Literature DB >> 21588085

Bis(μ-naphthalene-1,8-dicarboxyl-ato-κO:O)bis-[aqua-bis-(N,N'-dimethyl-formamide-κO)copper(II)].

Jun-Dan Fu1, Chun-Yan Zhang, Qing-Yu Shi, Yi-Hang Wen.   

Abstract

In the centrosymmetric dinuclear title complex, [Cu(2)(C(12)H(6)O(4))(2)(C(3)H(7)NO)(4)(H(2)O)(2)], the coordination environment of each Cu(II) atom displays a distorted CuO(5) square-pyramidal geometry, which is formed by two carboxyl-ate O atoms of two μ-1,8-nap ligands (1,8-nap is naphthalene-1,8-dicarboxyl-ate), two O atoms of two DMF (DMF is N,N'-dimethyl-formamide) and one coordinated water mol-ecule. The Cu-O distances involving the four O atoms in the square plane are in the range 1.9501 (11)-1.9677 (11) Å, with the Cu atom lying nearly in the plane [deviation = 0.0726 (2) Å]. The axial O atom occupies the peak position with a Cu-O distance of 2.885 (12) Å, which is significantly longer than the rest of the Cu-O distances. Each 1,8-nap ligand acts as bridge, linking two Cu(II) atoms into a dinuclear structure. Inter-molecular O-H⋯O and C-H⋯O hydrogen-bonding inter-actions consolidate the structure.

Entities:  

Year:  2010        PMID: 21588085      PMCID: PMC3007367          DOI: 10.1107/S1600536810028497

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the coordination modes of the 1,8-nap ligand, see: Wen et al. (2007 ▶, 2008 ▶). For related complexes, see: Abourahma et al. (2002 ▶); Bencini et al. (2003 ▶); Fokin et al. (2004 ▶); Sun et al. (2009 ▶).

Experimental

Crystal data

[Cu2(C12H6O4)2(C3H7NO)4(H2O)2] M = 883.83 Monoclinic, a = 17.7078 (4) Å b = 9.9025 (1) Å c = 23.0393 (5) Å β = 102.249 (2)° V = 3948.00 (13) Å3 Z = 4 Mo Kα radiation μ = 1.15 mm−1 T = 296 K 0.40 × 0.26 × 0.13 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.71, T max = 0.86 29673 measured reflections 4625 independent reflections 4076 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.076 S = 1.04 4625 reflections 259 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810028497/pv2300sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810028497/pv2300Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu2(C12H6O4)2(C3H7NO)4(H2O)2]F(000) = 1832
Mr = 883.83Dx = 1.487 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 9928 reflections
a = 17.7078 (4) Åθ = 2.4–27.7°
b = 9.9025 (1) ŵ = 1.15 mm1
c = 23.0393 (5) ÅT = 296 K
β = 102.249 (2)°Block, blue
V = 3948.00 (13) Å30.40 × 0.26 × 0.13 mm
Z = 4
Bruker APEXII area-detector diffractometer4625 independent reflections
Radiation source: fine-focus sealed tube4076 reflections with I > 2σ(I)
graphiteRint = 0.025
ω scansθmax = 27.7°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −23→23
Tmin = 0.71, Tmax = 0.86k = −12→12
29673 measured reflectionsl = −28→30
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.076H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0415P)2 + 2.4079P] where P = (Fo2 + 2Fc2)/3
4625 reflections(Δ/σ)max = 0.002
259 parametersΔρmax = 0.28 e Å3
5 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.124473 (10)0.670966 (18)0.464441 (8)0.03052 (7)
C10.33281 (9)0.85492 (16)0.40975 (7)0.0341 (3)
C20.31963 (10)0.94374 (17)0.35537 (7)0.0395 (4)
C30.38265 (12)1.0098 (2)0.34354 (9)0.0543 (5)
H3A0.42911.00760.37140.065*
C40.37868 (14)1.0808 (2)0.29013 (11)0.0684 (6)
H4A0.42191.12660.28340.082*
C50.31253 (14)1.0826 (2)0.24877 (10)0.0627 (6)
H5A0.31101.12710.21300.075*
C60.24541 (13)1.01821 (18)0.25878 (8)0.0485 (4)
C70.24722 (10)0.95047 (16)0.31396 (7)0.0381 (3)
C80.17617 (14)1.0204 (2)0.21466 (8)0.0568 (5)
H8A0.17521.06540.17910.068*
C90.11186 (13)0.9584 (2)0.22331 (8)0.0571 (5)
H9A0.06800.95540.19290.069*
C100.11117 (11)0.89818 (19)0.27848 (8)0.0460 (4)
H10A0.06600.85830.28460.055*
C110.17582 (10)0.89708 (16)0.32346 (7)0.0367 (3)
C120.16459 (9)0.85435 (16)0.38382 (7)0.0334 (3)
C130.09853 (12)0.4309 (2)0.38365 (9)0.0543 (5)
H13A0.13480.48460.37070.065*
C140.1278 (3)0.2623 (3)0.31590 (17)0.1263 (15)
H14A0.16220.33210.30850.189*
H14B0.09230.24010.27960.189*
H14C0.15720.18360.33100.189*
C150.02931 (19)0.2191 (3)0.37687 (13)0.0902 (9)
H15A0.00550.26320.40550.135*
H15B0.05510.13880.39400.135*
H15C−0.00960.19550.34260.135*
C16−0.03349 (10)0.72571 (17)0.46612 (8)0.0418 (4)
H16A−0.03700.63380.47350.050*
C17−0.16911 (14)0.7426 (3)0.46719 (17)0.0956 (10)
H17A−0.16360.64700.47350.143*
H17B−0.20800.75970.43200.143*
H17C−0.18410.78380.50070.143*
C18−0.09461 (13)0.9433 (2)0.44989 (12)0.0661 (6)
H18A−0.04390.96980.44570.099*
H18B−0.10750.99020.48290.099*
H18C−0.13150.96560.41430.099*
O1W0.22801 (6)0.59540 (12)0.46744 (5)0.0358 (2)
H1WA0.2520 (12)0.641 (2)0.4477 (8)0.054*
H1WB0.2520 (12)0.589 (2)0.5009 (7)0.054*
O10.06739 (7)0.47781 (13)0.42143 (6)0.0511 (3)
O20.02961 (7)0.77247 (12)0.46251 (6)0.0434 (3)
O30.13036 (6)0.74302 (12)0.38655 (5)0.0389 (2)
O40.18619 (7)0.93436 (12)0.42557 (5)0.0407 (3)
O50.30792 (7)0.73769 (11)0.40428 (5)0.0389 (3)
O60.37233 (6)0.90670 (12)0.45727 (5)0.0395 (3)
N10.08503 (14)0.30962 (18)0.35940 (9)0.0687 (5)
N2−0.09595 (8)0.79924 (16)0.46006 (7)0.0458 (3)
U11U22U33U12U13U23
Cu10.02809 (11)0.02933 (11)0.03456 (11)0.00029 (7)0.00758 (7)−0.00087 (7)
C10.0308 (7)0.0369 (8)0.0381 (8)0.0040 (6)0.0154 (6)0.0037 (6)
C20.0456 (9)0.0357 (8)0.0405 (8)0.0005 (7)0.0167 (7)0.0047 (7)
C30.0534 (11)0.0562 (12)0.0563 (11)−0.0080 (9)0.0181 (9)0.0110 (9)
C40.0724 (15)0.0669 (14)0.0723 (15)−0.0164 (12)0.0299 (12)0.0220 (12)
C50.0888 (16)0.0545 (12)0.0502 (11)−0.0057 (11)0.0271 (11)0.0172 (9)
C60.0709 (12)0.0388 (9)0.0386 (9)0.0042 (8)0.0179 (8)0.0068 (7)
C70.0525 (10)0.0301 (7)0.0338 (8)0.0041 (7)0.0137 (7)0.0039 (6)
C80.0837 (15)0.0503 (11)0.0345 (9)0.0080 (10)0.0086 (9)0.0115 (8)
C90.0696 (13)0.0567 (11)0.0391 (10)0.0086 (10)−0.0020 (9)0.0083 (9)
C100.0512 (10)0.0445 (10)0.0388 (9)0.0060 (8)0.0018 (7)0.0035 (7)
C110.0460 (9)0.0296 (8)0.0339 (8)0.0074 (6)0.0075 (7)0.0016 (6)
C120.0294 (7)0.0356 (7)0.0348 (8)0.0099 (5)0.0057 (6)0.0046 (6)
C130.0593 (12)0.0406 (10)0.0641 (12)−0.0089 (9)0.0157 (10)−0.0125 (9)
C140.204 (4)0.0723 (19)0.129 (3)−0.004 (2)0.093 (3)−0.0396 (19)
C150.120 (2)0.0554 (14)0.094 (2)−0.0337 (16)0.0198 (17)−0.0182 (14)
C160.0412 (9)0.0345 (8)0.0528 (10)0.0041 (7)0.0171 (8)0.0013 (7)
C170.0436 (12)0.0725 (17)0.180 (3)0.0018 (12)0.0436 (16)0.0084 (19)
C180.0562 (12)0.0503 (12)0.0948 (17)0.0194 (10)0.0228 (12)0.0182 (11)
O1W0.0315 (5)0.0401 (6)0.0366 (6)0.0036 (4)0.0088 (4)0.0051 (5)
O10.0484 (7)0.0433 (7)0.0632 (8)−0.0096 (6)0.0151 (6)−0.0163 (6)
O20.0338 (6)0.0384 (6)0.0601 (8)0.0058 (5)0.0147 (5)0.0016 (6)
O30.0368 (6)0.0414 (6)0.0378 (6)0.0003 (5)0.0067 (5)0.0057 (5)
O40.0430 (6)0.0438 (6)0.0348 (6)0.0076 (5)0.0069 (5)−0.0017 (5)
O50.0431 (6)0.0337 (6)0.0427 (6)0.0024 (5)0.0156 (5)0.0040 (5)
O60.0365 (6)0.0442 (6)0.0388 (6)−0.0036 (5)0.0103 (5)0.0041 (5)
N10.0966 (15)0.0409 (9)0.0714 (12)−0.0079 (9)0.0241 (11)−0.0189 (8)
N20.0344 (7)0.0431 (8)0.0626 (10)0.0063 (6)0.0166 (7)0.0011 (7)
Cu1—O21.9500 (11)C12—O31.266 (2)
Cu1—O6i1.9505 (11)C13—O11.217 (2)
Cu1—O31.9544 (11)C13—N11.324 (2)
Cu1—O1W1.9678 (11)C13—H13A0.9300
Cu1—O12.2885 (12)C14—N11.456 (3)
C1—O51.2386 (19)C14—H14A0.9600
C1—O61.275 (2)C14—H14B0.9600
C1—C21.508 (2)C14—H14C0.9600
C2—C31.370 (2)C15—N11.452 (3)
C2—C71.428 (2)C15—H15A0.9600
C3—C41.406 (3)C15—H15B0.9600
C3—H3A0.9300C15—H15C0.9600
C4—C51.344 (3)C16—O21.228 (2)
C4—H4A0.9300C16—N21.307 (2)
C5—C61.410 (3)C16—H16A0.9300
C5—H5A0.9300C17—N21.453 (3)
C6—C81.417 (3)C17—H17A0.9600
C6—C71.432 (2)C17—H17B0.9600
C7—C111.430 (2)C17—H17C0.9600
C8—C91.345 (3)C18—N21.447 (3)
C8—H8A0.9300C18—H18A0.9600
C9—C101.406 (3)C18—H18B0.9600
C9—H9A0.9300C18—H18C0.9600
C10—C111.371 (2)O1W—H1WA0.82 (2)
C10—H10A0.9300O1W—H1WB0.80 (1)
C11—C121.507 (2)O6—Cu1i1.9505 (11)
C12—O41.242 (2)
O2—Cu1—O6i94.60 (5)O3—C12—C11116.67 (14)
O2—Cu1—O390.25 (5)O1—C13—N1125.4 (2)
O6i—Cu1—O3175.05 (5)O1—C13—H13A117.3
O2—Cu1—O1W171.31 (5)N1—C13—H13A117.3
O6i—Cu1—O1W88.48 (5)N1—C14—H14A109.5
O3—Cu1—O1W86.58 (5)N1—C14—H14B109.5
O2—Cu1—O196.99 (5)H14A—C14—H14B109.5
O6i—Cu1—O189.67 (5)N1—C14—H14C109.5
O3—Cu1—O190.71 (5)H14A—C14—H14C109.5
O1W—Cu1—O191.15 (5)H14B—C14—H14C109.5
O5—C1—O6125.65 (15)N1—C15—H15A109.5
O5—C1—C2118.24 (15)N1—C15—H15B109.5
O6—C1—C2116.03 (14)H15A—C15—H15B109.5
C3—C2—C7119.91 (16)N1—C15—H15C109.5
C3—C2—C1117.06 (16)H15A—C15—H15C109.5
C7—C2—C1122.75 (14)H15B—C15—H15C109.5
C2—C3—C4121.4 (2)O2—C16—N2122.97 (16)
C2—C3—H3A119.3O2—C16—H16A118.5
C4—C3—H3A119.3N2—C16—H16A118.5
C5—C4—C3120.1 (2)N2—C17—H17A109.5
C5—C4—H4A120.0N2—C17—H17B109.5
C3—C4—H4A120.0H17A—C17—H17B109.5
C4—C5—C6121.06 (18)N2—C17—H17C109.5
C4—C5—H5A119.5H17A—C17—H17C109.5
C6—C5—H5A119.5H17B—C17—H17C109.5
C5—C6—C8120.45 (17)N2—C18—H18A109.5
C5—C6—C7119.75 (19)N2—C18—H18B109.5
C8—C6—C7119.79 (18)H18A—C18—H18B109.5
C2—C7—C11125.34 (14)N2—C18—H18C109.5
C2—C7—C6117.57 (16)H18A—C18—H18C109.5
C11—C7—C6117.08 (16)H18B—C18—H18C109.5
C9—C8—C6121.18 (17)Cu1—O1W—H1WA110.9 (15)
C9—C8—H8A119.4Cu1—O1W—H1WB111.5 (16)
C6—C8—H8A119.4H1WA—O1W—H1WB110.4 (19)
C8—C9—C10119.82 (18)C13—O1—Cu1113.79 (12)
C8—C9—H9A120.1C16—O2—Cu1126.56 (11)
C10—C9—H9A120.1C12—O3—Cu1118.88 (10)
C11—C10—C9121.36 (19)C1—O6—Cu1i122.57 (10)
C11—C10—H10A119.3C13—N1—C15121.0 (2)
C9—C10—H10A119.3C13—N1—C14120.5 (2)
C10—C11—C7120.33 (15)C15—N1—C14118.4 (2)
C10—C11—C12116.57 (15)C16—N2—C18121.61 (16)
C7—C11—C12122.64 (14)C16—N2—C17121.86 (18)
O4—C12—O3126.08 (15)C18—N2—C17116.40 (17)
O4—C12—C11117.15 (14)
O5—C1—C2—C3−129.54 (18)C2—C7—C11—C1214.1 (2)
O6—C1—C2—C347.3 (2)C6—C7—C11—C12−164.70 (15)
O5—C1—C2—C744.3 (2)C10—C11—C12—O4−124.12 (16)
O6—C1—C2—C7−138.81 (16)C7—C11—C12—O448.1 (2)
C7—C2—C3—C4−2.4 (3)C10—C11—C12—O352.4 (2)
C1—C2—C3—C4171.7 (2)C7—C11—C12—O3−135.41 (15)
C2—C3—C4—C5−1.4 (4)N1—C13—O1—Cu1168.26 (19)
C3—C4—C5—C62.4 (4)O2—Cu1—O1—C13135.72 (15)
C4—C5—C6—C8−179.7 (2)O6i—Cu1—O1—C13−129.68 (15)
C4—C5—C6—C70.5 (3)O3—Cu1—O1—C1345.38 (15)
C3—C2—C7—C11−173.81 (17)O1W—Cu1—O1—C13−41.21 (15)
C1—C2—C7—C1112.5 (3)N2—C16—O2—Cu1−174.76 (13)
C3—C2—C7—C65.0 (2)O6i—Cu1—O2—C16−59.16 (15)
C1—C2—C7—C6−168.68 (15)O3—Cu1—O2—C16121.82 (15)
C5—C6—C7—C2−4.1 (3)O1—Cu1—O2—C1631.08 (15)
C8—C6—C7—C2176.05 (17)O4—C12—O3—Cu1−10.9 (2)
C5—C6—C7—C11174.82 (17)C11—C12—O3—Cu1172.91 (10)
C8—C6—C7—C11−5.0 (2)O2—Cu1—O3—C1287.85 (11)
C5—C6—C8—C9179.4 (2)O1W—Cu1—O3—C12−84.05 (11)
C7—C6—C8—C9−0.8 (3)O1—Cu1—O3—C12−175.16 (11)
C6—C8—C9—C104.5 (3)O5—C1—O6—Cu1i−18.5 (2)
C8—C9—C10—C11−2.2 (3)C2—C1—O6—Cu1i164.90 (10)
C9—C10—C11—C7−3.8 (3)O1—C13—N1—C150.0 (4)
C9—C10—C11—C12168.60 (17)O1—C13—N1—C14−177.9 (3)
C2—C7—C11—C10−173.94 (16)O2—C16—N2—C18−1.4 (3)
C6—C7—C11—C107.2 (2)O2—C16—N2—C17−177.2 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O50.82 (2)1.82 (2)2.642 (2)178 (2)
O1W—H1WB···O4i0.80 (1)1.82 (2)2.623 (2)175 (2)
C3—H3A···O1ii0.932.493.396 (3)164
C13—H13A···O30.932.593.140 (2)119
C17—H17A···O6iii0.962.513.424 (3)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WA⋯O50.82 (2)1.82 (2)2.642 (2)178 (2)
O1W—H1WB⋯O4i0.80 (1)1.82 (2)2.623 (2)175 (2)
C3—H3A⋯O1ii0.932.493.396 (3)164
C13—H13A⋯O30.932.593.140 (2)119
C17—H17A⋯O6iii0.962.513.424 (3)159

Symmetry codes: (i) ; (ii) ; (iii) .

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6.  Supramolecular isomerism in coordination compounds: nanoscale molecular hexagons and chains.

Authors:  Heba Abourahma; Brian Moulton; Victor Kravtsov; Michael J Zaworotko
Journal:  J Am Chem Soc       Date:  2002-08-28       Impact factor: 15.419

  6 in total

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