| Literature DB >> 21588067 |
Hoong-Kun Fun, Jia Hao Goh, Sankappa Rai, Arun M Isloor, Prakash Shetty.
Abstract
In the title compound, C(20)H(18)Br(2)N(4)O(8), the inter-planar angle of the pyrimidine rings is 75.1 (2)°. The central benzene ring is inclined at inter-planar angles of 66.5 (2) and 71.9 (2)° with respect to the two pyrimidine rings. In the crystal structure, adjacent mol-ecules are connected into two-mol-ecule-thick arrays parallel to the bc plane via short Br⋯Br [3.5328 (12) Å] and Br⋯O [3.206 (3) and 3.301 (4) Å] inter-actions. A weak inter-molecular π-π aromatic stacking inter-action [centroid-centroid distance = 3.526 (3) Å] is also observed.Entities:
Year: 2010 PMID: 21588067 PMCID: PMC3006963 DOI: 10.1107/S1600536810024724
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H18Br2N4O8 | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2909 reflections |
| θ = 2.7–25.5° | |
| µ = 3.49 mm−1 | |
| β = 123.120 (3)° | Block, brown |
| 0.20 × 0.18 × 0.14 mm | |
| Bruker APEXII DUO CCD diffractometer | 8438 independent reflections |
| Radiation source: fine-focus sealed tube | 4458 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.5°, θmin = 2.7° |
| Absorption correction: multi-scan ( | |
| 25204 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 8438 reflections | (Δ/σ)max = 0.001 |
| 306 parameters | Δρmax = 1.32 e Å−3 |
| 0 restraints | Δρmin = −1.55 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Br1 | 0.30639 (2) | 0.57188 (7) | 0.09822 (4) | 0.0594 (2) | |
| Br2 | 0.08330 (2) | 0.91910 (6) | 0.40182 (3) | 0.04252 (17) | |
| O1 | 0.11548 (12) | 0.9112 (3) | 0.04513 (18) | 0.0337 (7) | |
| O2 | 0.05069 (15) | 0.5753 (3) | 0.15875 (19) | 0.0372 (7) | |
| O3 | 0.28301 (15) | 0.9322 (4) | 0.0904 (3) | 0.0563 (11) | |
| O4 | 0.20456 (14) | 0.4280 (4) | 0.0769 (2) | 0.0459 (9) | |
| O5 | 0.16295 (15) | 0.8884 (5) | 0.1855 (2) | 0.0568 (10) | |
| O6 | 0.16019 (17) | 0.6258 (6) | 0.2086 (3) | 0.0729 (14) | |
| O7 | 0.07542 (16) | 0.5580 (4) | 0.3707 (2) | 0.0422 (8) | |
| O8 | 0.06803 (15) | 1.0608 (4) | 0.27029 (19) | 0.0409 (8) | |
| N1 | 0.19889 (16) | 0.9262 (4) | 0.0691 (2) | 0.0377 (9) | |
| N2 | 0.15798 (13) | 0.6659 (4) | 0.0595 (2) | 0.0324 (8) | |
| N3 | 0.06285 (16) | 0.5635 (4) | 0.2625 (2) | 0.0334 (8) | |
| N4 | 0.05992 (14) | 0.8206 (4) | 0.21251 (19) | 0.0320 (7) | |
| C1 | 0.24118 (18) | 0.8474 (6) | 0.0787 (3) | 0.0378 (10) | |
| C2 | 0.24567 (18) | 0.6781 (6) | 0.0836 (3) | 0.0389 (10) | |
| C3 | 0.20209 (17) | 0.5919 (5) | 0.0728 (3) | 0.0352 (9) | |
| C4 | 0.15971 (16) | 0.8269 (5) | 0.0587 (2) | 0.0311 (9) | |
| C5 | 0.07637 (16) | 0.8238 (5) | 0.0466 (2) | 0.0314 (9) | |
| C6 | 0.02573 (18) | 0.8241 (6) | −0.0133 (3) | 0.0410 (11) | |
| H6A | 0.0198 | 0.8777 | −0.0526 | 0.049* | |
| C7 | −0.01538 (19) | 0.7465 (6) | −0.0153 (3) | 0.0472 (12) | |
| H7A | −0.0494 | 0.7494 | −0.0554 | 0.057* | |
| C8 | −0.00662 (19) | 0.6642 (6) | 0.0420 (3) | 0.0410 (11) | |
| H8A | −0.0343 | 0.6082 | 0.0405 | 0.049* | |
| C9 | 0.04382 (18) | 0.6656 (5) | 0.1021 (2) | 0.0337 (9) | |
| C10 | 0.08581 (17) | 0.7468 (5) | 0.1067 (2) | 0.0314 (8) | |
| C11 | 0.05805 (17) | 0.6583 (5) | 0.2136 (2) | 0.0310 (8) | |
| C12 | 0.06957 (17) | 0.6433 (5) | 0.3175 (2) | 0.0315 (8) | |
| C13 | 0.07150 (16) | 0.8121 (5) | 0.3220 (2) | 0.0318 (9) | |
| C14 | 0.06590 (16) | 0.8963 (5) | 0.2677 (2) | 0.0300 (8) | |
| C15 | 0.2797 (3) | 1.1092 (7) | 0.0878 (5) | 0.068 (2) | |
| H15A | 0.3105 | 1.1541 | 0.0909 | 0.101* | |
| H15B | 0.2780 | 1.1486 | 0.1259 | 0.101* | |
| H15C | 0.2482 | 1.1428 | 0.0450 | 0.101* | |
| C16 | 0.1604 (2) | 0.3438 (6) | 0.0691 (4) | 0.0586 (17) | |
| H16A | 0.1653 | 0.2277 | 0.0675 | 0.088* | |
| H16B | 0.1285 | 0.3779 | 0.0269 | 0.088* | |
| H16C | 0.1575 | 0.3686 | 0.1076 | 0.088* | |
| C17 | 0.1402 (2) | 0.7456 (6) | 0.1719 (3) | 0.0437 (11) | |
| C18 | 0.2141 (3) | 0.9103 (8) | 0.2484 (4) | 0.0720 (14) | |
| H18A | 0.2214 | 1.0256 | 0.2574 | 0.108* | |
| H18B | 0.2409 | 0.8602 | 0.2438 | 0.108* | |
| H18C | 0.2141 | 0.8600 | 0.2860 | 0.108* | |
| C19 | 0.0734 (3) | 0.3785 (6) | 0.3658 (4) | 0.0590 (16) | |
| H19A | 0.0695 | 0.3336 | 0.4013 | 0.089* | |
| H19B | 0.1057 | 0.3382 | 0.3717 | 0.089* | |
| H19C | 0.0436 | 0.3459 | 0.3212 | 0.089* | |
| C20 | 0.0691 (3) | 1.1479 (9) | 0.2166 (4) | 0.0720 (14) | |
| H20A | 0.0732 | 1.2634 | 0.2267 | 0.108* | |
| H20B | 0.0364 | 1.1289 | 0.1729 | 0.108* | |
| H20C | 0.0985 | 1.1093 | 0.2145 | 0.108* |
| Br1 | 0.0381 (3) | 0.0527 (3) | 0.0907 (5) | 0.0122 (2) | 0.0374 (3) | 0.0068 (3) |
| Br2 | 0.0570 (3) | 0.0430 (3) | 0.0376 (3) | −0.0108 (2) | 0.0324 (2) | −0.0123 (2) |
| O1 | 0.0330 (14) | 0.0321 (15) | 0.0452 (19) | 0.0082 (11) | 0.0272 (14) | 0.0116 (13) |
| O2 | 0.058 (2) | 0.0298 (15) | 0.0372 (18) | −0.0026 (13) | 0.0347 (17) | −0.0028 (13) |
| O3 | 0.0390 (18) | 0.0438 (19) | 0.096 (3) | −0.0040 (14) | 0.043 (2) | −0.0001 (19) |
| O4 | 0.0391 (17) | 0.0321 (16) | 0.068 (3) | 0.0026 (12) | 0.0305 (18) | −0.0035 (16) |
| O5 | 0.048 (2) | 0.067 (2) | 0.040 (2) | −0.0182 (17) | 0.0144 (18) | 0.0008 (19) |
| O6 | 0.057 (2) | 0.075 (3) | 0.057 (3) | 0.013 (2) | 0.012 (2) | 0.024 (2) |
| O7 | 0.062 (2) | 0.0343 (17) | 0.040 (2) | −0.0001 (14) | 0.0346 (18) | 0.0038 (14) |
| O8 | 0.056 (2) | 0.0282 (15) | 0.038 (2) | 0.0019 (13) | 0.0257 (17) | −0.0022 (14) |
| N1 | 0.0375 (19) | 0.0338 (19) | 0.048 (2) | 0.0027 (14) | 0.0270 (19) | 0.0063 (17) |
| N2 | 0.0304 (16) | 0.0305 (17) | 0.036 (2) | 0.0020 (13) | 0.0180 (15) | −0.0021 (15) |
| N3 | 0.0444 (19) | 0.0308 (18) | 0.035 (2) | −0.0017 (14) | 0.0279 (18) | −0.0015 (15) |
| N4 | 0.0391 (18) | 0.0312 (17) | 0.0285 (19) | 0.0000 (14) | 0.0202 (16) | 0.0004 (15) |
| C1 | 0.035 (2) | 0.038 (2) | 0.042 (3) | 0.0017 (17) | 0.022 (2) | 0.000 (2) |
| C2 | 0.035 (2) | 0.037 (2) | 0.046 (3) | 0.0058 (17) | 0.023 (2) | −0.001 (2) |
| C3 | 0.034 (2) | 0.031 (2) | 0.040 (3) | 0.0046 (15) | 0.0196 (19) | 0.0021 (18) |
| C4 | 0.0302 (18) | 0.037 (2) | 0.028 (2) | 0.0081 (15) | 0.0168 (17) | 0.0035 (18) |
| C5 | 0.0341 (19) | 0.035 (2) | 0.032 (2) | 0.0063 (16) | 0.0225 (18) | 0.0031 (18) |
| C6 | 0.037 (2) | 0.052 (3) | 0.037 (3) | 0.0065 (19) | 0.022 (2) | 0.011 (2) |
| C7 | 0.033 (2) | 0.060 (3) | 0.040 (3) | 0.002 (2) | 0.015 (2) | 0.000 (2) |
| C8 | 0.038 (2) | 0.049 (3) | 0.038 (3) | −0.0044 (19) | 0.022 (2) | −0.006 (2) |
| C9 | 0.044 (2) | 0.031 (2) | 0.036 (2) | 0.0029 (16) | 0.028 (2) | −0.0070 (18) |
| C10 | 0.038 (2) | 0.031 (2) | 0.029 (2) | 0.0024 (16) | 0.0204 (18) | −0.0012 (17) |
| C11 | 0.039 (2) | 0.0274 (19) | 0.033 (2) | −0.0021 (15) | 0.0233 (19) | −0.0040 (17) |
| C12 | 0.0352 (19) | 0.035 (2) | 0.030 (2) | −0.0022 (16) | 0.0214 (18) | 0.0028 (18) |
| C13 | 0.0311 (18) | 0.037 (2) | 0.032 (2) | −0.0015 (15) | 0.0199 (18) | −0.0054 (18) |
| C14 | 0.0306 (18) | 0.0305 (19) | 0.030 (2) | −0.0004 (14) | 0.0169 (17) | −0.0062 (17) |
| C15 | 0.065 (4) | 0.039 (3) | 0.109 (6) | −0.011 (2) | 0.055 (4) | −0.006 (3) |
| C16 | 0.045 (3) | 0.037 (3) | 0.093 (5) | −0.001 (2) | 0.037 (3) | −0.002 (3) |
| C17 | 0.042 (2) | 0.055 (3) | 0.033 (3) | 0.000 (2) | 0.020 (2) | −0.004 (2) |
| C18 | 0.073 (3) | 0.073 (3) | 0.053 (3) | −0.018 (2) | 0.023 (2) | 0.003 (2) |
| C19 | 0.104 (5) | 0.032 (2) | 0.054 (4) | 0.000 (3) | 0.052 (4) | 0.006 (2) |
| C20 | 0.073 (3) | 0.073 (3) | 0.053 (3) | −0.018 (2) | 0.023 (2) | 0.003 (2) |
| Br1—C2 | 1.872 (4) | C5—C6 | 1.386 (7) |
| Br2—C13 | 1.887 (4) | C5—C10 | 1.401 (6) |
| O1—C4 | 1.368 (5) | C6—C7 | 1.363 (7) |
| O1—C5 | 1.388 (5) | C6—H6A | 0.9300 |
| O2—C11 | 1.342 (5) | C7—C8 | 1.373 (8) |
| O2—C9 | 1.412 (6) | C7—H7A | 0.9300 |
| O3—C1 | 1.324 (6) | C8—C9 | 1.384 (7) |
| O3—C15 | 1.443 (6) | C8—H8A | 0.9300 |
| O4—C3 | 1.337 (5) | C9—C10 | 1.374 (6) |
| O4—C16 | 1.411 (6) | C10—C17 | 1.496 (7) |
| O5—C17 | 1.297 (6) | C12—C13 | 1.376 (6) |
| O5—C18 | 1.433 (8) | C13—C14 | 1.356 (6) |
| O6—C17 | 1.213 (7) | C15—H15A | 0.9600 |
| O7—C12 | 1.336 (5) | C15—H15B | 0.9600 |
| O7—C19 | 1.464 (6) | C15—H15C | 0.9600 |
| O8—C14 | 1.341 (5) | C16—H16A | 0.9600 |
| O8—C20 | 1.442 (8) | C16—H16B | 0.9600 |
| N1—C1 | 1.327 (6) | C16—H16C | 0.9600 |
| N1—C4 | 1.335 (6) | C18—H18A | 0.9600 |
| N2—C4 | 1.312 (6) | C18—H18B | 0.9600 |
| N2—C3 | 1.328 (5) | C18—H18C | 0.9600 |
| N3—C11 | 1.308 (6) | C19—H19A | 0.9600 |
| N3—C12 | 1.339 (6) | C19—H19B | 0.9600 |
| N4—C11 | 1.323 (5) | C19—H19C | 0.9600 |
| N4—C14 | 1.334 (6) | C20—H20A | 0.9600 |
| C1—C2 | 1.383 (6) | C20—H20B | 0.9600 |
| C2—C3 | 1.380 (6) | C20—H20C | 0.9600 |
| C4—O1—C5 | 117.6 (3) | N4—C11—O2 | 118.2 (4) |
| C11—O2—C9 | 118.4 (3) | O7—C12—N3 | 119.6 (4) |
| C1—O3—C15 | 118.4 (4) | O7—C12—C13 | 118.1 (4) |
| C3—O4—C16 | 117.6 (4) | N3—C12—C13 | 122.3 (4) |
| C17—O5—C18 | 119.2 (5) | C14—C13—C12 | 117.1 (4) |
| C12—O7—C19 | 118.0 (4) | C14—C13—Br2 | 122.1 (3) |
| C14—O8—C20 | 118.4 (5) | C12—C13—Br2 | 120.8 (4) |
| C1—N1—C4 | 113.8 (4) | N4—C14—O8 | 118.8 (4) |
| C4—N2—C3 | 114.4 (4) | N4—C14—C13 | 122.2 (4) |
| C11—N3—C12 | 114.7 (4) | O8—C14—C13 | 119.0 (4) |
| C11—N4—C14 | 115.3 (4) | O3—C15—H15A | 109.5 |
| O3—C1—N1 | 119.6 (4) | O3—C15—H15B | 109.5 |
| O3—C1—C2 | 117.7 (4) | H15A—C15—H15B | 109.5 |
| N1—C1—C2 | 122.4 (4) | O3—C15—H15C | 109.5 |
| C3—C2—C1 | 116.9 (4) | H15A—C15—H15C | 109.5 |
| C3—C2—Br1 | 121.9 (3) | H15B—C15—H15C | 109.5 |
| C1—C2—Br1 | 121.1 (3) | O4—C16—H16A | 109.5 |
| N2—C3—O4 | 118.6 (4) | O4—C16—H16B | 109.5 |
| N2—C3—C2 | 122.4 (4) | H16A—C16—H16B | 109.5 |
| O4—C3—C2 | 119.0 (4) | O4—C16—H16C | 109.5 |
| N2—C4—N1 | 129.8 (4) | H16A—C16—H16C | 109.5 |
| N2—C4—O1 | 117.6 (4) | H16B—C16—H16C | 109.5 |
| N1—C4—O1 | 112.6 (4) | O6—C17—O5 | 123.8 (5) |
| C6—C5—O1 | 117.0 (4) | O6—C17—C10 | 124.0 (5) |
| C6—C5—C10 | 120.5 (4) | O5—C17—C10 | 112.2 (4) |
| O1—C5—C10 | 122.5 (4) | O5—C18—H18A | 109.5 |
| C7—C6—C5 | 120.6 (5) | O5—C18—H18B | 109.5 |
| C7—C6—H6A | 119.7 | H18A—C18—H18B | 109.5 |
| C5—C6—H6A | 119.7 | O5—C18—H18C | 109.5 |
| C6—C7—C8 | 120.0 (5) | H18A—C18—H18C | 109.5 |
| C6—C7—H7A | 120.0 | H18B—C18—H18C | 109.5 |
| C8—C7—H7A | 120.0 | O7—C19—H19A | 109.5 |
| C7—C8—C9 | 119.3 (4) | O7—C19—H19B | 109.5 |
| C7—C8—H8A | 120.3 | H19A—C19—H19B | 109.5 |
| C9—C8—H8A | 120.3 | O7—C19—H19C | 109.5 |
| C10—C9—C8 | 122.3 (4) | H19A—C19—H19C | 109.5 |
| C10—C9—O2 | 121.0 (4) | H19B—C19—H19C | 109.5 |
| C8—C9—O2 | 116.7 (4) | O8—C20—H20A | 109.5 |
| C9—C10—C5 | 117.2 (4) | O8—C20—H20B | 109.5 |
| C9—C10—C17 | 121.5 (4) | H20A—C20—H20B | 109.5 |
| C5—C10—C17 | 121.2 (4) | O8—C20—H20C | 109.5 |
| N3—C11—N4 | 128.3 (4) | H20A—C20—H20C | 109.5 |
| N3—C11—O2 | 113.5 (3) | H20B—C20—H20C | 109.5 |
| C15—O3—C1—N1 | −4.0 (8) | C8—C9—C10—C17 | −179.4 (4) |
| C15—O3—C1—C2 | −177.8 (6) | O2—C9—C10—C17 | −1.0 (6) |
| C4—N1—C1—O3 | −179.2 (5) | C6—C5—C10—C9 | 3.4 (6) |
| C4—N1—C1—C2 | −5.6 (7) | O1—C5—C10—C9 | 179.2 (4) |
| O3—C1—C2—C3 | 178.6 (5) | C6—C5—C10—C17 | −179.9 (4) |
| N1—C1—C2—C3 | 4.9 (8) | O1—C5—C10—C17 | −4.1 (6) |
| O3—C1—C2—Br1 | −5.6 (7) | C12—N3—C11—N4 | 1.2 (7) |
| N1—C1—C2—Br1 | −179.2 (4) | C12—N3—C11—O2 | −179.2 (4) |
| C4—N2—C3—O4 | 177.9 (5) | C14—N4—C11—N3 | −2.2 (7) |
| C4—N2—C3—C2 | −1.0 (7) | C14—N4—C11—O2 | 178.3 (4) |
| C16—O4—C3—N2 | −2.1 (7) | C9—O2—C11—N3 | 178.6 (4) |
| C16—O4—C3—C2 | 176.8 (5) | C9—O2—C11—N4 | −1.8 (6) |
| C1—C2—C3—N2 | −1.4 (8) | C19—O7—C12—N3 | −0.9 (7) |
| Br1—C2—C3—N2 | −177.1 (4) | C19—O7—C12—C13 | −180.0 (5) |
| C1—C2—C3—O4 | 179.8 (5) | C11—N3—C12—O7 | −179.3 (4) |
| Br1—C2—C3—O4 | 4.0 (7) | C11—N3—C12—C13 | −0.3 (6) |
| C3—N2—C4—N1 | 0.0 (7) | O7—C12—C13—C14 | 179.5 (4) |
| C3—N2—C4—O1 | 179.8 (4) | N3—C12—C13—C14 | 0.4 (6) |
| C1—N1—C4—N2 | 3.2 (8) | O7—C12—C13—Br2 | 1.1 (5) |
| C1—N1—C4—O1 | −176.5 (4) | N3—C12—C13—Br2 | −178.0 (3) |
| C5—O1—C4—N2 | 12.3 (6) | C11—N4—C14—O8 | −179.9 (4) |
| C5—O1—C4—N1 | −167.9 (4) | C11—N4—C14—C13 | 2.2 (6) |
| C4—O1—C5—C6 | −121.7 (5) | C20—O8—C14—N4 | −6.1 (6) |
| C4—O1—C5—C10 | 62.4 (5) | C20—O8—C14—C13 | 171.9 (5) |
| O1—C5—C6—C7 | −177.4 (4) | C12—C13—C14—N4 | −1.4 (6) |
| C10—C5—C6—C7 | −1.4 (7) | Br2—C13—C14—N4 | 177.0 (3) |
| C5—C6—C7—C8 | −1.4 (8) | C12—C13—C14—O8 | −179.4 (4) |
| C6—C7—C8—C9 | 2.1 (8) | Br2—C13—C14—O8 | −1.0 (5) |
| C7—C8—C9—C10 | 0.1 (7) | C18—O5—C17—O6 | −2.0 (9) |
| C7—C8—C9—O2 | −178.4 (4) | C18—O5—C17—C10 | 176.5 (5) |
| C11—O2—C9—C10 | 72.1 (5) | C9—C10—C17—O6 | 39.9 (7) |
| C11—O2—C9—C8 | −109.4 (5) | C5—C10—C17—O6 | −136.6 (6) |
| C8—C9—C10—C5 | −2.8 (6) | C9—C10—C17—O5 | −138.5 (5) |
| O2—C9—C10—C5 | 175.7 (4) | C5—C10—C17—O5 | 44.9 (6) |