Literature DB >> 21588129

catena-Poly[diacridinium [zinc(II)-di-μ-pyrazine-2,3-dicarboxyl-ato-κN,O:O;O:N,O]].

Hossein Eshtiagh-Hosseini, Hossein Aghabozorg, Masoud Mirzaei.   

Abstract

The crystal structure of the title compound, {(C(13)H(10)N)(2)[Zn(C(6)H(2)N(2)O(4))(2)]}(n), consists of polymeric Zn complex anions and discrete acridinium cations. The Zn cation, located on an inversion center, is N,O-chelated by two pyrazine-2,3-dicarboxyl-ate (pyzdc) anions in the basal plane, and is further coordinated by two carboxyl-ate O atoms from adjacent pyzdc anions in the axial directions with a longer Zn-O bond distance, forming a distorted ZnN(2)O(4) coordination geometry. The pyzdc anions bridge the Zn cations, forming polymeric chains running along the crystallographic b axis. The acridinium cations are linked to the complex chains via N-H⋯O and C-H⋯O hydrogen bonding. Significant π-π stacking between parallel acridinium ring systems is observed in the crystal structure, face-to-face distances being 3.311 (3) and 3.267 (4) Å.

Entities:  

Year:  2010        PMID: 21588129      PMCID: PMC3007445          DOI: 10.1107/S1600536810025195

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of a related Co(II) complex with pyzdc ligands, see: Aghabozorg et al. (2010b ▶). For the proton transfer of the carboxyl group, see: Aghabozorg et al. (2010a ▶).

Experimental

Crystal data

(C13H10N)2[Zn(C6H2N2O4)2] M = 758.00 Monoclinic, a = 13.2256 (12) Å b = 6.8141 (6) Å c = 17.9889 (16) Å β = 111.013 (2)° V = 1513.4 (2) Å3 Z = 2 Mo Kα radiation μ = 0.88 mm−1 T = 120 K 0.27 × 0.15 × 0.13 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick 1998 ▶) T min = 0.845, T max = 0.891 15968 measured reflections 2720 independent reflections 2292 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.115 S = 1.14 2720 reflections 244 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.76 e Å−3 Δρmin = −0.47 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810025195/xu2784sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025195/xu2784Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C13H10N)2[Zn(C6H2N2O4)2]F(000) = 776
Mr = 758.00Dx = 1.663 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 600 reflections
a = 13.2256 (12) Åθ = 2.0–24.0°
b = 6.8141 (6) ŵ = 0.88 mm1
c = 17.9889 (16) ÅT = 120 K
β = 111.013 (2)°Prism, red
V = 1513.4 (2) Å30.27 × 0.15 × 0.13 mm
Z = 2
Bruker SMART 1000 CCD area-detector diffractometer2720 independent reflections
Radiation source: fine-focus sealed tube2292 reflections with I > 2σ(I)
graphiteRint = 0.032
ω scansθmax = 25.2°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick 1998)h = −15→15
Tmin = 0.845, Tmax = 0.891k = −8→8
15968 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H atoms treated by a mixture of independent and constrained refinement
S = 1.14w = 1/[σ2(Fo2) + (0.0644P)2 + 1.454P] where P = (Fo2 + 2Fc2)/3
2720 reflections(Δ/σ)max = 0.001
244 parametersΔρmax = 0.76 e Å3
1 restraintΔρmin = −0.47 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn11.00001.00000.50000.02299 (17)
N10.97579 (16)0.7741 (3)0.41650 (12)0.0181 (4)
N20.92414 (17)0.4493 (3)0.31697 (13)0.0235 (5)
N30.56207 (16)0.2835 (3)0.40993 (12)0.0188 (4)
O10.90033 (14)0.8249 (3)0.53444 (11)0.0225 (4)
O20.81853 (16)0.5307 (3)0.51045 (12)0.0275 (5)
O30.71207 (14)0.3430 (3)0.34784 (11)0.0231 (4)
O40.84996 (14)0.1517 (3)0.41985 (10)0.0219 (4)
C10.87279 (19)0.6642 (4)0.49636 (15)0.0183 (5)
C20.91244 (18)0.6323 (4)0.42725 (14)0.0166 (5)
C31.0143 (2)0.7552 (4)0.35783 (15)0.0213 (5)
H31.05910.85170.34990.026*
C40.9879 (2)0.5930 (4)0.30892 (15)0.0234 (6)
H41.01580.58330.26840.028*
C50.88694 (19)0.4691 (4)0.37672 (15)0.0174 (5)
C60.8114 (2)0.3068 (4)0.38376 (15)0.0197 (5)
C70.4615 (2)0.3287 (3)0.35817 (15)0.0173 (5)
C80.4441 (2)0.3677 (4)0.27753 (15)0.0216 (5)
H80.50160.36420.25930.026*
C90.3419 (2)0.4107 (4)0.22648 (16)0.0233 (6)
H90.33000.43480.17310.028*
C100.2537 (2)0.4193 (4)0.25332 (15)0.0233 (6)
H100.18500.45040.21760.028*
C110.2682 (2)0.3826 (4)0.33062 (16)0.0229 (6)
H110.20950.38820.34750.027*
C120.3732 (2)0.3354 (4)0.38588 (15)0.0187 (5)
C130.3932 (2)0.2948 (3)0.46547 (15)0.0183 (5)
H130.33660.30140.48460.022*
C140.4961 (2)0.2445 (4)0.51706 (15)0.0183 (5)
C150.5195 (2)0.1983 (4)0.59890 (15)0.0219 (6)
H150.46440.20360.61960.026*
C160.6211 (2)0.1467 (4)0.64685 (16)0.0239 (6)
H160.63580.11820.70030.029*
C170.7049 (2)0.1364 (4)0.61494 (16)0.0237 (6)
H170.77380.09770.64800.028*
C180.6877 (2)0.1814 (4)0.53774 (15)0.0210 (5)
H180.74410.17590.51840.025*
C190.5823 (2)0.2368 (3)0.48739 (14)0.0180 (5)
H3N0.6133 (15)0.292 (4)0.3912 (15)0.022*
U11U22U33U12U13U23
Zn10.0244 (3)0.0228 (3)0.0256 (3)−0.00764 (17)0.0137 (2)−0.00581 (17)
N10.0126 (10)0.0220 (11)0.0196 (10)0.0012 (8)0.0058 (8)0.0009 (9)
N20.0187 (11)0.0312 (12)0.0221 (11)−0.0029 (9)0.0093 (9)−0.0022 (9)
N30.0152 (11)0.0215 (11)0.0217 (11)−0.0001 (8)0.0090 (9)0.0011 (9)
O10.0224 (9)0.0225 (9)0.0252 (10)−0.0031 (7)0.0118 (8)−0.0029 (7)
O20.0303 (11)0.0281 (10)0.0318 (11)−0.0089 (8)0.0205 (9)−0.0043 (8)
O30.0149 (9)0.0282 (10)0.0251 (10)−0.0018 (7)0.0058 (8)0.0009 (8)
O40.0209 (9)0.0198 (9)0.0234 (9)−0.0017 (7)0.0059 (8)−0.0002 (7)
C10.0142 (12)0.0211 (13)0.0193 (13)0.0010 (10)0.0058 (10)0.0012 (10)
C20.0120 (11)0.0199 (12)0.0177 (12)0.0017 (9)0.0051 (10)0.0034 (10)
C30.0131 (12)0.0285 (13)0.0226 (13)−0.0016 (10)0.0067 (10)0.0028 (11)
C40.0181 (13)0.0320 (15)0.0226 (13)0.0014 (11)0.0102 (11)−0.0014 (11)
C50.0109 (11)0.0223 (12)0.0177 (12)0.0004 (9)0.0035 (10)0.0003 (10)
C60.0164 (12)0.0248 (13)0.0182 (12)−0.0031 (10)0.0065 (10)−0.0050 (10)
C70.0161 (12)0.0150 (11)0.0207 (13)−0.0002 (9)0.0064 (10)−0.0015 (9)
C80.0201 (13)0.0250 (13)0.0226 (13)0.0016 (10)0.0110 (11)0.0003 (11)
C90.0267 (14)0.0232 (13)0.0186 (13)0.0004 (11)0.0066 (11)−0.0013 (10)
C100.0156 (13)0.0259 (13)0.0233 (14)0.0011 (10)0.0009 (11)0.0021 (11)
C110.0149 (12)0.0256 (13)0.0284 (14)−0.0010 (10)0.0081 (11)0.0008 (11)
C120.0165 (12)0.0188 (12)0.0224 (13)−0.0008 (9)0.0088 (11)−0.0016 (10)
C130.0165 (12)0.0187 (12)0.0231 (13)−0.0027 (10)0.0112 (10)−0.0028 (10)
C140.0177 (12)0.0158 (12)0.0223 (13)−0.0035 (9)0.0083 (10)−0.0022 (10)
C150.0233 (13)0.0232 (13)0.0231 (13)−0.0040 (11)0.0131 (11)−0.0009 (10)
C160.0250 (14)0.0257 (13)0.0203 (13)−0.0065 (11)0.0073 (11)0.0017 (10)
C170.0164 (13)0.0265 (13)0.0247 (14)−0.0015 (10)0.0032 (11)0.0050 (11)
C180.0152 (12)0.0232 (13)0.0252 (14)−0.0020 (10)0.0080 (11)0.0010 (10)
C190.0194 (13)0.0163 (11)0.0199 (12)−0.0032 (10)0.0090 (10)0.0000 (10)
Zn1—O12.0326 (17)C7—C81.410 (4)
Zn1—O1i2.0326 (17)C7—C121.425 (3)
Zn1—N1i2.093 (2)C8—C91.366 (4)
Zn1—N12.093 (2)C8—H80.9300
Zn1—O4ii2.2435 (17)C9—C101.414 (4)
Zn1—O4iii2.2435 (17)C9—H90.9300
N1—C31.332 (3)C10—C111.357 (4)
N1—C21.338 (3)C10—H100.9300
N2—C41.333 (4)C11—C121.425 (4)
N2—C51.340 (3)C11—H110.9300
N3—C71.358 (3)C12—C131.387 (4)
N3—C191.359 (3)C13—C141.388 (4)
N3—H3N0.86 (2)C13—H130.9300
O1—C11.273 (3)C14—C191.422 (3)
O2—C11.240 (3)C14—C151.427 (4)
O3—C61.263 (3)C15—C161.357 (4)
O4—C61.249 (3)C15—H150.9300
C1—C21.528 (3)C16—C171.422 (4)
C2—C51.399 (3)C16—H160.9300
C3—C41.377 (4)C17—C181.359 (4)
C3—H30.9300C17—H170.9300
C4—H40.9300C18—C191.414 (4)
C5—C61.526 (3)C18—H180.9300
O1—Zn1—O1i180.0O3—C6—C5114.1 (2)
O1—Zn1—N1i99.32 (7)N3—C7—C8120.4 (2)
O1i—Zn1—N1i80.68 (7)N3—C7—C12119.5 (2)
O1—Zn1—N180.68 (7)C8—C7—C12120.1 (2)
O1i—Zn1—N199.32 (7)C9—C8—C7119.3 (2)
N1i—Zn1—N1180.0C9—C8—H8120.4
O1—Zn1—O4ii86.88 (7)C7—C8—H8120.4
O1i—Zn1—O4ii93.12 (7)C8—C9—C10121.2 (2)
N1i—Zn1—O4ii89.71 (7)C8—C9—H9119.4
N1—Zn1—O4ii90.29 (7)C10—C9—H9119.4
O1—Zn1—O4iii93.12 (7)C11—C10—C9120.8 (2)
O1i—Zn1—O4iii86.88 (7)C11—C10—H10119.6
N1i—Zn1—O4iii90.29 (7)C9—C10—H10119.6
N1—Zn1—O4iii89.71 (7)C10—C11—C12120.1 (2)
O4ii—Zn1—O4iii180.000 (1)C10—C11—H11120.0
C3—N1—C2118.8 (2)C12—C11—H11120.0
C3—N1—Zn1129.49 (17)C13—C12—C11122.9 (2)
C2—N1—Zn1111.71 (16)C13—C12—C7118.5 (2)
C4—N2—C5116.2 (2)C11—C12—C7118.6 (2)
C7—N3—C19122.7 (2)C12—C13—C14121.2 (2)
C7—N3—H3N115.6 (19)C12—C13—H13119.4
C19—N3—H3N121.6 (19)C14—C13—H13119.4
C1—O1—Zn1115.63 (15)C13—C14—C19119.0 (2)
C6—O4—Zn1iv145.70 (16)C13—C14—C15122.8 (2)
O2—C1—O1126.6 (2)C19—C14—C15118.2 (2)
O2—C1—C2117.0 (2)C16—C15—C14120.8 (2)
O1—C1—C2116.4 (2)C16—C15—H15119.6
N1—C2—C5119.9 (2)C14—C15—H15119.6
N1—C2—C1115.5 (2)C15—C16—C17119.6 (2)
C5—C2—C1124.7 (2)C15—C16—H16120.2
N1—C3—C4120.1 (2)C17—C16—H16120.2
N1—C3—H3119.9C18—C17—C16122.1 (2)
C4—C3—H3119.9C18—C17—H17118.9
N2—C4—C3123.1 (2)C16—C17—H17118.9
N2—C4—H4118.5C17—C18—C19118.7 (2)
C3—C4—H4118.5C17—C18—H18120.6
N2—C5—C2121.9 (2)C19—C18—H18120.6
N2—C5—C6115.7 (2)N3—C19—C18120.4 (2)
C2—C5—C6122.3 (2)N3—C19—C14119.1 (2)
O4—C6—O3126.0 (2)C18—C19—C14120.5 (2)
O4—C6—C5119.9 (2)
O1—Zn1—N1—C3179.3 (2)N2—C5—C6—O483.9 (3)
O1i—Zn1—N1—C3−0.7 (2)C2—C5—C6—O4−98.6 (3)
O4ii—Zn1—N1—C392.5 (2)N2—C5—C6—O3−93.2 (3)
O4iii—Zn1—N1—C3−87.5 (2)C2—C5—C6—O384.3 (3)
O1—Zn1—N1—C2−1.26 (16)C19—N3—C7—C8−177.2 (2)
O1i—Zn1—N1—C2178.74 (16)C19—N3—C7—C122.4 (4)
O4ii—Zn1—N1—C2−88.05 (16)N3—C7—C8—C9179.3 (2)
O4iii—Zn1—N1—C291.95 (16)C12—C7—C8—C9−0.4 (4)
N1i—Zn1—O1—C1−177.15 (17)C7—C8—C9—C100.8 (4)
N1—Zn1—O1—C12.85 (17)C8—C9—C10—C11−0.8 (4)
O4ii—Zn1—O1—C193.66 (17)C9—C10—C11—C120.2 (4)
O4iii—Zn1—O1—C1−86.34 (17)C10—C11—C12—C13−179.4 (2)
Zn1—O1—C1—O2175.2 (2)C10—C11—C12—C70.2 (4)
Zn1—O1—C1—C2−3.8 (3)N3—C7—C12—C13−0.1 (3)
C3—N1—C2—C5−0.7 (3)C8—C7—C12—C13179.5 (2)
Zn1—N1—C2—C5179.80 (17)N3—C7—C12—C11−179.8 (2)
C3—N1—C2—C1179.3 (2)C8—C7—C12—C11−0.2 (3)
Zn1—N1—C2—C1−0.2 (2)C11—C12—C13—C14178.3 (2)
O2—C1—C2—N1−176.4 (2)C7—C12—C13—C14−1.4 (4)
O1—C1—C2—N12.7 (3)C12—C13—C14—C190.7 (4)
O2—C1—C2—C53.6 (4)C12—C13—C14—C15−178.8 (2)
O1—C1—C2—C5−177.4 (2)C13—C14—C15—C16178.9 (2)
C2—N1—C3—C40.7 (4)C19—C14—C15—C16−0.6 (4)
Zn1—N1—C3—C4−179.85 (18)C14—C15—C16—C17−0.7 (4)
C5—N2—C4—C3−0.7 (4)C15—C16—C17—C181.6 (4)
N1—C3—C4—N20.0 (4)C16—C17—C18—C19−1.2 (4)
C4—N2—C5—C20.7 (4)C7—N3—C19—C18176.9 (2)
C4—N2—C5—C6178.2 (2)C7—N3—C19—C14−3.1 (4)
N1—C2—C5—N2−0.1 (4)C17—C18—C19—N3179.8 (2)
C1—C2—C5—N2179.9 (2)C17—C18—C19—C14−0.2 (4)
N1—C2—C5—C6−177.4 (2)C13—C14—C19—N31.6 (3)
C1—C2—C5—C62.6 (4)C15—C14—C19—N3−178.9 (2)
Zn1iv—O4—C6—O3−171.95 (18)C13—C14—C19—C18−178.4 (2)
Zn1iv—O4—C6—C511.3 (4)C15—C14—C19—C181.1 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3N···O30.86 (2)1.78 (2)2.634 (3)172 (3)
C13—H13···O2v0.932.383.211 (4)149
C16—H16···O3vi0.932.493.377 (3)159
Table 1

Selected bond lengths (Å)

Zn1—O12.0326 (17)
Zn1—N12.093 (2)
Zn1—O4i2.2435 (17)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3N⋯O30.86 (2)1.78 (2)2.634 (3)172 (3)
C13—H13⋯O2ii0.932.383.211 (4)149
C16—H16⋯O3iii0.932.493.377 (3)159

Symmetry codes: (ii) ; (iii) .

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