| Literature DB >> 21588085 |
Jun-Dan Fu1, Chun-Yan Zhang, Qing-Yu Shi, Yi-Hang Wen.
Abstract
In the centrosymmetric dinuclear title complex, [Cu(2)(C(12)H(6)O(4))(2)(C(3)H(7)NO)(4)(H(2)O)(2)], the coordination environment of each Cu(II) atom displays a distorted CuO(5) square-pyramidal geometry, which is formed by two carboxyl-ate O atoms of two μ-1,8-nap ligands (1,8-nap is naphthalene-1,8-dicarboxyl-ate), two O atoms of two DMF (DMF is N,N'-dimethyl-formamide) and one coordinated water mol-ecule. The Cu-O distances involving the four O atoms in the square plane are in the range 1.9501 (11)-1.9677 (11) Å, with the Cu atom lying nearly in the plane [deviation = 0.0726 (2) Å]. The axial O atom occupies the peak position with a Cu-O distance of 2.885 (12) Å, which is significantly longer than the rest of the Cu-O distances. Each 1,8-nap ligand acts as bridge, linking two Cu(II) atoms into a dinuclear structure. Inter-molecular O-H⋯O and C-H⋯O hydrogen-bonding inter-actions consolidate the structure.Entities:
Year: 2010 PMID: 21588085 PMCID: PMC3007367 DOI: 10.1107/S1600536810028497
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu2(C12H6O4)2(C3H7NO)4(H2O)2] | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 9928 reflections |
| θ = 2.4–27.7° | |
| µ = 1.15 mm−1 | |
| β = 102.249 (2)° | Block, blue |
| 0.40 × 0.26 × 0.13 mm | |
| Bruker APEXII area-detector diffractometer | 4625 independent reflections |
| Radiation source: fine-focus sealed tube | 4076 reflections with |
| graphite | |
| ω scans | θmax = 27.7°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 29673 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4625 reflections | (Δ/σ)max = 0.002 |
| 259 parameters | Δρmax = 0.28 e Å−3 |
| 5 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 0.124473 (10) | 0.670966 (18) | 0.464441 (8) | 0.03052 (7) | |
| C1 | 0.33281 (9) | 0.85492 (16) | 0.40975 (7) | 0.0341 (3) | |
| C2 | 0.31963 (10) | 0.94374 (17) | 0.35537 (7) | 0.0395 (4) | |
| C3 | 0.38265 (12) | 1.0098 (2) | 0.34354 (9) | 0.0543 (5) | |
| H3A | 0.4291 | 1.0076 | 0.3714 | 0.065* | |
| C4 | 0.37868 (14) | 1.0808 (2) | 0.29013 (11) | 0.0684 (6) | |
| H4A | 0.4219 | 1.1266 | 0.2834 | 0.082* | |
| C5 | 0.31253 (14) | 1.0826 (2) | 0.24877 (10) | 0.0627 (6) | |
| H5A | 0.3110 | 1.1271 | 0.2130 | 0.075* | |
| C6 | 0.24541 (13) | 1.01821 (18) | 0.25878 (8) | 0.0485 (4) | |
| C7 | 0.24722 (10) | 0.95047 (16) | 0.31396 (7) | 0.0381 (3) | |
| C8 | 0.17617 (14) | 1.0204 (2) | 0.21466 (8) | 0.0568 (5) | |
| H8A | 0.1752 | 1.0654 | 0.1791 | 0.068* | |
| C9 | 0.11186 (13) | 0.9584 (2) | 0.22331 (8) | 0.0571 (5) | |
| H9A | 0.0680 | 0.9554 | 0.1929 | 0.069* | |
| C10 | 0.11117 (11) | 0.89818 (19) | 0.27848 (8) | 0.0460 (4) | |
| H10A | 0.0660 | 0.8583 | 0.2846 | 0.055* | |
| C11 | 0.17582 (10) | 0.89708 (16) | 0.32346 (7) | 0.0367 (3) | |
| C12 | 0.16459 (9) | 0.85435 (16) | 0.38382 (7) | 0.0334 (3) | |
| C13 | 0.09853 (12) | 0.4309 (2) | 0.38365 (9) | 0.0543 (5) | |
| H13A | 0.1348 | 0.4846 | 0.3707 | 0.065* | |
| C14 | 0.1278 (3) | 0.2623 (3) | 0.31590 (17) | 0.1263 (15) | |
| H14A | 0.1622 | 0.3321 | 0.3085 | 0.189* | |
| H14B | 0.0923 | 0.2401 | 0.2796 | 0.189* | |
| H14C | 0.1572 | 0.1836 | 0.3310 | 0.189* | |
| C15 | 0.02931 (19) | 0.2191 (3) | 0.37687 (13) | 0.0902 (9) | |
| H15A | 0.0055 | 0.2632 | 0.4055 | 0.135* | |
| H15B | 0.0551 | 0.1388 | 0.3940 | 0.135* | |
| H15C | −0.0096 | 0.1955 | 0.3426 | 0.135* | |
| C16 | −0.03349 (10) | 0.72571 (17) | 0.46612 (8) | 0.0418 (4) | |
| H16A | −0.0370 | 0.6338 | 0.4735 | 0.050* | |
| C17 | −0.16911 (14) | 0.7426 (3) | 0.46719 (17) | 0.0956 (10) | |
| H17A | −0.1636 | 0.6470 | 0.4735 | 0.143* | |
| H17B | −0.2080 | 0.7597 | 0.4320 | 0.143* | |
| H17C | −0.1841 | 0.7838 | 0.5007 | 0.143* | |
| C18 | −0.09461 (13) | 0.9433 (2) | 0.44989 (12) | 0.0661 (6) | |
| H18A | −0.0439 | 0.9698 | 0.4457 | 0.099* | |
| H18B | −0.1075 | 0.9902 | 0.4829 | 0.099* | |
| H18C | −0.1315 | 0.9656 | 0.4143 | 0.099* | |
| O1W | 0.22801 (6) | 0.59540 (12) | 0.46744 (5) | 0.0358 (2) | |
| H1WA | 0.2520 (12) | 0.641 (2) | 0.4477 (8) | 0.054* | |
| H1WB | 0.2520 (12) | 0.589 (2) | 0.5009 (7) | 0.054* | |
| O1 | 0.06739 (7) | 0.47781 (13) | 0.42143 (6) | 0.0511 (3) | |
| O2 | 0.02961 (7) | 0.77247 (12) | 0.46251 (6) | 0.0434 (3) | |
| O3 | 0.13036 (6) | 0.74302 (12) | 0.38655 (5) | 0.0389 (2) | |
| O4 | 0.18619 (7) | 0.93436 (12) | 0.42557 (5) | 0.0407 (3) | |
| O5 | 0.30792 (7) | 0.73769 (11) | 0.40428 (5) | 0.0389 (3) | |
| O6 | 0.37233 (6) | 0.90670 (12) | 0.45727 (5) | 0.0395 (3) | |
| N1 | 0.08503 (14) | 0.30962 (18) | 0.35940 (9) | 0.0687 (5) | |
| N2 | −0.09595 (8) | 0.79924 (16) | 0.46006 (7) | 0.0458 (3) |
| Cu1 | 0.02809 (11) | 0.02933 (11) | 0.03456 (11) | 0.00029 (7) | 0.00758 (7) | −0.00087 (7) |
| C1 | 0.0308 (7) | 0.0369 (8) | 0.0381 (8) | 0.0040 (6) | 0.0154 (6) | 0.0037 (6) |
| C2 | 0.0456 (9) | 0.0357 (8) | 0.0405 (8) | 0.0005 (7) | 0.0167 (7) | 0.0047 (7) |
| C3 | 0.0534 (11) | 0.0562 (12) | 0.0563 (11) | −0.0080 (9) | 0.0181 (9) | 0.0110 (9) |
| C4 | 0.0724 (15) | 0.0669 (14) | 0.0723 (15) | −0.0164 (12) | 0.0299 (12) | 0.0220 (12) |
| C5 | 0.0888 (16) | 0.0545 (12) | 0.0502 (11) | −0.0057 (11) | 0.0271 (11) | 0.0172 (9) |
| C6 | 0.0709 (12) | 0.0388 (9) | 0.0386 (9) | 0.0042 (8) | 0.0179 (8) | 0.0068 (7) |
| C7 | 0.0525 (10) | 0.0301 (7) | 0.0338 (8) | 0.0041 (7) | 0.0137 (7) | 0.0039 (6) |
| C8 | 0.0837 (15) | 0.0503 (11) | 0.0345 (9) | 0.0080 (10) | 0.0086 (9) | 0.0115 (8) |
| C9 | 0.0696 (13) | 0.0567 (11) | 0.0391 (10) | 0.0086 (10) | −0.0020 (9) | 0.0083 (9) |
| C10 | 0.0512 (10) | 0.0445 (10) | 0.0388 (9) | 0.0060 (8) | 0.0018 (7) | 0.0035 (7) |
| C11 | 0.0460 (9) | 0.0296 (8) | 0.0339 (8) | 0.0074 (6) | 0.0075 (7) | 0.0016 (6) |
| C12 | 0.0294 (7) | 0.0356 (7) | 0.0348 (8) | 0.0099 (5) | 0.0057 (6) | 0.0046 (6) |
| C13 | 0.0593 (12) | 0.0406 (10) | 0.0641 (12) | −0.0089 (9) | 0.0157 (10) | −0.0125 (9) |
| C14 | 0.204 (4) | 0.0723 (19) | 0.129 (3) | −0.004 (2) | 0.093 (3) | −0.0396 (19) |
| C15 | 0.120 (2) | 0.0554 (14) | 0.094 (2) | −0.0337 (16) | 0.0198 (17) | −0.0182 (14) |
| C16 | 0.0412 (9) | 0.0345 (8) | 0.0528 (10) | 0.0041 (7) | 0.0171 (8) | 0.0013 (7) |
| C17 | 0.0436 (12) | 0.0725 (17) | 0.180 (3) | 0.0018 (12) | 0.0436 (16) | 0.0084 (19) |
| C18 | 0.0562 (12) | 0.0503 (12) | 0.0948 (17) | 0.0194 (10) | 0.0228 (12) | 0.0182 (11) |
| O1W | 0.0315 (5) | 0.0401 (6) | 0.0366 (6) | 0.0036 (4) | 0.0088 (4) | 0.0051 (5) |
| O1 | 0.0484 (7) | 0.0433 (7) | 0.0632 (8) | −0.0096 (6) | 0.0151 (6) | −0.0163 (6) |
| O2 | 0.0338 (6) | 0.0384 (6) | 0.0601 (8) | 0.0058 (5) | 0.0147 (5) | 0.0016 (6) |
| O3 | 0.0368 (6) | 0.0414 (6) | 0.0378 (6) | 0.0003 (5) | 0.0067 (5) | 0.0057 (5) |
| O4 | 0.0430 (6) | 0.0438 (6) | 0.0348 (6) | 0.0076 (5) | 0.0069 (5) | −0.0017 (5) |
| O5 | 0.0431 (6) | 0.0337 (6) | 0.0427 (6) | 0.0024 (5) | 0.0156 (5) | 0.0040 (5) |
| O6 | 0.0365 (6) | 0.0442 (6) | 0.0388 (6) | −0.0036 (5) | 0.0103 (5) | 0.0041 (5) |
| N1 | 0.0966 (15) | 0.0409 (9) | 0.0714 (12) | −0.0079 (9) | 0.0241 (11) | −0.0189 (8) |
| N2 | 0.0344 (7) | 0.0431 (8) | 0.0626 (10) | 0.0063 (6) | 0.0166 (7) | 0.0011 (7) |
| Cu1—O2 | 1.9500 (11) | C12—O3 | 1.266 (2) |
| Cu1—O6i | 1.9505 (11) | C13—O1 | 1.217 (2) |
| Cu1—O3 | 1.9544 (11) | C13—N1 | 1.324 (2) |
| Cu1—O1W | 1.9678 (11) | C13—H13A | 0.9300 |
| Cu1—O1 | 2.2885 (12) | C14—N1 | 1.456 (3) |
| C1—O5 | 1.2386 (19) | C14—H14A | 0.9600 |
| C1—O6 | 1.275 (2) | C14—H14B | 0.9600 |
| C1—C2 | 1.508 (2) | C14—H14C | 0.9600 |
| C2—C3 | 1.370 (2) | C15—N1 | 1.452 (3) |
| C2—C7 | 1.428 (2) | C15—H15A | 0.9600 |
| C3—C4 | 1.406 (3) | C15—H15B | 0.9600 |
| C3—H3A | 0.9300 | C15—H15C | 0.9600 |
| C4—C5 | 1.344 (3) | C16—O2 | 1.228 (2) |
| C4—H4A | 0.9300 | C16—N2 | 1.307 (2) |
| C5—C6 | 1.410 (3) | C16—H16A | 0.9300 |
| C5—H5A | 0.9300 | C17—N2 | 1.453 (3) |
| C6—C8 | 1.417 (3) | C17—H17A | 0.9600 |
| C6—C7 | 1.432 (2) | C17—H17B | 0.9600 |
| C7—C11 | 1.430 (2) | C17—H17C | 0.9600 |
| C8—C9 | 1.345 (3) | C18—N2 | 1.447 (3) |
| C8—H8A | 0.9300 | C18—H18A | 0.9600 |
| C9—C10 | 1.406 (3) | C18—H18B | 0.9600 |
| C9—H9A | 0.9300 | C18—H18C | 0.9600 |
| C10—C11 | 1.371 (2) | O1W—H1WA | 0.82 (2) |
| C10—H10A | 0.9300 | O1W—H1WB | 0.80 (1) |
| C11—C12 | 1.507 (2) | O6—Cu1i | 1.9505 (11) |
| C12—O4 | 1.242 (2) | ||
| O2—Cu1—O6i | 94.60 (5) | O3—C12—C11 | 116.67 (14) |
| O2—Cu1—O3 | 90.25 (5) | O1—C13—N1 | 125.4 (2) |
| O6i—Cu1—O3 | 175.05 (5) | O1—C13—H13A | 117.3 |
| O2—Cu1—O1W | 171.31 (5) | N1—C13—H13A | 117.3 |
| O6i—Cu1—O1W | 88.48 (5) | N1—C14—H14A | 109.5 |
| O3—Cu1—O1W | 86.58 (5) | N1—C14—H14B | 109.5 |
| O2—Cu1—O1 | 96.99 (5) | H14A—C14—H14B | 109.5 |
| O6i—Cu1—O1 | 89.67 (5) | N1—C14—H14C | 109.5 |
| O3—Cu1—O1 | 90.71 (5) | H14A—C14—H14C | 109.5 |
| O1W—Cu1—O1 | 91.15 (5) | H14B—C14—H14C | 109.5 |
| O5—C1—O6 | 125.65 (15) | N1—C15—H15A | 109.5 |
| O5—C1—C2 | 118.24 (15) | N1—C15—H15B | 109.5 |
| O6—C1—C2 | 116.03 (14) | H15A—C15—H15B | 109.5 |
| C3—C2—C7 | 119.91 (16) | N1—C15—H15C | 109.5 |
| C3—C2—C1 | 117.06 (16) | H15A—C15—H15C | 109.5 |
| C7—C2—C1 | 122.75 (14) | H15B—C15—H15C | 109.5 |
| C2—C3—C4 | 121.4 (2) | O2—C16—N2 | 122.97 (16) |
| C2—C3—H3A | 119.3 | O2—C16—H16A | 118.5 |
| C4—C3—H3A | 119.3 | N2—C16—H16A | 118.5 |
| C5—C4—C3 | 120.1 (2) | N2—C17—H17A | 109.5 |
| C5—C4—H4A | 120.0 | N2—C17—H17B | 109.5 |
| C3—C4—H4A | 120.0 | H17A—C17—H17B | 109.5 |
| C4—C5—C6 | 121.06 (18) | N2—C17—H17C | 109.5 |
| C4—C5—H5A | 119.5 | H17A—C17—H17C | 109.5 |
| C6—C5—H5A | 119.5 | H17B—C17—H17C | 109.5 |
| C5—C6—C8 | 120.45 (17) | N2—C18—H18A | 109.5 |
| C5—C6—C7 | 119.75 (19) | N2—C18—H18B | 109.5 |
| C8—C6—C7 | 119.79 (18) | H18A—C18—H18B | 109.5 |
| C2—C7—C11 | 125.34 (14) | N2—C18—H18C | 109.5 |
| C2—C7—C6 | 117.57 (16) | H18A—C18—H18C | 109.5 |
| C11—C7—C6 | 117.08 (16) | H18B—C18—H18C | 109.5 |
| C9—C8—C6 | 121.18 (17) | Cu1—O1W—H1WA | 110.9 (15) |
| C9—C8—H8A | 119.4 | Cu1—O1W—H1WB | 111.5 (16) |
| C6—C8—H8A | 119.4 | H1WA—O1W—H1WB | 110.4 (19) |
| C8—C9—C10 | 119.82 (18) | C13—O1—Cu1 | 113.79 (12) |
| C8—C9—H9A | 120.1 | C16—O2—Cu1 | 126.56 (11) |
| C10—C9—H9A | 120.1 | C12—O3—Cu1 | 118.88 (10) |
| C11—C10—C9 | 121.36 (19) | C1—O6—Cu1i | 122.57 (10) |
| C11—C10—H10A | 119.3 | C13—N1—C15 | 121.0 (2) |
| C9—C10—H10A | 119.3 | C13—N1—C14 | 120.5 (2) |
| C10—C11—C7 | 120.33 (15) | C15—N1—C14 | 118.4 (2) |
| C10—C11—C12 | 116.57 (15) | C16—N2—C18 | 121.61 (16) |
| C7—C11—C12 | 122.64 (14) | C16—N2—C17 | 121.86 (18) |
| O4—C12—O3 | 126.08 (15) | C18—N2—C17 | 116.40 (17) |
| O4—C12—C11 | 117.15 (14) | ||
| O5—C1—C2—C3 | −129.54 (18) | C2—C7—C11—C12 | 14.1 (2) |
| O6—C1—C2—C3 | 47.3 (2) | C6—C7—C11—C12 | −164.70 (15) |
| O5—C1—C2—C7 | 44.3 (2) | C10—C11—C12—O4 | −124.12 (16) |
| O6—C1—C2—C7 | −138.81 (16) | C7—C11—C12—O4 | 48.1 (2) |
| C7—C2—C3—C4 | −2.4 (3) | C10—C11—C12—O3 | 52.4 (2) |
| C1—C2—C3—C4 | 171.7 (2) | C7—C11—C12—O3 | −135.41 (15) |
| C2—C3—C4—C5 | −1.4 (4) | N1—C13—O1—Cu1 | 168.26 (19) |
| C3—C4—C5—C6 | 2.4 (4) | O2—Cu1—O1—C13 | 135.72 (15) |
| C4—C5—C6—C8 | −179.7 (2) | O6i—Cu1—O1—C13 | −129.68 (15) |
| C4—C5—C6—C7 | 0.5 (3) | O3—Cu1—O1—C13 | 45.38 (15) |
| C3—C2—C7—C11 | −173.81 (17) | O1W—Cu1—O1—C13 | −41.21 (15) |
| C1—C2—C7—C11 | 12.5 (3) | N2—C16—O2—Cu1 | −174.76 (13) |
| C3—C2—C7—C6 | 5.0 (2) | O6i—Cu1—O2—C16 | −59.16 (15) |
| C1—C2—C7—C6 | −168.68 (15) | O3—Cu1—O2—C16 | 121.82 (15) |
| C5—C6—C7—C2 | −4.1 (3) | O1—Cu1—O2—C16 | 31.08 (15) |
| C8—C6—C7—C2 | 176.05 (17) | O4—C12—O3—Cu1 | −10.9 (2) |
| C5—C6—C7—C11 | 174.82 (17) | C11—C12—O3—Cu1 | 172.91 (10) |
| C8—C6—C7—C11 | −5.0 (2) | O2—Cu1—O3—C12 | 87.85 (11) |
| C5—C6—C8—C9 | 179.4 (2) | O1W—Cu1—O3—C12 | −84.05 (11) |
| C7—C6—C8—C9 | −0.8 (3) | O1—Cu1—O3—C12 | −175.16 (11) |
| C6—C8—C9—C10 | 4.5 (3) | O5—C1—O6—Cu1i | −18.5 (2) |
| C8—C9—C10—C11 | −2.2 (3) | C2—C1—O6—Cu1i | 164.90 (10) |
| C9—C10—C11—C7 | −3.8 (3) | O1—C13—N1—C15 | 0.0 (4) |
| C9—C10—C11—C12 | 168.60 (17) | O1—C13—N1—C14 | −177.9 (3) |
| C2—C7—C11—C10 | −173.94 (16) | O2—C16—N2—C18 | −1.4 (3) |
| C6—C7—C11—C10 | 7.2 (2) | O2—C16—N2—C17 | −177.2 (2) |
| H··· | ||||
| O1W—H1WA···O5 | 0.82 (2) | 1.82 (2) | 2.642 (2) | 178 (2) |
| O1W—H1WB···O4i | 0.80 (1) | 1.82 (2) | 2.623 (2) | 175 (2) |
| C3—H3A···O1ii | 0.93 | 2.49 | 3.396 (3) | 164 |
| C13—H13A···O3 | 0.93 | 2.59 | 3.140 (2) | 119 |
| C17—H17A···O6iii | 0.96 | 2.51 | 3.424 (3) | 159 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.82 (2) | 1.82 (2) | 2.642 (2) | 178 (2) |
| O1 | 0.80 (1) | 1.82 (2) | 2.623 (2) | 175 (2) |
| C3—H3 | 0.93 | 2.49 | 3.396 (3) | 164 |
| C13—H13 | 0.93 | 2.59 | 3.140 (2) | 119 |
| C17—H17 | 0.96 | 2.51 | 3.424 (3) | 159 |
Symmetry codes: (i) ; (ii) ; (iii) .