (16)0.0286 (19)−0.0005 (17)
S20.0803 (7)0.1023 (8)0.0907 (8)0.0078 (6)−0.0037 (6)0.0145 (6)
N80.125 (3)0.077 (2)0.0556 (19)−0.029 (2)0.0210 (18)−0.0141 (15)
C260.049 (5)0.060 (5)0.046 (5)0.014 (4)0.006 (4)0.001 (4)
S10.065 (2)0.129 (4)0.137 (3)−0.031 (3)0.007 (2)−0.033 (3)
C26'0.038 (5)0.053 (5)0.034 (5)0.020 (5)0.006 (4)0.001 (4)
S1'0.072 (3)0.113 (4)0.089 (3)−0.031 (3)0.019 (2)−0.043 (2)
Zn10.0859 (3)0.0552 (2)0.0370 (2)−0.00799 (19)0.02056 (19)−0.00498 (16)
O1W0.159 (11)0.198 (14)0.117 (10)−0.065 (9)0.058 (8)−0.028 (8)
C1—C21.346 (4)C16—H16A0.9700
C1—N31.374 (4)C16—H16B0.9700
C1—H10.9300C17—C181.351 (4)
C2—N21.373 (4)C17—N41.371 (4)
C2—H20.9300C17—H170.9300
C3—N31.315 (3)C18—N51.360 (4)
C3—N21.359 (3)C18—H180.9300
C3—C41.463 (4)C19—N51.319 (3)
C4—N11.345 (3)C19—N41.361 (3)
C4—C51.382 (4)C19—C201.465 (4)
C5—C61.376 (4)C20—N61.351 (3)
C5—H50.9300C20—C211.379 (4)
C6—C71.369 (4)C21—C221.386 (4)
C6—H60.9300C21—H210.9300
C7—C81.372 (4)C22—C231.360 (4)
C7—H70.9300C22—H220.9300
C8—N11.321 (4)C23—C241.371 (4)
C8—H80.9300C23—H230.9300
C9—N21.461 (3)C24—N61.330 (4)
C9—C101.515 (4)C24—H240.9300
C9—H9A0.9700N1—Zn12.250 (2)
C9—H9B0.9700N3—Zn12.095 (2)
C10—C111.390 (4)N5—Zn1i2.112 (2)
C10—C121.394 (4)N6—Zn1i2.265 (2)
C11—C151.374 (4)N7—C251.151 (4)
C11—H110.9300N7—Zn12.105 (3)
C12—C131.389 (4)C25—S21.616 (4)
C12—C161.501 (4)N8—C261.130 (4)
C13—C141.371 (4)N8—Zn12.071 (3)
C13—H130.9300C26—S11.591 (4)
C14—C151.371 (4)C26'—S1'1.621 (4)
C14—H140.9300O1W—H1W0.8500
C15—H150.9300O1W—H2W0.8500
C16—N41.469 (3)
C2—C1—N3109.0 (3)C17—C18—H18125.3
C2—C1—H1125.5N5—C18—H18125.3
N3—C1—H1125.5N5—C19—N4110.0 (2)
C1—C2—N2106.8 (3)N5—C19—C20120.2 (2)
C1—C2—H2126.6N4—C19—C20129.8 (3)
N2—C2—H2126.6N6—C20—C21121.4 (3)
N3—C3—N2110.0 (3)N6—C20—C19111.8 (2)
N3—C3—C4120.1 (2)C21—C20—C19126.7 (3)
N2—C3—C4129.9 (3)C20—C21—C22118.7 (3)
N1—C4—C5121.3 (3)C20—C21—H21120.7
N1—C4—C3112.0 (2)C22—C21—H21120.7
C5—C4—C3126.8 (3)C23—C22—C21120.1 (3)
C6—C5—C4118.8 (3)C23—C22—H22119.9
C6—C5—H5120.6C21—C22—H22119.9
C4—C5—H5120.6C22—C23—C24117.8 (3)
C7—C6—C5119.7 (3)C22—C23—H23121.1
C7—C6—H6120.2C24—C23—H23121.1
C5—C6—H6120.2N6—C24—C23123.9 (3)
C6—C7—C8118.0 (3)N6—C24—H24118.0
C6—C7—H7121.0C23—C24—H24118.0
C8—C7—H7121.0C8—N1—C4118.5 (3)
N1—C8—C7123.5 (3)C8—N1—Zn1126.0 (2)
N1—C8—H8118.3C4—N1—Zn1112.71 (18)
C7—C8—H8118.3C3—N2—C2107.1 (2)
N2—C9—C10113.2 (2)C3—N2—C9129.6 (3)
N2—C9—H9A108.9C2—N2—C9123.2 (2)
C10—C9—H9A108.9C3—N3—C1107.1 (2)
N2—C9—H9B108.9C3—N3—Zn1115.93 (19)
C10—C9—H9B108.9C1—N3—Zn1136.7 (2)
H9A—C9—H9B107.7C19—N4—C17106.9 (2)
C11—C10—C12118.9 (3)C19—N4—C16129.7 (2)
C11—C10—C9121.7 (3)C17—N4—C16123.4 (2)
C12—C10—C9119.4 (3)C19—N5—C18107.1 (2)
C15—C11—C10121.1 (3)C19—N5—Zn1i116.53 (19)
C15—C11—H11119.4C18—N5—Zn1i134.4 (2)
C10—C11—H11119.4C24—N6—C20118.0 (3)
C13—C12—C10119.3 (3)C24—N6—Zn1i126.6 (2)
C13—C12—C16121.4 (3)C20—N6—Zn1i115.3 (2)
C10—C12—C16119.3 (2)C25—N7—Zn1140.6 (3)
C14—C13—C12120.7 (3)N7—C25—S2178.9 (3)
C14—C13—H13119.6C26—N8—Zn1170.9 (9)
C12—C13—H13119.6N8—C26—S1170.8 (12)
C15—C14—C13120.4 (3)N8—Zn1—N394.38 (10)
C15—C14—H14119.8N8—Zn1—N794.87 (13)
C13—C14—H14119.8N3—Zn1—N797.60 (11)
C14—C15—C11119.7 (3)N8—Zn1—N5ii96.53 (10)
C14—C15—H15120.2N3—Zn1—N5ii163.98 (9)
C11—C15—H15120.2N7—Zn1—N5ii93.14 (11)
N4—C16—C12114.5 (2)N8—Zn1—N1168.99 (10)
N4—C16—H16A108.6N3—Zn1—N174.61 (9)
C12—C16—H16A108.6N7—Zn1—N186.62 (11)
N4—C16—H16B108.6N5ii—Zn1—N194.28 (9)
C12—C16—H16B108.6N8—Zn1—N6ii88.30 (11)
H16A—C16—H16B107.6N3—Zn1—N6ii94.60 (9)
C18—C17—N4106.7 (3)N7—Zn1—N6ii167.12 (10)
C18—C17—H17126.6N5ii—Zn1—N6ii74.07 (9)
N4—C17—H17126.6N1—Zn1—N6ii92.65 (9)
C17—C18—N5109.3 (3)H1W—O1W—H2W105.1
D—H···AD—HH···AD···AD—H···A
O1W—H2W···S1iii0.852.683.30 (2)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H2W⋯S1i0.852.683.30 (2)132

Symmetry code: (i) .

  6 in total

1.  From molecules to crystal engineering: supramolecular isomerism and polymorphism in network solids.

Authors:  B Moulton; M J Zaworotko
Journal:  Chem Rev       Date:  2001-06       Impact factor: 60.622

2.  Crystal engineering of NLO materials based on metal--organic coordination networks.

Authors:  Owen R Evans; Wenbin Lin
Journal:  Acc Chem Res       Date:  2002-07       Impact factor: 22.384

3.  An investigation of the self-assembly of neutral, interlaced, triple-stranded molecular braids.

Authors:  Xin-Jun Luan; Xue-Hua Cai; Yao-Yu Wang; Dong-Sheng Li; Cui-Juan Wang; Ping Liu; Huai-Ming Hu; Qi-Zhen Shi; Shie-Ming Peng
Journal:  Chemistry       Date:  2006-08-16       Impact factor: 5.236

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Synthesis, structure, and fluorescence of the novel cadmium(II)-trimesate coordination polymers with different coordination architectures.

Authors:  Jing-Cao Dai; Xin-Tao Wu; Zhi-Yong Fu; Chuan-Peng Cui; Sheng-Min Hu; Wen-Xin Du; Li-Ming Wu; Han-Hui Zhang; Rui-Qing Sun
Journal:  Inorg Chem       Date:  2002-03-25       Impact factor: 5.165

6.  Microporous manganese formate: a simple metal-organic porous material with high framework stability and highly selective gas sorption properties.

Authors:  Danil N Dybtsev; Hyungphil Chun; Sun Hong Yoon; Dongwoo Kim; Kimoon Kim
Journal:  J Am Chem Soc       Date:  2004-01-14       Impact factor: 15.419

  6 in total

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