Literature DB >> 21588143

Poly[dimethyl-ammonium [aquadi-μ(2)-oxalato-dysprosate(III)] trihydrate].

Su-Fang Ye1, Hong Lin.   

Abstract

The title compound, {(C(2)H(8)N)[Dy(C(2)O(4))(2)(H(2)O)]·3H(2)O}(n), was obtained as an unexpected product under hydro-thermal conditions. The Dy(III) atom is chelated by four oxalate anions, two of which are situated on two different centres of inversion. The distorted tricapped trigonal-prismatic coordination sphere of the Dy(III) atom is completed by a water mol-ecule. The bridging mode of the anions results in the formation of a three-dimensional network with cavities where the ammonium cations and the uncoordinated water mol-ecules reside. The structure is stabilized by numerous N-H⋯O and O-H⋯O hydrogen-bonding inter-actions.

Entities:  

Year:  2010        PMID: 21588143      PMCID: PMC3007264          DOI: 10.1107/S1600536810026140

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For decomposition mechanisms of organic ligands resulting in the formation of oxalates, see: Ghosh et al. (2004 ▶); Zhong et al., (2008 ▶). For other DyIII oxalate compounds, see: Hansson (1973 ▶); Kahwa et al. (1984 ▶); Ollendorff et al. (1969 ▶). The structure of the isotypic EuIII compound was reported by Yang et al. (2005 ▶).

Experimental

Crystal data

(C2H8N)[Dy(C2O4)2(H2O)3H2O M = 456.70 Monoclinic, a = 9.6239 (2) Å b = 11.6030 (2) Å c = 14.3050 (2) Å β = 122.463 (1)° V = 1347.77 (4) Å3 Z = 4 Mo Kα radiation μ = 5.61 mm−1 T = 296 K 0.19 × 0.15 × 0.04 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.374, T max = 0.790 20173 measured reflections 3108 independent reflections 2810 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.019 wR(F 2) = 0.047 S = 1.06 3108 reflections 211 parameters 12 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.84 e Å−3 Δρmin = −0.91 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Crystal Impact, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810026140/wm2367sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810026140/wm2367Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C2H8N)[Dy(C2O4)2(H2O)]·3H2OF(000) = 884
Mr = 456.70Dx = 2.251 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9337 reflections
a = 9.6239 (2) Åθ = 2.4–27.6°
b = 11.6030 (2) ŵ = 5.61 mm1
c = 14.3050 (2) ÅT = 296 K
β = 122.463 (1)°Block, colourless
V = 1347.77 (4) Å30.19 × 0.15 × 0.04 mm
Z = 4
Bruker APEXII area-detector diffractometer3108 independent reflections
Radiation source: fine-focus sealed tube2810 reflections with I > 2σ(I)
graphiteRint = 0.032
ω scansθmax = 27.6°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −12→12
Tmin = 0.374, Tmax = 0.790k = −15→14
20173 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.019Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.047H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0236P)2 + 1.0326P] where P = (Fo2 + 2Fc2)/3
3108 reflections(Δ/σ)max = 0.001
211 parametersΔρmax = 0.84 e Å3
12 restraintsΔρmin = −0.91 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Dy10.117659 (15)−0.013113 (10)−0.167676 (10)0.01672 (5)
N10.4246 (4)−0.1300 (3)−0.3049 (3)0.0407 (7)
H1A0.393 (5)−0.098 (3)−0.263 (3)0.049*
H1B0.378 (5)−0.095 (3)−0.368 (3)0.049*
O10.2048 (2)−0.21224 (15)−0.15624 (17)0.0250 (4)
O1W0.1053 (3)−0.02065 (19)−0.34320 (18)0.0317 (5)
H1WA0.036 (4)−0.061 (2)−0.396 (2)0.038*
H1WB0.106 (4)0.0401 (18)−0.375 (2)0.038*
O2−0.1030 (2)−0.13712 (15)−0.29291 (17)0.0232 (4)
O2W0.5505 (4)−0.2809 (3)−0.0349 (3)0.0669 (9)
H2WA0.489 (5)−0.291 (5)−0.009 (3)0.080*
H2WB0.624 (4)−0.238 (4)0.016 (3)0.080*
O3−0.1939 (2)−0.31830 (15)−0.32907 (16)0.0219 (4)
O3W−0.1188 (4)−0.1547 (2)−0.5332 (3)0.0576 (8)
H3WA−0.090 (5)−0.222 (2)−0.529 (4)0.069*
H3WB−0.209 (3)−0.155 (3)−0.543 (4)0.069*
O40.1169 (2)−0.39375 (16)−0.20338 (18)0.0278 (5)
O4W0.6648 (5)−0.5050 (3)−0.0068 (3)0.0701 (11)
H4WA0.694 (6)−0.530 (4)0.056 (3)0.084*
H4WB0.596 (5)−0.456 (4)−0.020 (4)0.084*
O50.3400 (3)−0.01122 (16)0.02214 (18)0.0263 (5)
O60.0192 (3)−0.11779 (16)−0.06741 (17)0.0276 (4)
O70.0381 (3)0.11134 (17)−0.06433 (18)0.0300 (5)
O80.3894 (3)−0.01101 (15)−0.14319 (17)0.0226 (4)
C10.0965 (3)−0.2872 (2)−0.2069 (2)0.0197 (5)
C2−0.0829 (3)−0.2435 (2)−0.2832 (2)0.0180 (5)
C30.4856 (4)−0.0001 (2)0.0483 (2)0.0198 (6)
C4−0.0055 (3)−0.0664 (2)−0.0010 (2)0.0220 (6)
C50.3567 (6)−0.2468 (4)−0.3333 (4)0.0761 (15)
H5A0.2387−0.2431−0.37210.091*
H5B0.3984−0.2910−0.26670.091*
H5C0.3882−0.2827−0.37960.091*
C60.6030 (5)−0.1251 (5)−0.2451 (4)0.0710 (14)
H6A0.6384−0.0464−0.22790.085*
H6B0.6396−0.1572−0.29010.085*
H6C0.6490−0.1686−0.17770.085*
U11U22U33U12U13U23
Dy10.01578 (8)0.01427 (7)0.01843 (8)−0.00014 (4)0.00807 (6)−0.00013 (4)
N10.0347 (18)0.0526 (18)0.0363 (17)0.0048 (14)0.0200 (15)−0.0078 (14)
O10.0179 (11)0.0192 (9)0.0295 (11)−0.0011 (8)0.0073 (9)−0.0039 (8)
O1W0.0342 (14)0.0367 (12)0.0218 (11)−0.0059 (10)0.0133 (11)−0.0019 (9)
O20.0213 (11)0.0158 (9)0.0259 (10)0.0016 (7)0.0082 (9)0.0007 (8)
O2W0.053 (2)0.0513 (18)0.066 (2)0.0025 (14)0.0119 (17)−0.0131 (15)
O30.0172 (10)0.0179 (9)0.0272 (11)−0.0014 (7)0.0096 (9)−0.0029 (7)
O3W0.066 (2)0.0331 (13)0.0650 (19)0.0039 (13)0.0292 (19)0.0093 (13)
O40.0228 (11)0.0161 (9)0.0319 (11)0.0016 (8)0.0063 (9)−0.0012 (8)
O4W0.074 (3)0.068 (2)0.0376 (18)0.0164 (15)0.0098 (18)−0.0028 (14)
O50.0184 (11)0.0392 (11)0.0218 (11)−0.0021 (8)0.0111 (9)−0.0007 (8)
O60.0340 (12)0.0239 (10)0.0308 (12)−0.0039 (8)0.0213 (10)−0.0040 (8)
O70.0389 (13)0.0241 (10)0.0397 (13)0.0032 (9)0.0294 (11)0.0059 (9)
O80.0177 (11)0.0297 (10)0.0187 (10)−0.0005 (7)0.0085 (9)−0.0015 (7)
C10.0209 (15)0.0194 (12)0.0179 (13)0.0005 (10)0.0098 (12)0.0006 (10)
C20.0197 (15)0.0195 (12)0.0165 (13)−0.0014 (10)0.0108 (12)−0.0012 (10)
C30.0205 (15)0.0161 (11)0.0200 (14)0.0015 (10)0.0090 (12)0.0005 (9)
C40.0157 (14)0.0231 (14)0.0252 (15)−0.0009 (10)0.0098 (12)0.0000 (10)
C50.096 (4)0.059 (3)0.082 (4)−0.017 (3)0.054 (3)−0.020 (2)
C60.035 (2)0.121 (4)0.052 (3)0.007 (2)0.020 (2)−0.019 (3)
Dy1—O3i2.3846 (17)O3W—H3WA0.83 (3)
Dy1—O22.3883 (19)O3W—H3WB0.80 (4)
Dy1—O52.390 (2)O4—C11.249 (3)
Dy1—O62.427 (2)O4—Dy1ii2.4386 (19)
Dy1—O12.4335 (18)O4W—H4WA0.84 (3)
Dy1—O4i2.4386 (19)O4W—H4WB0.82 (4)
Dy1—O82.445 (2)O5—C31.248 (4)
Dy1—O1W2.451 (2)O6—C41.248 (3)
Dy1—O72.464 (2)O7—C4iii1.248 (3)
N1—C61.451 (5)O8—C3iv1.246 (4)
N1—C51.463 (6)C1—C21.551 (4)
N1—H1A0.89 (4)C3—O8iv1.246 (4)
N1—H1B0.87 (4)C3—C3iv1.549 (6)
O1—C11.248 (3)C4—O7iii1.248 (3)
O1W—H1WA0.84 (4)C4—C4iii1.544 (5)
O1W—H1WB0.84 (4)C5—H5A0.9600
O2—C21.245 (3)C5—H5B0.9600
O2W—H2WA0.86 (5)C5—H5C0.9600
O2W—H2WB0.85 (4)C6—H6A0.9600
O3—C21.254 (3)C6—H6B0.9600
O3—Dy1ii2.3846 (17)C6—H6C0.9600
O3i—Dy1—O2135.67 (6)C5—N1—H1B104 (3)
O3i—Dy1—O585.20 (6)H1A—N1—H1B110 (4)
O2—Dy1—O5138.66 (7)C1—O1—Dy1118.16 (17)
O3i—Dy1—O6135.05 (6)Dy1—O1W—H1WA121 (2)
O2—Dy1—O670.73 (7)Dy1—O1W—H1WB121 (2)
O5—Dy1—O674.25 (7)H1WA—O1W—H1WB103 (2)
O3i—Dy1—O1143.39 (7)C2—O2—Dy1119.42 (17)
O2—Dy1—O167.30 (6)H2WA—O2W—H2WB99 (2)
O5—Dy1—O182.32 (7)C2—O3—Dy1ii118.80 (17)
O6—Dy1—O173.44 (7)H3WA—O3W—H3WB107 (3)
O3i—Dy1—O4i67.45 (6)C1—O4—Dy1ii118.02 (17)
O2—Dy1—O4i71.67 (6)H4WA—O4W—H4WB105 (3)
O5—Dy1—O4i139.00 (7)C3—O5—Dy1121.19 (19)
O6—Dy1—O4i103.57 (7)C4—O6—Dy1120.35 (17)
O1—Dy1—O4i137.38 (6)C4iii—O7—Dy1119.20 (17)
O3i—Dy1—O871.14 (6)C3iv—O8—Dy1119.36 (19)
O2—Dy1—O8124.42 (7)O1—C1—O4127.0 (3)
O5—Dy1—O866.48 (7)O1—C1—C2116.6 (2)
O6—Dy1—O8130.33 (7)O4—C1—C2116.4 (2)
O1—Dy1—O872.31 (6)O2—C2—O3126.2 (3)
O4i—Dy1—O8125.97 (7)O2—C2—C1116.7 (2)
O3i—Dy1—O1W81.96 (7)O3—C2—C1117.1 (2)
O2—Dy1—O1W71.05 (7)O8iv—C3—O5127.6 (3)
O5—Dy1—O1W133.30 (8)O8iv—C3—C3iv116.1 (3)
O6—Dy1—O1W140.18 (7)O5—C3—C3iv116.3 (3)
O1—Dy1—O1W81.98 (7)O7iii—C4—O6126.7 (3)
O4i—Dy1—O1W74.28 (8)O7iii—C4—C4iii116.5 (3)
O8—Dy1—O1W66.87 (7)O6—C4—C4iii116.8 (3)
O3i—Dy1—O769.77 (6)N1—C5—H5A109.5
O2—Dy1—O7111.44 (7)N1—C5—H5B109.5
O5—Dy1—O771.94 (7)H5A—C5—H5B109.5
O6—Dy1—O765.99 (7)N1—C5—H5C109.5
O1—Dy1—O7136.30 (7)H5A—C5—H5C109.5
O4i—Dy1—O770.20 (7)H5B—C5—H5C109.5
O8—Dy1—O7124.13 (7)N1—C6—H6A109.5
O1W—Dy1—O7140.87 (7)N1—C6—H6B109.5
C6—N1—C5114.3 (4)H6A—C6—H6B109.5
C6—N1—H1A108 (2)N1—C6—H6C109.5
C5—N1—H1A108 (2)H6A—C6—H6C109.5
C6—N1—H1B112 (3)H6B—C6—H6C109.5
O3i—Dy1—O1—C1−146.82 (18)O3i—Dy1—O7—C4iii−163.0 (2)
O2—Dy1—O1—C1−9.33 (19)O2—Dy1—O7—C4iii64.6 (2)
O5—Dy1—O1—C1142.0 (2)O5—Dy1—O7—C4iii−71.4 (2)
O6—Dy1—O1—C166.3 (2)O6—Dy1—O7—C4iii8.9 (2)
O4i—Dy1—O1—C1−25.9 (2)O1—Dy1—O7—C4iii−14.4 (3)
O8—Dy1—O1—C1−150.3 (2)O4i—Dy1—O7—C4iii124.6 (2)
O1W—Dy1—O1—C1−82.1 (2)O8—Dy1—O7—C4iii−114.7 (2)
O7—Dy1—O1—C188.5 (2)O1W—Dy1—O7—C4iii150.63 (19)
O3i—Dy1—O2—C2156.75 (18)O3i—Dy1—O8—C3iv86.85 (17)
O5—Dy1—O2—C2−34.0 (2)O2—Dy1—O8—C3iv−140.12 (16)
O6—Dy1—O2—C2−67.6 (2)O5—Dy1—O8—C3iv−6.14 (16)
O1—Dy1—O2—C211.96 (19)O6—Dy1—O8—C3iv−46.9 (2)
O4i—Dy1—O2—C2−179.8 (2)O1—Dy1—O8—C3iv−95.32 (18)
O8—Dy1—O2—C258.7 (2)O4i—Dy1—O8—C3iv128.38 (17)
O1W—Dy1—O2—C2101.0 (2)O1W—Dy1—O8—C3iv176.00 (19)
O7—Dy1—O2—C2−120.7 (2)O7—Dy1—O8—C3iv39.15 (19)
O3i—Dy1—O5—C3−65.25 (18)Dy1—O1—C1—O4−173.8 (2)
O2—Dy1—O5—C3122.27 (18)Dy1—O1—C1—C26.6 (3)
O6—Dy1—O5—C3155.14 (19)Dy1ii—O4—C1—O1−171.9 (2)
O1—Dy1—O5—C380.26 (19)Dy1ii—O4—C1—C27.7 (3)
O4i—Dy1—O5—C3−112.15 (19)Dy1—O2—C2—O3166.6 (2)
O8—Dy1—O5—C36.26 (17)Dy1—O2—C2—C1−13.2 (3)
O1W—Dy1—O5—C39.0 (2)Dy1ii—O3—C2—O2165.2 (2)
O7—Dy1—O5—C3−135.52 (19)Dy1ii—O3—C2—C1−15.0 (3)
O3i—Dy1—O6—C41.9 (3)O1—C1—C2—O24.2 (4)
O2—Dy1—O6—C4−134.4 (2)O4—C1—C2—O2−175.4 (2)
O5—Dy1—O6—C468.0 (2)O1—C1—C2—O3−175.6 (2)
O1—Dy1—O6—C4154.5 (2)O4—C1—C2—O34.7 (4)
O4i—Dy1—O6—C4−69.7 (2)Dy1—O5—C3—O8iv174.11 (19)
O8—Dy1—O6—C4106.4 (2)Dy1—O5—C3—C3iv−5.9 (3)
O1W—Dy1—O6—C4−151.28 (19)Dy1—O6—C4—O7iii−171.5 (2)
O7—Dy1—O6—C4−8.9 (2)Dy1—O6—C4—C4iii8.4 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O80.89 (4)2.00 (4)2.866 (4)163 (4)
N1—H1A···O1W0.89 (4)2.52 (4)3.090 (4)122 (3)
O1W—H1WA···O3W0.84 (4)2.03 (2)2.857 (4)173 (3)
O4W—H4WB···O2W0.82 (4)2.06 (3)2.767 (4)144 (5)
N1—H1B···O4Wv0.87 (4)1.91 (4)2.759 (5)165 (4)
O1W—H1WB···O3Wvi0.84 (4)1.92 (2)2.744 (3)167 (3)
O2W—H2WB···O3vii0.85 (4)2.06 (2)2.876 (4)161 (5)
O3W—H3WA···O7ii0.85 (4)2.24 (3)2.959 (3)145 (4)
O3W—H3WA···O6viii0.83 (4)2.34 (2)3.110 (3)156 (4)
O3W—H3WB···O4Wix0.80 (5)2.42 (3)2.959 (5)125 (4)
O3W—H3WB···O2Wix0.80 (5)2.49 (2)3.256 (5)160 (4)
O4W—H4WA···O4x0.84 (4)2.10 (3)2.837 (4)147 (5)
Table 1

Selected bond lengths (Å)

Dy1—O3i2.3846 (17)
Dy1—O22.3883 (19)
Dy1—O52.390 (2)
Dy1—O62.427 (2)
Dy1—O12.4335 (18)
Dy1—O4i2.4386 (19)
Dy1—O82.445 (2)
Dy1—O1W2.451 (2)
Dy1—O72.464 (2)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O80.89 (4)2.00 (4)2.866 (4)163 (4)
N1—H1A⋯O1W0.89 (4)2.52 (4)3.090 (4)122 (3)
O1W—H1WA⋯O3W0.84 (4)2.03 (2)2.857 (4)173 (3)
O4W—H4WB⋯O2W0.82 (4)2.06 (3)2.767 (4)144 (5)
N1—H1B⋯O4Wii0.87 (4)1.91 (4)2.759 (5)165 (4)
O1W—H1WB⋯O3Wiii0.84 (4)1.92 (2)2.744 (3)167 (3)
O2W—H2WB⋯O3iv0.85 (4)2.06 (2)2.876 (4)161 (5)
O3W—H3WA⋯O7v0.85 (4)2.24 (3)2.959 (3)145 (4)
O3W—H3WA⋯O6vi0.83 (4)2.34 (2)3.110 (3)156 (4)
O3W—H3WB⋯O4Wvii0.80 (5)2.42 (3)2.959 (5)125 (4)
O3W—H3WB⋯O2Wvii0.80 (5)2.49 (2)3.256 (5)160 (4)
O4W—H4WA⋯O4viii0.84 (4)2.10 (3)2.837 (4)147 (5)

Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Reactivity of pyridine-2,4,6-tricarboxylic acid toward Zn(II) salts under different reaction conditions.

Authors:  Sujit K Ghosh; G Savitha; Parimal K Bharadwaj
Journal:  Inorg Chem       Date:  2004-09-06       Impact factor: 5.165

  2 in total
  3 in total

1.  Poly[dimethyl-ammonium [aquadi-μ(2)-oxalato-yttriate(III)] trihydrate].

Authors:  Yao-Kang Lv; Li-Hua Gan; Liang Xu; Hao-Wen Zheng; Cao Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-04

2.  Poly[diimidazole-μ(4)-oxalato-μ(2)-oxalato-dicopper(II)].

Authors:  Zhu-Nian Jin; Hong Lin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-07

3.  Poly[dimethyl-ammonium [aquadi-μ(2)-oxalato-samarate(III)] trihydrate].

Authors:  Yao-Kang Lv; Li-Hua Gan; Ming-Xian Liu; Wei Xiong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-04
  3 in total

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