Literature DB >> 21588089

Poly[[bis-{μ(3)-2-[(3,5-dimethyl-1H-pyrazol-1-yl)(phen-yl)meth-yl]propane-dioato}tetra-sodium(I)] 7.5-hydrate].

Ihssan Meskini, Maria Daoudi, Jean-Claude Daran, Taibi Ben Hadda, Hafid Zouihri.   

Abstract

The asymmetric unit of the title polymer, {[Na(4)(C(15)H(14)N(2)O(4))(2)]·7.5H(2)O}(n), contains two 2-[(3,5-dimethyl-1H-pyrazol-1-yl)(phen-yl)meth-yl]propane-dioate (ppmp) anions, eight water mol-ecules (one located on a twofold rotation axis) and five sodium cations (one located on an inversion center and the other one located on a twofold rotation axis). The carboxyl-ate groups of the ppmp anions and the water mol-ecules bridge the Na cations, forming a two-dimensional polymeric structure. In the structure there are two types of coordination environment around the metal cations: one Na cation is coordinated by five O atoms in a distorted square-pyramidal geometry while the other four Na cations are coordinated by six O atoms in a distorted octa-hedral geometry. Extensive O-H⋯O and O-H⋯N hydrogen bonding is present in the crystal structure. The H atoms of one methyl group of the ppmp anion are disordered equally over two positions.

Entities:  

Year:  2010        PMID: 21588089      PMCID: PMC3007501          DOI: 10.1107/S1600536810028515

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds displaying biological activity, see: Dayam et al. (2007 ▶); Patil et al. (2007 ▶); Ramkumar et al. (2008 ▶); Sechi et al. (2009 ▶); Zeng et al. (2008 ▶). For the synthetic procedure, see: Pommier & Neamati (2006 ▶).

Experimental

Crystal data

[Na4(C15H14N2O4)2]·7.5H2O M = 799.64 Monoclinic, a = 31.8211 (11) Å b = 14.4951 (4) Å c = 16.1113 (5) Å β = 102.139 (3)° V = 7265.2 (4) Å3 Z = 8 Mo Kα radiation μ = 0.16 mm−1 T = 293 K 0.45 × 0.38 × 0.19 mm

Data collection

Bruker X8 APEXII CCD area-detector diffractometer 76380 measured reflections 9034 independent reflections 6490 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.130 S = 1.02 9034 reflections 488 parameters H-atom parameters constrained Δρmax = 0.53 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810028515/xu2795sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810028515/xu2795Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Na4(C15H14N2O4)2]·7.5H2OF(000) = 3352
Mr = 799.64Dx = 1.462 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2648 reflections
a = 31.8211 (11) Åθ = 1.5–26.3°
b = 14.4951 (4) ŵ = 0.16 mm1
c = 16.1113 (5) ÅT = 293 K
β = 102.139 (3)°Block, colourless
V = 7265.2 (4) Å30.45 × 0.38 × 0.19 mm
Z = 8
Bruker X8 APEXII CCD area-detector diffractometer6490 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.049
graphiteθmax = 28.3°, θmin = 1.3°
φ and ω scansh = −42→42
76380 measured reflectionsk = −19→19
9034 independent reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0783P)2 + 2.736P] where P = (Fo2 + 2Fc2)/3
9034 reflections(Δ/σ)max = 0.006
488 parametersΔρmax = 0.53 e Å3
0 restraintsΔρmin = −0.44 e Å3
Experimental. IR (KBr, [UTF-8]I1/2 cm-1): 1592.46 (C=O), 3248 (OH).The data collection nominally covered a sphere of reciprocal space, by a combination of seven sets of exposures; each set had a different φ angle for the crystal and each exposure covered 0.5° in ω and 20 s in time. The crystal-to-detector distance was 37.5 mm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.13673 (5)0.43818 (11)0.21255 (10)0.0157 (3)
H10.12880.50330.20360.019*
C20.09753 (5)0.38687 (10)0.23022 (10)0.0146 (3)
H20.10490.32150.23900.018*
N10.14699 (4)0.40316 (9)0.13308 (8)0.0171 (3)
N20.15635 (5)0.31192 (9)0.12560 (9)0.0217 (3)
C110.14801 (5)0.45027 (12)0.06112 (11)0.0211 (3)
C1110.17568 (5)0.43350 (12)0.28481 (10)0.0189 (3)
C1120.18973 (7)0.35192 (14)0.32677 (13)0.0351 (5)
H1120.17470.29750.31090.042*
C1130.22592 (7)0.35053 (16)0.39193 (15)0.0451 (6)
H1130.23500.29530.41930.054*
C1140.24851 (6)0.43032 (17)0.41628 (14)0.0420 (5)
H1140.27280.42920.45990.050*
C1150.23495 (7)0.51153 (16)0.37580 (16)0.0450 (6)
H1150.25010.56570.39200.054*
C1160.19862 (6)0.51313 (14)0.31076 (14)0.0328 (4)
H1160.18950.56870.28420.039*
C120.15814 (6)0.38751 (13)0.00471 (11)0.0268 (4)
H120.16100.3990−0.05060.032*
C130.16321 (6)0.30294 (12)0.04696 (12)0.0249 (4)
C140.17451 (8)0.21067 (14)0.01556 (14)0.0417 (5)
H14A0.17530.16530.05930.063*
H14B0.20220.21410.00090.063*
H14C0.15330.1935−0.03370.063*
C150.13940 (7)0.55134 (13)0.05108 (13)0.0308 (4)
H15A0.11110.56430.05980.046*
H15B0.14140.5701−0.00510.046*
H15C0.16020.58460.09200.046*
C210.08148 (5)0.42241 (11)0.30808 (10)0.0177 (3)
C220.05932 (5)0.39513 (11)0.15432 (10)0.0163 (3)
O10.09050 (4)0.50303 (8)0.33362 (8)0.0245 (3)
O20.05884 (4)0.36630 (9)0.33884 (8)0.0292 (3)
O30.04974 (4)0.47344 (8)0.12450 (8)0.0246 (3)
O40.03947 (4)0.32106 (8)0.12934 (8)0.0227 (3)
C30.12948 (5)−0.12031 (11)0.19213 (10)0.0152 (3)
H30.1257−0.18480.20730.018*
C40.08996 (5)−0.06637 (11)0.20531 (10)0.0141 (3)
H40.0968−0.00050.20540.017*
N30.16800 (4)−0.08512 (9)0.25020 (9)0.0177 (3)
N40.17591 (4)0.00742 (9)0.25847 (9)0.0203 (3)
C310.20142 (6)−0.13530 (13)0.29413 (12)0.0249 (4)
C3110.13456 (5)−0.11851 (11)0.10044 (10)0.0175 (3)
C3120.13502 (6)−0.20186 (12)0.05790 (12)0.0274 (4)
H3120.1330−0.25700.08630.033*
C3130.13850 (7)−0.20368 (14)−0.02656 (13)0.0345 (5)
H3130.1389−0.2598−0.05430.041*
C3140.14133 (6)−0.12223 (14)−0.06929 (12)0.0296 (4)
H3140.1435−0.1234−0.12600.035*
C3150.14097 (6)−0.03861 (13)−0.02781 (11)0.0255 (4)
H3150.14310.0163−0.05650.031*
C3160.13747 (5)−0.03674 (12)0.05677 (11)0.0222 (3)
H3160.13710.01950.08430.027*
C320.23146 (6)−0.07307 (13)0.33379 (13)0.0299 (4)
H320.2578−0.08620.36950.036*
C330.21456 (5)0.01393 (12)0.30977 (12)0.0243 (4)
C340.23424 (6)0.10641 (14)0.33425 (14)0.0369 (5)
H34A0.21500.15390.30780.055*0.50
H34B0.26100.11130.31590.055*0.50
H34C0.23940.11330.39480.055*0.50
H34D0.26190.09840.37120.055*0.50
H34E0.21590.14110.36310.055*0.50
H34F0.23750.13910.28420.055*0.50
C350.20217 (7)−0.23784 (14)0.29361 (15)0.0399 (5)
H35A0.1782−0.26100.31490.060*
H35B0.2285−0.25930.32900.060*
H35C0.2003−0.25940.23660.060*
C410.05116 (5)−0.08420 (11)0.13273 (10)0.0154 (3)
C420.07637 (5)−0.08894 (11)0.28921 (10)0.0156 (3)
O50.03524 (4)−0.01421 (8)0.09023 (7)0.0191 (2)
O60.03787 (4)−0.16533 (8)0.11998 (8)0.0230 (3)
O70.08345 (4)−0.16799 (8)0.32102 (8)0.0239 (3)
O80.05735 (4)−0.02532 (8)0.31923 (7)0.0229 (3)
Na10.00000.50000.00000.0202 (2)
Na20.03995 (2)0.00005 (4)0.44768 (4)0.01928 (15)
Na30.00000.28300 (6)0.25000.0230 (2)
Na40.03267 (3)−0.34679 (6)0.13857 (5)0.0347 (2)
Na50.04893 (2)0.15926 (4)0.10917 (4)0.02081 (15)
O11−0.03287 (4)0.35116 (8)0.00998 (7)0.0201 (2)
H111−0.04800.36920.04500.030*
H11B−0.00860.33650.04000.030*
O12−0.03957 (4)0.59680 (9)0.07746 (8)0.0276 (3)
H121−0.05420.56420.10430.041*
H122−0.05540.63690.04890.041*
O210.04694 (4)−0.16789 (8)0.46475 (7)0.0231 (3)
H2110.0208−0.17620.44040.035*
H2120.0611−0.17490.42630.035*
O220.02907 (4)0.15783 (8)0.42770 (8)0.0231 (3)
H2210.04350.17220.39080.035*
H2220.03680.19420.46970.035*
O310.04933 (4)0.15204 (8)0.26444 (8)0.0225 (3)
H31A0.05000.09420.27490.034*
H31B0.07500.16730.26480.034*
O410.0000−0.27849 (13)0.25000.0307 (4)
H4110.0213−0.24700.27360.046*
O420.09668 (4)−0.33909 (8)0.24137 (8)0.0279 (3)
H4210.0932−0.38700.26910.042*
H4220.0940−0.29250.27180.042*
O510.12258 (4)0.15927 (8)0.19318 (8)0.0242 (3)
H5110.14100.11690.21150.036*
H5120.13610.20270.17440.036*
U11U22U33U12U13U23
C10.0160 (7)0.0154 (7)0.0155 (8)−0.0014 (6)0.0030 (6)−0.0002 (6)
C20.0146 (7)0.0150 (7)0.0137 (7)−0.0007 (5)0.0018 (6)0.0003 (6)
N10.0197 (7)0.0161 (6)0.0162 (7)−0.0001 (5)0.0056 (5)0.0010 (5)
N20.0266 (7)0.0171 (7)0.0229 (8)0.0015 (6)0.0086 (6)−0.0003 (6)
C110.0212 (8)0.0232 (9)0.0191 (8)0.0007 (6)0.0051 (7)0.0050 (7)
C1110.0150 (7)0.0245 (8)0.0174 (8)−0.0013 (6)0.0039 (6)−0.0019 (6)
C1120.0344 (11)0.0277 (10)0.0349 (11)−0.0031 (8)−0.0113 (9)0.0033 (8)
C1130.0409 (12)0.0434 (13)0.0409 (13)0.0032 (10)−0.0145 (10)0.0094 (10)
C1140.0238 (10)0.0651 (15)0.0314 (12)−0.0069 (10)−0.0074 (8)−0.0027 (10)
C1150.0347 (11)0.0490 (14)0.0448 (14)−0.0203 (10)−0.0066 (10)−0.0067 (11)
C1160.0308 (10)0.0290 (10)0.0352 (11)−0.0083 (8)−0.0006 (8)0.0001 (8)
C120.0344 (10)0.0299 (10)0.0178 (9)0.0019 (7)0.0090 (7)0.0022 (7)
C130.0286 (9)0.0248 (9)0.0234 (9)−0.0002 (7)0.0099 (7)−0.0022 (7)
C140.0624 (15)0.0312 (11)0.0370 (12)0.0035 (10)0.0229 (11)−0.0055 (9)
C150.0402 (11)0.0237 (9)0.0294 (10)0.0042 (8)0.0093 (8)0.0096 (8)
C210.0153 (7)0.0232 (8)0.0133 (8)−0.0004 (6)0.0004 (6)−0.0002 (6)
C220.0152 (7)0.0207 (8)0.0136 (7)−0.0004 (6)0.0044 (6)−0.0012 (6)
O10.0314 (7)0.0219 (6)0.0219 (6)−0.0028 (5)0.0097 (5)−0.0056 (5)
O20.0354 (7)0.0332 (7)0.0227 (7)−0.0136 (6)0.0143 (6)−0.0036 (5)
O30.0253 (6)0.0210 (6)0.0235 (7)−0.0020 (5)−0.0040 (5)0.0064 (5)
O40.0211 (6)0.0196 (6)0.0237 (6)−0.0021 (5)−0.0035 (5)−0.0039 (5)
C30.0161 (7)0.0152 (7)0.0144 (7)0.0005 (6)0.0034 (6)−0.0009 (6)
C40.0147 (7)0.0145 (7)0.0132 (7)0.0006 (5)0.0031 (6)0.0006 (6)
N30.0169 (6)0.0181 (7)0.0174 (7)0.0021 (5)0.0020 (5)0.0003 (5)
N40.0195 (7)0.0176 (7)0.0232 (8)−0.0007 (5)0.0031 (6)−0.0005 (6)
C310.0201 (8)0.0272 (9)0.0264 (9)0.0069 (7)0.0024 (7)0.0052 (7)
C3110.0146 (7)0.0219 (8)0.0167 (8)0.0012 (6)0.0053 (6)−0.0013 (6)
C3120.0383 (10)0.0216 (9)0.0245 (9)0.0015 (7)0.0113 (8)−0.0018 (7)
C3130.0460 (12)0.0328 (11)0.0262 (10)0.0016 (9)0.0110 (9)−0.0115 (8)
C3140.0245 (9)0.0476 (12)0.0175 (9)−0.0009 (8)0.0066 (7)−0.0037 (8)
C3150.0236 (9)0.0345 (10)0.0184 (9)−0.0029 (7)0.0044 (7)0.0041 (7)
C3160.0243 (8)0.0232 (9)0.0198 (9)0.0001 (7)0.0059 (7)−0.0007 (7)
C320.0182 (8)0.0349 (11)0.0327 (11)0.0033 (7)−0.0033 (7)0.0026 (8)
C330.0180 (8)0.0295 (10)0.0251 (9)−0.0021 (7)0.0038 (7)−0.0013 (7)
C340.0271 (10)0.0353 (11)0.0457 (13)−0.0096 (8)0.0022 (9)−0.0067 (9)
C350.0343 (11)0.0265 (10)0.0536 (14)0.0121 (8)−0.0028 (10)0.0041 (9)
C410.0142 (7)0.0218 (8)0.0114 (7)0.0017 (6)0.0056 (6)−0.0003 (6)
C420.0168 (7)0.0176 (7)0.0118 (7)−0.0008 (6)0.0016 (6)−0.0007 (6)
O50.0207 (6)0.0224 (6)0.0138 (6)0.0041 (4)0.0025 (4)0.0036 (4)
O60.0229 (6)0.0218 (6)0.0219 (6)−0.0030 (5)−0.0007 (5)−0.0010 (5)
O70.0366 (7)0.0202 (6)0.0177 (6)0.0055 (5)0.0118 (5)0.0047 (5)
O80.0326 (7)0.0204 (6)0.0185 (6)0.0062 (5)0.0119 (5)0.0012 (5)
Na10.0243 (5)0.0168 (4)0.0175 (5)−0.0013 (3)−0.0003 (4)0.0014 (4)
Na20.0231 (3)0.0201 (3)0.0154 (3)0.0022 (2)0.0059 (3)−0.0001 (2)
Na30.0219 (5)0.0212 (5)0.0263 (5)0.0000.0060 (4)0.000
Na40.0301 (4)0.0529 (5)0.0206 (4)−0.0048 (3)0.0045 (3)−0.0084 (3)
Na50.0230 (3)0.0220 (3)0.0168 (3)0.0017 (3)0.0027 (3)−0.0014 (3)
O110.0199 (6)0.0241 (6)0.0160 (6)0.0008 (4)0.0033 (5)0.0002 (5)
O120.0253 (6)0.0326 (7)0.0259 (7)0.0014 (5)0.0080 (5)0.0062 (5)
O210.0230 (6)0.0302 (7)0.0165 (6)0.0021 (5)0.0049 (5)0.0016 (5)
O220.0264 (6)0.0201 (6)0.0236 (6)0.0001 (5)0.0073 (5)−0.0035 (5)
O310.0241 (6)0.0185 (6)0.0260 (7)0.0012 (5)0.0078 (5)0.0035 (5)
O410.0288 (10)0.0320 (10)0.0328 (11)0.0000.0099 (8)0.000
O420.0353 (7)0.0197 (6)0.0292 (7)−0.0003 (5)0.0080 (6)0.0001 (5)
O510.0214 (6)0.0181 (6)0.0337 (7)0.0005 (5)0.0073 (5)0.0057 (5)
Na1—O32.3113 (11)C13—C141.500 (3)
Na1—O3i2.3113 (11)C14—H14A0.9600
Na1—O112.4177 (11)C14—H14B0.9600
Na1—O11i2.4177 (11)C14—H14C0.9600
Na1—O122.4028 (13)C15—H15A0.9600
Na1—O12i2.4028 (13)C15—H15B0.9600
Na2—O5ii2.3507 (13)C15—H15C0.9600
Na2—O5iii2.3417 (13)C21—O11.252 (2)
Na2—O82.2818 (13)C21—O21.256 (2)
Na2—O212.4546 (13)C22—O31.245 (2)
Na2—O222.3253 (13)C22—O41.2676 (19)
Na3—O22.4259 (14)C3—N31.468 (2)
Na3—O2ii2.4259 (14)C3—C3111.520 (2)
Na3—O312.4430 (14)C3—C41.533 (2)
Na3—O31ii2.4430 (14)C3—H30.9800
Na3—O42.5862 (13)C4—C411.533 (2)
Na3—O4ii2.5862 (13)C4—C421.538 (2)
Na4—O3iv2.6812 (15)C4—H40.9800
Na4—O62.6565 (14)N3—C311.358 (2)
Na4—O11v2.3956 (14)N3—N41.3661 (19)
Na4—O12iv2.4434 (15)N4—C331.333 (2)
Na4—O412.4634 (11)C31—C321.371 (3)
Na4—O422.3423 (15)C31—C351.487 (3)
Na5—O42.3952 (13)C311—C3121.391 (2)
Na5—O52.5592 (13)C311—C3161.391 (2)
Na5—O21vi2.3176 (13)C312—C3131.389 (3)
Na5—O22ii2.4275 (14)C312—H3120.9300
Na5—O312.5011 (14)C313—C3141.379 (3)
Na5—O512.4478 (14)C313—H3130.9300
Na1—Na4vii3.1655 (8)C314—C3151.385 (3)
Na1—Na4v3.1655 (8)C314—H3140.9300
Na1—H1112.6295C315—C3161.391 (2)
Na1—H11B2.4858C315—H3150.9300
Na2—Na2viii3.3331 (13)C316—H3160.9300
Na2—Na5iii3.4453 (9)C32—C331.393 (3)
Na2—Na5ii3.6158 (9)C32—H320.9300
Na2—H2112.6231C33—C341.497 (3)
Na2—H2122.6649C34—H34A0.9600
Na2—H2212.6683C34—H34B0.9600
Na3—Na53.5036 (8)C34—H34C0.9600
Na3—Na5ii3.5036 (8)C34—H34D0.9600
Na4—Na1iv3.1655 (8)C34—H34E0.9600
Na4—H4212.6015C34—H34F0.9600
Na5—Na2vi3.4453 (9)C35—H35A0.9600
Na5—Na2ii3.6158 (9)C35—H35B0.9600
Na5—H31B2.4723C35—H35C0.9600
C1—N11.476 (2)C41—O61.252 (2)
C1—C1111.513 (2)C41—O51.2684 (19)
C1—C21.530 (2)C42—O81.2544 (19)
C1—H10.9800C42—O71.2562 (19)
C2—C221.537 (2)O11—Na4v2.3956 (14)
C2—C211.539 (2)O11—H1110.8553
C2—H20.9800O11—H11B0.8487
N1—C111.352 (2)O12—Na4vii2.4434 (15)
N1—N21.3665 (19)O12—H1210.8438
N2—C131.337 (2)O12—H1220.8399
C11—C121.371 (2)O21—Na5iii2.3176 (13)
C11—C151.493 (2)O21—H2110.8507
C111—C1161.383 (2)O21—H2120.8458
C111—C1121.389 (3)O22—Na5ii2.4275 (14)
C112—C1131.386 (3)O22—H2210.8489
C112—H1120.9300O22—H2220.8522
C113—C1141.375 (3)O31—H31A0.8540
C113—H1130.9300O31—H31B0.8440
C114—C1151.371 (3)O41—Na4ii2.4634 (11)
C114—H1140.9300O41—H4110.8398
C115—C1161.388 (3)O42—H4210.8453
C115—H1150.9300O42—H4220.8494
C116—H1160.9300O51—H5110.8572
C12—C131.395 (3)O51—H5120.8533
C12—H120.9300
N1—C1—C111110.93 (13)H111—Na1—H11B30.6
N1—C1—C2109.38 (12)O8—Na2—O2295.19 (5)
C111—C1—C2113.78 (13)O8—Na2—O5iii168.93 (5)
N1—C1—H1107.5O22—Na2—O5iii90.64 (5)
C111—C1—H1107.5O8—Na2—O5ii100.26 (5)
C2—C1—H1107.5O22—Na2—O5ii86.37 (5)
C1—C2—C22110.71 (12)O5iii—Na2—O5ii89.48 (5)
C1—C2—C21114.35 (13)O8—Na2—O2184.74 (4)
C22—C2—C21106.25 (12)O22—Na2—O21176.60 (5)
C1—C2—H2108.5O5iii—Na2—O2190.00 (4)
C22—C2—H2108.5O5ii—Na2—O2190.30 (4)
C21—C2—H2108.5O8—Na2—Na2viii144.59 (5)
C11—N1—N2111.61 (13)O22—Na2—Na2viii87.89 (4)
C11—N1—C1128.29 (14)O5iii—Na2—Na2viii44.85 (3)
N2—N1—C1120.09 (12)O5ii—Na2—Na2viii44.63 (3)
C13—N2—N1105.07 (13)O21—Na2—Na2viii90.21 (4)
N1—C11—C12106.54 (15)O8—Na2—Na5iii125.41 (4)
N1—C11—C15123.48 (15)O22—Na2—Na5iii138.59 (4)
C12—C11—C15129.98 (16)O5iii—Na2—Na5iii47.97 (3)
C116—C111—C112117.92 (17)O5ii—Na2—Na5iii93.18 (4)
C116—C111—C1119.36 (16)O21—Na2—Na5iii42.23 (3)
C112—C111—C1122.72 (15)Na2viii—Na2—Na5iii64.45 (2)
C113—C112—C111120.82 (18)O8—Na2—Na5ii101.49 (4)
C113—C112—H112119.6O22—Na2—Na5ii41.53 (3)
C111—C112—H112119.6O5iii—Na2—Na5ii89.11 (4)
C114—C113—C112120.4 (2)O5ii—Na2—Na5ii44.86 (3)
C114—C113—H113119.8O21—Na2—Na5ii135.15 (4)
C112—C113—H113119.8Na2viii—Na2—Na5ii59.28 (2)
C115—C114—C113119.57 (19)Na5iii—Na2—Na5ii123.73 (2)
C115—C114—H114120.2O8—Na2—H21184.3
C113—C114—H114120.2O22—Na2—H211157.7
C114—C115—C116120.17 (19)O5iii—Na2—H21193.8
C114—C115—H115119.9O5ii—Na2—H21171.8
C116—C115—H115119.9O21—Na2—H21118.9
C111—C116—C115121.16 (19)Na2viii—Na2—H21180.0
C111—C116—H116119.4Na5iii—Na2—H21150.4
C115—C116—H116119.4Na5ii—Na2—H211116.6
C11—C12—C13106.19 (16)O8—Na2—H21267.3
C11—C12—H12126.9O22—Na2—H212162.3
C13—C12—H12126.9O5iii—Na2—H212106.3
N2—C13—C12110.59 (15)O5ii—Na2—H21298.9
N2—C13—C14120.33 (16)O21—Na2—H21218.4
C12—C13—C14129.07 (17)Na2viii—Na2—H212107.8
C13—C14—H14A109.5Na5iii—Na2—H21258.4
C13—C14—H14B109.5Na5ii—Na2—H212141.3
H14A—C14—H14B109.5H211—Na2—H21229.6
C13—C14—H14C109.5O8—Na2—H22178.7
H14A—C14—H14C109.5O22—Na2—H22117.9
H14B—C14—H14C109.5O5iii—Na2—H221105.7
C11—C15—H15A109.5O5ii—Na2—H22196.1
C11—C15—H15B109.5O21—Na2—H221163.0
H15A—C15—H15B109.5Na2viii—Na2—H221105.4
C11—C15—H15C109.5Na5iii—Na2—H221152.0
H15A—C15—H15C109.5Na5ii—Na2—H22153.4
H15B—C15—H15C109.5H211—Na2—H221157.1
O1—C21—O2125.86 (15)H212—Na2—H221144.6
O1—C21—C2119.19 (14)O2—Na3—O2ii120.30 (8)
O2—C21—C2114.91 (14)O2—Na3—O31ii147.53 (5)
O3—C22—O4125.76 (15)O2ii—Na3—O31ii85.97 (4)
O3—C22—C2117.81 (14)O2—Na3—O3185.97 (4)
O4—C22—C2116.40 (14)O2ii—Na3—O31147.53 (5)
C21—O2—Na3121.68 (11)O31ii—Na3—O3178.02 (6)
C22—O3—Na1123.65 (10)O2—Na3—O484.31 (4)
C22—O3—Na4vii152.98 (11)O2ii—Na3—O483.51 (4)
Na1—O3—Na4vii78.32 (4)O31ii—Na3—O4119.87 (4)
C22—O4—Na5143.51 (11)O31—Na3—O480.41 (4)
C22—O4—Na3103.32 (10)O2—Na3—O4ii83.51 (4)
Na5—O4—Na389.30 (5)O2ii—Na3—O4ii84.31 (4)
N3—C3—C311111.60 (12)O31ii—Na3—O4ii80.41 (4)
N3—C3—C4109.50 (12)O31—Na3—O4ii119.87 (4)
C311—C3—C4112.58 (13)O4—Na3—O4ii155.37 (7)
N3—C3—H3107.6O2—Na3—Na5104.12 (3)
C311—C3—H3107.6O2ii—Na3—Na5105.40 (3)
C4—C3—H3107.6O31ii—Na3—Na584.53 (4)
C3—C4—C41111.15 (12)O31—Na3—Na545.55 (3)
C3—C4—C42113.80 (12)O4—Na3—Na543.13 (3)
C41—C4—C42107.72 (12)O4ii—Na3—Na5161.48 (4)
C3—C4—H4108.0O2—Na3—Na5ii105.40 (3)
C41—C4—H4108.0O2ii—Na3—Na5ii104.12 (3)
C42—C4—H4108.0O31ii—Na3—Na5ii45.55 (3)
C31—N3—N4111.53 (14)O31—Na3—Na5ii84.53 (4)
C31—N3—C3127.11 (14)O4—Na3—Na5ii161.48 (4)
N4—N3—C3121.02 (13)O4ii—Na3—Na5ii43.13 (3)
C33—N4—N3104.89 (13)Na5—Na3—Na5ii118.41 (3)
N3—C31—C32106.47 (16)O42—Na4—O11v121.53 (5)
N3—C31—C35122.97 (17)O42—Na4—O12iv154.89 (6)
C32—C31—C35130.56 (17)O11v—Na4—O12iv77.79 (5)
C312—C311—C316118.83 (16)O42—Na4—O4184.44 (4)
C312—C311—C3118.58 (15)O11v—Na4—O41145.99 (5)
C316—C311—C3122.56 (14)O12iv—Na4—O4185.57 (4)
C313—C312—C311120.71 (17)O42—Na4—O688.10 (5)
C313—C312—H312119.6O11v—Na4—O684.27 (5)
C311—C312—H312119.6O12iv—Na4—O6111.20 (5)
C314—C313—C312120.00 (18)O41—Na4—O674.34 (5)
C314—C313—H313120.0O42—Na4—O3iv86.82 (5)
C312—C313—H313120.0O11v—Na4—O3iv81.18 (4)
C313—C314—C315120.01 (17)O12iv—Na4—O3iv80.27 (5)
C313—C314—H314120.0O41—Na4—O3iv125.19 (6)
C315—C314—H314120.0O6—Na4—O3iv159.10 (5)
C314—C315—C316120.01 (17)O42—Na4—Na1iv129.79 (4)
C314—C315—H315120.0O11v—Na4—Na1iv49.18 (3)
C316—C315—H315120.0O12iv—Na4—Na1iv48.66 (3)
C315—C316—C311120.43 (16)O41—Na4—Na1iv132.04 (4)
C315—C316—H316119.8O6—Na4—Na1iv129.35 (4)
C311—C316—H316119.8O3iv—Na4—Na1iv45.64 (3)
C31—C32—C33105.99 (16)O42—Na4—H42118.8
C31—C32—H32127.0O11v—Na4—H421130.1
C33—C32—H32127.0O12iv—Na4—H421136.4
N4—C33—C32111.11 (15)O41—Na4—H42181.7
N4—C33—C34120.47 (16)O6—Na4—H421105.1
C32—C33—C34128.42 (17)O3iv—Na4—H42173.9
C33—C34—H34A109.5Na1iv—Na4—H421119.4
C33—C34—H34B109.5O21vi—Na5—O496.07 (5)
H34A—C34—H34B109.5O21vi—Na5—O22ii86.80 (5)
C33—C34—H34C109.5O4—Na5—O22ii83.71 (4)
H34A—C34—H34C109.5O21vi—Na5—O51112.08 (5)
H34B—C34—H34C109.5O4—Na5—O5193.32 (4)
C33—C34—H34D109.5O22ii—Na5—O51161.11 (5)
H34A—C34—H34D141.1O21vi—Na5—O31178.58 (5)
H34B—C34—H34D56.3O4—Na5—O3183.09 (4)
H34C—C34—H34D56.3O22ii—Na5—O3191.97 (5)
C33—C34—H34E109.5O51—Na5—O3169.14 (4)
H34A—C34—H34E56.3O21vi—Na5—O588.01 (4)
H34B—C34—H34E141.1O4—Na5—O5162.77 (5)
H34C—C34—H34E56.3O22ii—Na5—O579.79 (4)
H34D—C34—H34E109.5O51—Na5—O5100.67 (4)
C33—C34—H34F109.5O31—Na5—O592.47 (4)
H34A—C34—H34F56.3O21vi—Na5—Na2vi45.38 (3)
H34B—C34—H34F56.3O4—Na5—Na2vi139.98 (4)
H34C—C34—H34F141.1O22ii—Na5—Na2vi83.76 (4)
H34D—C34—H34F109.5O51—Na5—Na2vi109.59 (4)
H34E—C34—H34F109.5O31—Na5—Na2vi135.19 (4)
C31—C35—H35A109.5O5—Na5—Na2vi42.81 (3)
C31—C35—H35B109.5O21vi—Na5—Na3134.47 (4)
H35A—C35—H35B109.5O4—Na5—Na347.57 (4)
C31—C35—H35C109.5O22ii—Na5—Na365.93 (3)
H35A—C35—H35C109.5O51—Na5—Na398.40 (4)
H35B—C35—H35C109.5O31—Na5—Na344.21 (3)
O6—C41—O5125.44 (15)O5—Na5—Na3119.51 (4)
O6—C41—C4118.26 (13)Na2vi—Na5—Na3148.72 (2)
O5—C41—C4116.30 (14)O21vi—Na5—Na2ii85.72 (4)
O8—C42—O7124.95 (15)O4—Na5—Na2ii123.06 (4)
O8—C42—C4115.47 (13)O22ii—Na5—Na2ii39.43 (3)
O7—C42—C4119.54 (13)O51—Na5—Na2ii138.34 (4)
C41—O5—Na2vi119.93 (10)O31—Na5—Na2ii93.78 (3)
C41—O5—Na2ii118.67 (10)O5—Na5—Na2ii40.38 (3)
Na2vi—O5—Na2ii90.52 (5)Na2vi—Na5—Na2ii56.27 (2)
C41—O5—Na5133.06 (10)Na3—Na5—Na2ii93.46 (2)
Na2vi—O5—Na589.22 (4)O21vi—Na5—H31B161.5
Na2ii—O5—Na594.76 (4)O4—Na5—H31B80.8
C41—O6—Na4159.80 (11)O22ii—Na5—H31B110.8
C42—O8—Na2134.19 (11)O51—Na5—H31B50.3
O3—Na1—O3i180.00 (8)O31—Na5—H31B19.5
O3—Na1—O12i90.88 (4)O5—Na5—H31B100.4
O3i—Na1—O12i89.12 (4)Na2vi—Na5—H31B139.0
O3—Na1—O1289.12 (4)Na3—Na5—H31B54.5
O3i—Na1—O1290.88 (4)Na2ii—Na5—H31B111.4
O12i—Na1—O12180.00 (5)Na4v—O11—Na182.24 (4)
O3—Na1—O11i88.82 (4)Na4v—O11—H111141.9
O3i—Na1—O11i91.18 (4)Na1—O11—H11194.7
O12i—Na1—O11i101.84 (4)Na4v—O11—H11B111.7
O12—Na1—O11i78.16 (4)Na1—O11—H11B84.6
O3—Na1—O1191.18 (4)H111—O11—H11B105.7
O3i—Na1—O1188.82 (4)Na1—O12—Na4vii81.56 (4)
O12i—Na1—O1178.16 (4)Na1—O12—H121110.1
O12—Na1—O11101.84 (4)Na4vii—O12—H121123.7
O11i—Na1—O11180.00 (7)Na1—O12—H122116.0
O3—Na1—Na4vii56.04 (3)Na4vii—O12—H122113.2
O3i—Na1—Na4vii123.96 (3)H121—O12—H122109.7
O12i—Na1—Na4vii130.22 (3)Na5iii—O21—Na292.39 (5)
O12—Na1—Na4vii49.78 (3)Na5iii—O21—H211106.7
O11i—Na1—Na4vii48.58 (3)Na2—O21—H21191.8
O11—Na1—Na4vii131.42 (3)Na5iii—O21—H212146.6
O3—Na1—Na4v123.96 (3)Na2—O21—H21295.0
O3i—Na1—Na4v56.04 (3)H211—O21—H212105.5
O12i—Na1—Na4v49.78 (3)Na2—O22—Na5ii99.04 (5)
O12—Na1—Na4v130.22 (3)Na2—O22—H221104.5
O11i—Na1—Na4v131.42 (3)Na5ii—O22—H221120.1
O11—Na1—Na4v48.58 (3)Na2—O22—H222119.2
Na4vii—Na1—Na4v180.00 (2)Na5ii—O22—H222107.5
O3—Na1—H11188.4H221—O22—H222107.1
O3i—Na1—H11191.6Na3—O31—Na590.24 (4)
O12i—Na1—H11196.9Na3—O31—H31A140.3
O12—Na1—H11183.1Na5—O31—H31A103.5
O11i—Na1—H111161.1Na3—O31—H31B113.4
O11—Na1—H11118.9Na5—O31—H31B78.3
Na4vii—Na1—H111115.8H31A—O31—H31B105.8
Na4v—Na1—H11164.2Na4—O41—Na4ii132.60 (9)
O3—Na1—H11B73.0Na4—O41—H41197.1
O3i—Na1—H11B107.0Na4ii—O41—H411108.3
O12i—Na1—H11B71.1Na4—O42—H42198.2
O12—Na1—H11B108.9Na4—O42—H422105.5
O11i—Na1—H11B160.1H421—O42—H422107.9
O11—Na1—H11B19.9Na5—O51—H511134.1
Na4vii—Na1—H11B121.6Na5—O51—H512107.4
Na4v—Na1—H11B58.4H511—O51—H512107.0
D—H···AD—HH···AD···AD—H···A
O11—H111···O2ii0.861.972.7404 (16)149
O11—H11B···O40.851.882.7067 (16)165
O12—H121···O1ii0.841.902.7391 (17)174
O21—H211···O6ii0.851.922.7566 (17)167
O21—H212···O70.851.972.8007 (16)165
O22—H221···O310.852.102.8381 (17)145
O22—H222···O11ii0.852.312.9707 (16)135
O22—H222···O6iii0.852.453.0532 (18)128
O31—H31A···O80.851.872.7128 (16)169
O31—H31B···O510.842.092.8085 (17)142
O41—H411···O70.842.273.1061 (16)172
O42—H421···O1iv0.851.922.7582 (17)175
O42—H422···O70.852.032.8639 (17)168
O51—H511···N40.861.992.8424 (18)171
O51—H512···N20.851.942.7799 (18)169
Table 1

Selected bond lengths (Å)

Na1—O32.3113 (11)
Na1—O112.4177 (11)
Na1—O122.4028 (13)
Na2—O5i2.3507 (13)
Na2—O5ii2.3417 (13)
Na2—O82.2818 (13)
Na2—O212.4546 (13)
Na2—O222.3253 (13)
Na3—O22.4259 (14)
Na3—O312.4430 (14)
Na3—O42.5862 (13)
Na4—O3iii2.6812 (15)
Na4—O62.6565 (14)
Na4—O11iv2.3956 (14)
Na4—O12iii2.4434 (15)
Na4—O412.4634 (11)
Na4—O422.3423 (15)
Na5—O42.3952 (13)
Na5—O52.5592 (13)
Na5—O21v2.3176 (13)
Na5—O22i2.4275 (14)
Na5—O312.5011 (14)
Na5—O512.4478 (14)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O11—H111⋯O2i0.861.972.7404 (16)149
O11—H11B⋯O40.851.882.7067 (16)165
O12—H121⋯O1i0.841.902.7391 (17)174
O21—H211⋯O6i0.851.922.7566 (17)167
O21—H212⋯O70.851.972.8007 (16)165
O22—H221⋯O310.852.102.8381 (17)145
O22—H222⋯O11i0.852.312.9707 (16)135
O22—H222⋯O6ii0.852.453.0532 (18)128
O31—H31A⋯O80.851.872.7128 (16)169
O31—H31B⋯O510.842.092.8085 (17)142
O41—H411⋯O70.842.273.1061 (16)172
O42—H421⋯O1iii0.851.922.7582 (17)175
O42—H422⋯O70.852.032.8639 (17)168
O51—H511⋯N40.861.992.8424 (18)171
O51—H512⋯N20.851.942.7799 (18)169

Symmetry codes: (i) ; (ii) ; (iii) .

  8 in total

1.  Mining the NCI antiviral compounds for HIV-1 integrase inhibitors.

Authors:  Jinxia Deng; James A Kelley; Joseph J Barchi; Tino Sanchez; Raveendra Dayam; Yves Pommier; Nouri Neamati
Journal:  Bioorg Med Chem       Date:  2006-02-07       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Design, synthesis, molecular modeling, and anti-HIV-1 integrase activity of a series of photoactivatable diketo acid-containing inhibitors as affinity probes.

Authors:  Mario Sechi; Fabrizio Carta; Luciano Sannia; Roberto Dallocchio; Alessandro Dessì; Rasha I Al-Safi; Nouri Neamati
Journal:  Antiviral Res       Date:  2009-01-09       Impact factor: 5.970

4.  Discovery of 3-acetyl-4-hydroxy-2-pyranone derivatives and their difluoridoborate complexes as a novel class of HIV-1 integrase inhibitors.

Authors:  Kavya Ramkumar; Konstantin V Tambov; Rambabu Gundla; Alexander V Manaev; Alexandr V Manaev; Vladimir Yarovenko; Valery F Traven; Nouri Neamati
Journal:  Bioorg Med Chem       Date:  2008-08-30       Impact factor: 3.641

5.  Synthesis and biological evaluation of novel 5(H)-phenanthridin-6-ones, 5(H)-phenanthridin-6-one diketo acid, and polycyclic aromatic diketo acid analogs as new HIV-1 integrase inhibitors.

Authors:  Shivaputra Patil; Shantaram Kamath; Tino Sanchez; Nouri Neamati; Raymond F Schinazi; John K Buolamwini
Journal:  Bioorg Med Chem       Date:  2006-11-16       Impact factor: 3.641

6.  Efficient synthesis and utilization of phenyl-substituted heteroaromatic carboxylic acids as aryl diketo acid isosteres in the design of novel HIV-1 integrase inhibitors.

Authors:  Li-Fan Zeng; Hu-Shan Zhang; Yun-Hua Wang; Tino Sanchez; Yong-Tang Zheng; Nouri Neamati; Ya-Qiu Long
Journal:  Bioorg Med Chem Lett       Date:  2008-07-15       Impact factor: 2.823

7.  Substituted 2-pyrrolinone inhibitors of HIV-1 integrase.

Authors:  Raveendra Dayam; Laith Q Al-Mawsawi; Nouri Neamati
Journal:  Bioorg Med Chem Lett       Date:  2007-09-20       Impact factor: 2.823

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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