| Literature DB >> 21588129 |
Hossein Eshtiagh-Hosseini, Hossein Aghabozorg, Masoud Mirzaei.
Abstract
The crystal structure of the title compound, {(C(13)H(10)N)(2)[Zn(C(6)H(2)N(2)O(4))(2)]}(n), consists of polymeric Zn complex anions and discrete acridinium cations. The Zn cation, located on an inversion center, is N,O-chelated by two pyrazine-2,3-dicarboxyl-ate (pyzdc) anions in the basal plane, and is further coordinated by two carboxyl-ate O atoms from adjacent pyzdc anions in the axial directions with a longer Zn-O bond distance, forming a distorted ZnN(2)O(4) coordination geometry. The pyzdc anions bridge the Zn cations, forming polymeric chains running along the crystallographic b axis. The acridinium cations are linked to the complex chains via N-H⋯O and C-H⋯O hydrogen bonding. Significant π-π stacking between parallel acridinium ring systems is observed in the crystal structure, face-to-face distances being 3.311 (3) and 3.267 (4) Å.Entities:
Year: 2010 PMID: 21588129 PMCID: PMC3007445 DOI: 10.1107/S1600536810025195
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (C13H10N)2[Zn(C6H2N2O4)2] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 600 reflections |
| θ = 2.0–24.0° | |
| µ = 0.88 mm−1 | |
| β = 111.013 (2)° | Prism, red |
| 0.27 × 0.15 × 0.13 mm | |
| Bruker SMART 1000 CCD area-detector diffractometer | 2720 independent reflections |
| Radiation source: fine-focus sealed tube | 2292 reflections with |
| graphite | |
| ω scans | θmax = 25.2°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 15968 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2720 reflections | (Δ/σ)max = 0.001 |
| 244 parameters | Δρmax = 0.76 e Å−3 |
| 1 restraint | Δρmin = −0.47 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Zn1 | 1.0000 | 1.0000 | 0.5000 | 0.02299 (17) | |
| N1 | 0.97579 (16) | 0.7741 (3) | 0.41650 (12) | 0.0181 (4) | |
| N2 | 0.92414 (17) | 0.4493 (3) | 0.31697 (13) | 0.0235 (5) | |
| N3 | 0.56207 (16) | 0.2835 (3) | 0.40993 (12) | 0.0188 (4) | |
| O1 | 0.90033 (14) | 0.8249 (3) | 0.53444 (11) | 0.0225 (4) | |
| O2 | 0.81853 (16) | 0.5307 (3) | 0.51045 (12) | 0.0275 (5) | |
| O3 | 0.71207 (14) | 0.3430 (3) | 0.34784 (11) | 0.0231 (4) | |
| O4 | 0.84996 (14) | 0.1517 (3) | 0.41985 (10) | 0.0219 (4) | |
| C1 | 0.87279 (19) | 0.6642 (4) | 0.49636 (15) | 0.0183 (5) | |
| C2 | 0.91244 (18) | 0.6323 (4) | 0.42725 (14) | 0.0166 (5) | |
| C3 | 1.0143 (2) | 0.7552 (4) | 0.35783 (15) | 0.0213 (5) | |
| H3 | 1.0591 | 0.8517 | 0.3499 | 0.026* | |
| C4 | 0.9879 (2) | 0.5930 (4) | 0.30892 (15) | 0.0234 (6) | |
| H4 | 1.0158 | 0.5833 | 0.2684 | 0.028* | |
| C5 | 0.88694 (19) | 0.4691 (4) | 0.37672 (15) | 0.0174 (5) | |
| C6 | 0.8114 (2) | 0.3068 (4) | 0.38376 (15) | 0.0197 (5) | |
| C7 | 0.4615 (2) | 0.3287 (3) | 0.35817 (15) | 0.0173 (5) | |
| C8 | 0.4441 (2) | 0.3677 (4) | 0.27753 (15) | 0.0216 (5) | |
| H8 | 0.5016 | 0.3642 | 0.2593 | 0.026* | |
| C9 | 0.3419 (2) | 0.4107 (4) | 0.22648 (16) | 0.0233 (6) | |
| H9 | 0.3300 | 0.4348 | 0.1731 | 0.028* | |
| C10 | 0.2537 (2) | 0.4193 (4) | 0.25332 (15) | 0.0233 (6) | |
| H10 | 0.1850 | 0.4504 | 0.2176 | 0.028* | |
| C11 | 0.2682 (2) | 0.3826 (4) | 0.33062 (16) | 0.0229 (6) | |
| H11 | 0.2095 | 0.3882 | 0.3475 | 0.027* | |
| C12 | 0.3732 (2) | 0.3354 (4) | 0.38588 (15) | 0.0187 (5) | |
| C13 | 0.3932 (2) | 0.2948 (3) | 0.46547 (15) | 0.0183 (5) | |
| H13 | 0.3366 | 0.3014 | 0.4846 | 0.022* | |
| C14 | 0.4961 (2) | 0.2445 (4) | 0.51706 (15) | 0.0183 (5) | |
| C15 | 0.5195 (2) | 0.1983 (4) | 0.59890 (15) | 0.0219 (6) | |
| H15 | 0.4644 | 0.2036 | 0.6196 | 0.026* | |
| C16 | 0.6211 (2) | 0.1467 (4) | 0.64685 (16) | 0.0239 (6) | |
| H16 | 0.6358 | 0.1182 | 0.7003 | 0.029* | |
| C17 | 0.7049 (2) | 0.1364 (4) | 0.61494 (16) | 0.0237 (6) | |
| H17 | 0.7738 | 0.0977 | 0.6480 | 0.028* | |
| C18 | 0.6877 (2) | 0.1814 (4) | 0.53774 (15) | 0.0210 (5) | |
| H18 | 0.7441 | 0.1759 | 0.5184 | 0.025* | |
| C19 | 0.5823 (2) | 0.2368 (3) | 0.48739 (14) | 0.0180 (5) | |
| H3N | 0.6133 (15) | 0.292 (4) | 0.3912 (15) | 0.022* |
| Zn1 | 0.0244 (3) | 0.0228 (3) | 0.0256 (3) | −0.00764 (17) | 0.0137 (2) | −0.00581 (17) |
| N1 | 0.0126 (10) | 0.0220 (11) | 0.0196 (10) | 0.0012 (8) | 0.0058 (8) | 0.0009 (9) |
| N2 | 0.0187 (11) | 0.0312 (12) | 0.0221 (11) | −0.0029 (9) | 0.0093 (9) | −0.0022 (9) |
| N3 | 0.0152 (11) | 0.0215 (11) | 0.0217 (11) | −0.0001 (8) | 0.0090 (9) | 0.0011 (9) |
| O1 | 0.0224 (9) | 0.0225 (9) | 0.0252 (10) | −0.0031 (7) | 0.0118 (8) | −0.0029 (7) |
| O2 | 0.0303 (11) | 0.0281 (10) | 0.0318 (11) | −0.0089 (8) | 0.0205 (9) | −0.0043 (8) |
| O3 | 0.0149 (9) | 0.0282 (10) | 0.0251 (10) | −0.0018 (7) | 0.0058 (8) | 0.0009 (8) |
| O4 | 0.0209 (9) | 0.0198 (9) | 0.0234 (9) | −0.0017 (7) | 0.0059 (8) | −0.0002 (7) |
| C1 | 0.0142 (12) | 0.0211 (13) | 0.0193 (13) | 0.0010 (10) | 0.0058 (10) | 0.0012 (10) |
| C2 | 0.0120 (11) | 0.0199 (12) | 0.0177 (12) | 0.0017 (9) | 0.0051 (10) | 0.0034 (10) |
| C3 | 0.0131 (12) | 0.0285 (13) | 0.0226 (13) | −0.0016 (10) | 0.0067 (10) | 0.0028 (11) |
| C4 | 0.0181 (13) | 0.0320 (15) | 0.0226 (13) | 0.0014 (11) | 0.0102 (11) | −0.0014 (11) |
| C5 | 0.0109 (11) | 0.0223 (12) | 0.0177 (12) | 0.0004 (9) | 0.0035 (10) | 0.0003 (10) |
| C6 | 0.0164 (12) | 0.0248 (13) | 0.0182 (12) | −0.0031 (10) | 0.0065 (10) | −0.0050 (10) |
| C7 | 0.0161 (12) | 0.0150 (11) | 0.0207 (13) | −0.0002 (9) | 0.0064 (10) | −0.0015 (9) |
| C8 | 0.0201 (13) | 0.0250 (13) | 0.0226 (13) | 0.0016 (10) | 0.0110 (11) | 0.0003 (11) |
| C9 | 0.0267 (14) | 0.0232 (13) | 0.0186 (13) | 0.0004 (11) | 0.0066 (11) | −0.0013 (10) |
| C10 | 0.0156 (13) | 0.0259 (13) | 0.0233 (14) | 0.0011 (10) | 0.0009 (11) | 0.0021 (11) |
| C11 | 0.0149 (12) | 0.0256 (13) | 0.0284 (14) | −0.0010 (10) | 0.0081 (11) | 0.0008 (11) |
| C12 | 0.0165 (12) | 0.0188 (12) | 0.0224 (13) | −0.0008 (9) | 0.0088 (11) | −0.0016 (10) |
| C13 | 0.0165 (12) | 0.0187 (12) | 0.0231 (13) | −0.0027 (10) | 0.0112 (10) | −0.0028 (10) |
| C14 | 0.0177 (12) | 0.0158 (12) | 0.0223 (13) | −0.0035 (9) | 0.0083 (10) | −0.0022 (10) |
| C15 | 0.0233 (13) | 0.0232 (13) | 0.0231 (13) | −0.0040 (11) | 0.0131 (11) | −0.0009 (10) |
| C16 | 0.0250 (14) | 0.0257 (13) | 0.0203 (13) | −0.0065 (11) | 0.0073 (11) | 0.0017 (10) |
| C17 | 0.0164 (13) | 0.0265 (13) | 0.0247 (14) | −0.0015 (10) | 0.0032 (11) | 0.0050 (11) |
| C18 | 0.0152 (12) | 0.0232 (13) | 0.0252 (14) | −0.0020 (10) | 0.0080 (11) | 0.0010 (10) |
| C19 | 0.0194 (13) | 0.0163 (11) | 0.0199 (12) | −0.0032 (10) | 0.0090 (10) | 0.0000 (10) |
| Zn1—O1 | 2.0326 (17) | C7—C8 | 1.410 (4) |
| Zn1—O1i | 2.0326 (17) | C7—C12 | 1.425 (3) |
| Zn1—N1i | 2.093 (2) | C8—C9 | 1.366 (4) |
| Zn1—N1 | 2.093 (2) | C8—H8 | 0.9300 |
| Zn1—O4ii | 2.2435 (17) | C9—C10 | 1.414 (4) |
| Zn1—O4iii | 2.2435 (17) | C9—H9 | 0.9300 |
| N1—C3 | 1.332 (3) | C10—C11 | 1.357 (4) |
| N1—C2 | 1.338 (3) | C10—H10 | 0.9300 |
| N2—C4 | 1.333 (4) | C11—C12 | 1.425 (4) |
| N2—C5 | 1.340 (3) | C11—H11 | 0.9300 |
| N3—C7 | 1.358 (3) | C12—C13 | 1.387 (4) |
| N3—C19 | 1.359 (3) | C13—C14 | 1.388 (4) |
| N3—H3N | 0.86 (2) | C13—H13 | 0.9300 |
| O1—C1 | 1.273 (3) | C14—C19 | 1.422 (3) |
| O2—C1 | 1.240 (3) | C14—C15 | 1.427 (4) |
| O3—C6 | 1.263 (3) | C15—C16 | 1.357 (4) |
| O4—C6 | 1.249 (3) | C15—H15 | 0.9300 |
| C1—C2 | 1.528 (3) | C16—C17 | 1.422 (4) |
| C2—C5 | 1.399 (3) | C16—H16 | 0.9300 |
| C3—C4 | 1.377 (4) | C17—C18 | 1.359 (4) |
| C3—H3 | 0.9300 | C17—H17 | 0.9300 |
| C4—H4 | 0.9300 | C18—C19 | 1.414 (4) |
| C5—C6 | 1.526 (3) | C18—H18 | 0.9300 |
| O1—Zn1—O1i | 180.0 | O3—C6—C5 | 114.1 (2) |
| O1—Zn1—N1i | 99.32 (7) | N3—C7—C8 | 120.4 (2) |
| O1i—Zn1—N1i | 80.68 (7) | N3—C7—C12 | 119.5 (2) |
| O1—Zn1—N1 | 80.68 (7) | C8—C7—C12 | 120.1 (2) |
| O1i—Zn1—N1 | 99.32 (7) | C9—C8—C7 | 119.3 (2) |
| N1i—Zn1—N1 | 180.0 | C9—C8—H8 | 120.4 |
| O1—Zn1—O4ii | 86.88 (7) | C7—C8—H8 | 120.4 |
| O1i—Zn1—O4ii | 93.12 (7) | C8—C9—C10 | 121.2 (2) |
| N1i—Zn1—O4ii | 89.71 (7) | C8—C9—H9 | 119.4 |
| N1—Zn1—O4ii | 90.29 (7) | C10—C9—H9 | 119.4 |
| O1—Zn1—O4iii | 93.12 (7) | C11—C10—C9 | 120.8 (2) |
| O1i—Zn1—O4iii | 86.88 (7) | C11—C10—H10 | 119.6 |
| N1i—Zn1—O4iii | 90.29 (7) | C9—C10—H10 | 119.6 |
| N1—Zn1—O4iii | 89.71 (7) | C10—C11—C12 | 120.1 (2) |
| O4ii—Zn1—O4iii | 180.000 (1) | C10—C11—H11 | 120.0 |
| C3—N1—C2 | 118.8 (2) | C12—C11—H11 | 120.0 |
| C3—N1—Zn1 | 129.49 (17) | C13—C12—C11 | 122.9 (2) |
| C2—N1—Zn1 | 111.71 (16) | C13—C12—C7 | 118.5 (2) |
| C4—N2—C5 | 116.2 (2) | C11—C12—C7 | 118.6 (2) |
| C7—N3—C19 | 122.7 (2) | C12—C13—C14 | 121.2 (2) |
| C7—N3—H3N | 115.6 (19) | C12—C13—H13 | 119.4 |
| C19—N3—H3N | 121.6 (19) | C14—C13—H13 | 119.4 |
| C1—O1—Zn1 | 115.63 (15) | C13—C14—C19 | 119.0 (2) |
| C6—O4—Zn1iv | 145.70 (16) | C13—C14—C15 | 122.8 (2) |
| O2—C1—O1 | 126.6 (2) | C19—C14—C15 | 118.2 (2) |
| O2—C1—C2 | 117.0 (2) | C16—C15—C14 | 120.8 (2) |
| O1—C1—C2 | 116.4 (2) | C16—C15—H15 | 119.6 |
| N1—C2—C5 | 119.9 (2) | C14—C15—H15 | 119.6 |
| N1—C2—C1 | 115.5 (2) | C15—C16—C17 | 119.6 (2) |
| C5—C2—C1 | 124.7 (2) | C15—C16—H16 | 120.2 |
| N1—C3—C4 | 120.1 (2) | C17—C16—H16 | 120.2 |
| N1—C3—H3 | 119.9 | C18—C17—C16 | 122.1 (2) |
| C4—C3—H3 | 119.9 | C18—C17—H17 | 118.9 |
| N2—C4—C3 | 123.1 (2) | C16—C17—H17 | 118.9 |
| N2—C4—H4 | 118.5 | C17—C18—C19 | 118.7 (2) |
| C3—C4—H4 | 118.5 | C17—C18—H18 | 120.6 |
| N2—C5—C2 | 121.9 (2) | C19—C18—H18 | 120.6 |
| N2—C5—C6 | 115.7 (2) | N3—C19—C18 | 120.4 (2) |
| C2—C5—C6 | 122.3 (2) | N3—C19—C14 | 119.1 (2) |
| O4—C6—O3 | 126.0 (2) | C18—C19—C14 | 120.5 (2) |
| O4—C6—C5 | 119.9 (2) | ||
| O1—Zn1—N1—C3 | 179.3 (2) | N2—C5—C6—O4 | 83.9 (3) |
| O1i—Zn1—N1—C3 | −0.7 (2) | C2—C5—C6—O4 | −98.6 (3) |
| O4ii—Zn1—N1—C3 | 92.5 (2) | N2—C5—C6—O3 | −93.2 (3) |
| O4iii—Zn1—N1—C3 | −87.5 (2) | C2—C5—C6—O3 | 84.3 (3) |
| O1—Zn1—N1—C2 | −1.26 (16) | C19—N3—C7—C8 | −177.2 (2) |
| O1i—Zn1—N1—C2 | 178.74 (16) | C19—N3—C7—C12 | 2.4 (4) |
| O4ii—Zn1—N1—C2 | −88.05 (16) | N3—C7—C8—C9 | 179.3 (2) |
| O4iii—Zn1—N1—C2 | 91.95 (16) | C12—C7—C8—C9 | −0.4 (4) |
| N1i—Zn1—O1—C1 | −177.15 (17) | C7—C8—C9—C10 | 0.8 (4) |
| N1—Zn1—O1—C1 | 2.85 (17) | C8—C9—C10—C11 | −0.8 (4) |
| O4ii—Zn1—O1—C1 | 93.66 (17) | C9—C10—C11—C12 | 0.2 (4) |
| O4iii—Zn1—O1—C1 | −86.34 (17) | C10—C11—C12—C13 | −179.4 (2) |
| Zn1—O1—C1—O2 | 175.2 (2) | C10—C11—C12—C7 | 0.2 (4) |
| Zn1—O1—C1—C2 | −3.8 (3) | N3—C7—C12—C13 | −0.1 (3) |
| C3—N1—C2—C5 | −0.7 (3) | C8—C7—C12—C13 | 179.5 (2) |
| Zn1—N1—C2—C5 | 179.80 (17) | N3—C7—C12—C11 | −179.8 (2) |
| C3—N1—C2—C1 | 179.3 (2) | C8—C7—C12—C11 | −0.2 (3) |
| Zn1—N1—C2—C1 | −0.2 (2) | C11—C12—C13—C14 | 178.3 (2) |
| O2—C1—C2—N1 | −176.4 (2) | C7—C12—C13—C14 | −1.4 (4) |
| O1—C1—C2—N1 | 2.7 (3) | C12—C13—C14—C19 | 0.7 (4) |
| O2—C1—C2—C5 | 3.6 (4) | C12—C13—C14—C15 | −178.8 (2) |
| O1—C1—C2—C5 | −177.4 (2) | C13—C14—C15—C16 | 178.9 (2) |
| C2—N1—C3—C4 | 0.7 (4) | C19—C14—C15—C16 | −0.6 (4) |
| Zn1—N1—C3—C4 | −179.85 (18) | C14—C15—C16—C17 | −0.7 (4) |
| C5—N2—C4—C3 | −0.7 (4) | C15—C16—C17—C18 | 1.6 (4) |
| N1—C3—C4—N2 | 0.0 (4) | C16—C17—C18—C19 | −1.2 (4) |
| C4—N2—C5—C2 | 0.7 (4) | C7—N3—C19—C18 | 176.9 (2) |
| C4—N2—C5—C6 | 178.2 (2) | C7—N3—C19—C14 | −3.1 (4) |
| N1—C2—C5—N2 | −0.1 (4) | C17—C18—C19—N3 | 179.8 (2) |
| C1—C2—C5—N2 | 179.9 (2) | C17—C18—C19—C14 | −0.2 (4) |
| N1—C2—C5—C6 | −177.4 (2) | C13—C14—C19—N3 | 1.6 (3) |
| C1—C2—C5—C6 | 2.6 (4) | C15—C14—C19—N3 | −178.9 (2) |
| Zn1iv—O4—C6—O3 | −171.95 (18) | C13—C14—C19—C18 | −178.4 (2) |
| Zn1iv—O4—C6—C5 | 11.3 (4) | C15—C14—C19—C18 | 1.1 (3) |
| H··· | ||||
| N3—H3N···O3 | 0.86 (2) | 1.78 (2) | 2.634 (3) | 172 (3) |
| C13—H13···O2v | 0.93 | 2.38 | 3.211 (4) | 149 |
| C16—H16···O3vi | 0.93 | 2.49 | 3.377 (3) | 159 |
Selected bond lengths (Å)
| Zn1—O1 | 2.0326 (17) |
| Zn1—N1 | 2.093 (2) |
| Zn1—O4i | 2.2435 (17) |
Symmetry code: (i) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.86 (2) | 1.78 (2) | 2.634 (3) | 172 (3) |
| C13—H13⋯O2ii | 0.93 | 2.38 | 3.211 (4) | 149 |
| C16—H16⋯O3iii | 0.93 | 2.49 | 3.377 (3) | 159 |
Symmetry codes: (ii) ; (iii) .