Literature DB >> 21588067

Methyl 2,6-bis-[(5-bromo-4,6-dimeth-oxy-pyrimidin-2-yl)-oxy]benzoate.

Hoong-Kun Fun, Jia Hao Goh, Sankappa Rai, Arun M Isloor, Prakash Shetty.   

Abstract

In the title compound, C(20)H(18)Br(2)N(4)O(8), the inter-planar angle of the pyrimidine rings is 75.1 (2)°. The central benzene ring is inclined at inter-planar angles of 66.5 (2) and 71.9 (2)° with respect to the two pyrimidine rings. In the crystal structure, adjacent mol-ecules are connected into two-mol-ecule-thick arrays parallel to the bc plane via short Br⋯Br [3.5328 (12) Å] and Br⋯O [3.206 (3) and 3.301 (4) Å] inter-actions. A weak inter-molecular π-π aromatic stacking inter-action [centroid-centroid distance = 3.526 (3) Å] is also observed.

Entities:  

Year:  2010        PMID: 21588067      PMCID: PMC3006963          DOI: 10.1107/S1600536810024724

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of the title compound, see: Koichiro et al. (1988 ▶); He et al. (2007 ▶); Li et al. (2006 ▶); Gerorge (1983 ▶). For closely related structures, see: Fun et al. (2010 ▶); Li & Luo (2006 ▶).

Experimental

Crystal data

C20H18Br2N4O8 M = 602.20 Monoclinic, a = 29.972 (5) Å b = 8.1392 (12) Å c = 23.061 (3) Å β = 123.120 (3)° V = 4711.8 (12) Å3 Z = 8 Mo Kα radiation μ = 3.49 mm−1 T = 293 K 0.20 × 0.18 × 0.14 mm

Data collection

Bruker APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.549, T max = 0.640 25204 measured reflections 8438 independent reflections 4458 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.254 S = 1.02 8438 reflections 306 parameters H-atom parameters constrained Δρmax = 1.32 e Å−3 Δρmin = −1.56 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810024724/hb5519sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024724/hb5519Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H18Br2N4O8F(000) = 2400
Mr = 602.20Dx = 1.698 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2909 reflections
a = 29.972 (5) Åθ = 2.7–25.5°
b = 8.1392 (12) ŵ = 3.49 mm1
c = 23.061 (3) ÅT = 293 K
β = 123.120 (3)°Block, brown
V = 4711.8 (12) Å30.20 × 0.18 × 0.14 mm
Z = 8
Bruker APEXII DUO CCD diffractometer8438 independent reflections
Radiation source: fine-focus sealed tube4458 reflections with I > 2σ(I)
graphiteRint = 0.066
φ and ω scansθmax = 32.5°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −45→45
Tmin = 0.549, Tmax = 0.640k = −12→12
25204 measured reflectionsl = −34→34
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.254H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.1449P)2] where P = (Fo2 + 2Fc2)/3
8438 reflections(Δ/σ)max = 0.001
306 parametersΔρmax = 1.32 e Å3
0 restraintsΔρmin = −1.55 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.30639 (2)0.57188 (7)0.09822 (4)0.0594 (2)
Br20.08330 (2)0.91910 (6)0.40182 (3)0.04252 (17)
O10.11548 (12)0.9112 (3)0.04513 (18)0.0337 (7)
O20.05069 (15)0.5753 (3)0.15875 (19)0.0372 (7)
O30.28301 (15)0.9322 (4)0.0904 (3)0.0563 (11)
O40.20456 (14)0.4280 (4)0.0769 (2)0.0459 (9)
O50.16295 (15)0.8884 (5)0.1855 (2)0.0568 (10)
O60.16019 (17)0.6258 (6)0.2086 (3)0.0729 (14)
O70.07542 (16)0.5580 (4)0.3707 (2)0.0422 (8)
O80.06803 (15)1.0608 (4)0.27029 (19)0.0409 (8)
N10.19889 (16)0.9262 (4)0.0691 (2)0.0377 (9)
N20.15798 (13)0.6659 (4)0.0595 (2)0.0324 (8)
N30.06285 (16)0.5635 (4)0.2625 (2)0.0334 (8)
N40.05992 (14)0.8206 (4)0.21251 (19)0.0320 (7)
C10.24118 (18)0.8474 (6)0.0787 (3)0.0378 (10)
C20.24567 (18)0.6781 (6)0.0836 (3)0.0389 (10)
C30.20209 (17)0.5919 (5)0.0728 (3)0.0352 (9)
C40.15971 (16)0.8269 (5)0.0587 (2)0.0311 (9)
C50.07637 (16)0.8238 (5)0.0466 (2)0.0314 (9)
C60.02573 (18)0.8241 (6)−0.0133 (3)0.0410 (11)
H6A0.01980.8777−0.05260.049*
C7−0.01538 (19)0.7465 (6)−0.0153 (3)0.0472 (12)
H7A−0.04940.7494−0.05540.057*
C8−0.00662 (19)0.6642 (6)0.0420 (3)0.0410 (11)
H8A−0.03430.60820.04050.049*
C90.04382 (18)0.6656 (5)0.1021 (2)0.0337 (9)
C100.08581 (17)0.7468 (5)0.1067 (2)0.0314 (8)
C110.05805 (17)0.6583 (5)0.2136 (2)0.0310 (8)
C120.06957 (17)0.6433 (5)0.3175 (2)0.0315 (8)
C130.07150 (16)0.8121 (5)0.3220 (2)0.0318 (9)
C140.06590 (16)0.8963 (5)0.2677 (2)0.0300 (8)
C150.2797 (3)1.1092 (7)0.0878 (5)0.068 (2)
H15A0.31051.15410.09090.101*
H15B0.27801.14860.12590.101*
H15C0.24821.14280.04500.101*
C160.1604 (2)0.3438 (6)0.0691 (4)0.0586 (17)
H16A0.16530.22770.06750.088*
H16B0.12850.37790.02690.088*
H16C0.15750.36860.10760.088*
C170.1402 (2)0.7456 (6)0.1719 (3)0.0437 (11)
C180.2141 (3)0.9103 (8)0.2484 (4)0.0720 (14)
H18A0.22141.02560.25740.108*
H18B0.24090.86020.24380.108*
H18C0.21410.86000.28600.108*
C190.0734 (3)0.3785 (6)0.3658 (4)0.0590 (16)
H19A0.06950.33360.40130.089*
H19B0.10570.33820.37170.089*
H19C0.04360.34590.32120.089*
C200.0691 (3)1.1479 (9)0.2166 (4)0.0720 (14)
H20A0.07321.26340.22670.108*
H20B0.03641.12890.17290.108*
H20C0.09851.10930.21450.108*
U11U22U33U12U13U23
Br10.0381 (3)0.0527 (3)0.0907 (5)0.0122 (2)0.0374 (3)0.0068 (3)
Br20.0570 (3)0.0430 (3)0.0376 (3)−0.0108 (2)0.0324 (2)−0.0123 (2)
O10.0330 (14)0.0321 (15)0.0452 (19)0.0082 (11)0.0272 (14)0.0116 (13)
O20.058 (2)0.0298 (15)0.0372 (18)−0.0026 (13)0.0347 (17)−0.0028 (13)
O30.0390 (18)0.0438 (19)0.096 (3)−0.0040 (14)0.043 (2)−0.0001 (19)
O40.0391 (17)0.0321 (16)0.068 (3)0.0026 (12)0.0305 (18)−0.0035 (16)
O50.048 (2)0.067 (2)0.040 (2)−0.0182 (17)0.0144 (18)0.0008 (19)
O60.057 (2)0.075 (3)0.057 (3)0.013 (2)0.012 (2)0.024 (2)
O70.062 (2)0.0343 (17)0.040 (2)−0.0001 (14)0.0346 (18)0.0038 (14)
O80.056 (2)0.0282 (15)0.038 (2)0.0019 (13)0.0257 (17)−0.0022 (14)
N10.0375 (19)0.0338 (19)0.048 (2)0.0027 (14)0.0270 (19)0.0063 (17)
N20.0304 (16)0.0305 (17)0.036 (2)0.0020 (13)0.0180 (15)−0.0021 (15)
N30.0444 (19)0.0308 (18)0.035 (2)−0.0017 (14)0.0279 (18)−0.0015 (15)
N40.0391 (18)0.0312 (17)0.0285 (19)0.0000 (14)0.0202 (16)0.0004 (15)
C10.035 (2)0.038 (2)0.042 (3)0.0017 (17)0.022 (2)0.000 (2)
C20.035 (2)0.037 (2)0.046 (3)0.0058 (17)0.023 (2)−0.001 (2)
C30.034 (2)0.031 (2)0.040 (3)0.0046 (15)0.0196 (19)0.0021 (18)
C40.0302 (18)0.037 (2)0.028 (2)0.0081 (15)0.0168 (17)0.0035 (18)
C50.0341 (19)0.035 (2)0.032 (2)0.0063 (16)0.0225 (18)0.0031 (18)
C60.037 (2)0.052 (3)0.037 (3)0.0065 (19)0.022 (2)0.011 (2)
C70.033 (2)0.060 (3)0.040 (3)0.002 (2)0.015 (2)0.000 (2)
C80.038 (2)0.049 (3)0.038 (3)−0.0044 (19)0.022 (2)−0.006 (2)
C90.044 (2)0.031 (2)0.036 (2)0.0029 (16)0.028 (2)−0.0070 (18)
C100.038 (2)0.031 (2)0.029 (2)0.0024 (16)0.0204 (18)−0.0012 (17)
C110.039 (2)0.0274 (19)0.033 (2)−0.0021 (15)0.0233 (19)−0.0040 (17)
C120.0352 (19)0.035 (2)0.030 (2)−0.0022 (16)0.0214 (18)0.0028 (18)
C130.0311 (18)0.037 (2)0.032 (2)−0.0015 (15)0.0199 (18)−0.0054 (18)
C140.0306 (18)0.0305 (19)0.030 (2)−0.0004 (14)0.0169 (17)−0.0062 (17)
C150.065 (4)0.039 (3)0.109 (6)−0.011 (2)0.055 (4)−0.006 (3)
C160.045 (3)0.037 (3)0.093 (5)−0.001 (2)0.037 (3)−0.002 (3)
C170.042 (2)0.055 (3)0.033 (3)0.000 (2)0.020 (2)−0.004 (2)
C180.073 (3)0.073 (3)0.053 (3)−0.018 (2)0.023 (2)0.003 (2)
C190.104 (5)0.032 (2)0.054 (4)0.000 (3)0.052 (4)0.006 (2)
C200.073 (3)0.073 (3)0.053 (3)−0.018 (2)0.023 (2)0.003 (2)
Br1—C21.872 (4)C5—C61.386 (7)
Br2—C131.887 (4)C5—C101.401 (6)
O1—C41.368 (5)C6—C71.363 (7)
O1—C51.388 (5)C6—H6A0.9300
O2—C111.342 (5)C7—C81.373 (8)
O2—C91.412 (6)C7—H7A0.9300
O3—C11.324 (6)C8—C91.384 (7)
O3—C151.443 (6)C8—H8A0.9300
O4—C31.337 (5)C9—C101.374 (6)
O4—C161.411 (6)C10—C171.496 (7)
O5—C171.297 (6)C12—C131.376 (6)
O5—C181.433 (8)C13—C141.356 (6)
O6—C171.213 (7)C15—H15A0.9600
O7—C121.336 (5)C15—H15B0.9600
O7—C191.464 (6)C15—H15C0.9600
O8—C141.341 (5)C16—H16A0.9600
O8—C201.442 (8)C16—H16B0.9600
N1—C11.327 (6)C16—H16C0.9600
N1—C41.335 (6)C18—H18A0.9600
N2—C41.312 (6)C18—H18B0.9600
N2—C31.328 (5)C18—H18C0.9600
N3—C111.308 (6)C19—H19A0.9600
N3—C121.339 (6)C19—H19B0.9600
N4—C111.323 (5)C19—H19C0.9600
N4—C141.334 (6)C20—H20A0.9600
C1—C21.383 (6)C20—H20B0.9600
C2—C31.380 (6)C20—H20C0.9600
C4—O1—C5117.6 (3)N4—C11—O2118.2 (4)
C11—O2—C9118.4 (3)O7—C12—N3119.6 (4)
C1—O3—C15118.4 (4)O7—C12—C13118.1 (4)
C3—O4—C16117.6 (4)N3—C12—C13122.3 (4)
C17—O5—C18119.2 (5)C14—C13—C12117.1 (4)
C12—O7—C19118.0 (4)C14—C13—Br2122.1 (3)
C14—O8—C20118.4 (5)C12—C13—Br2120.8 (4)
C1—N1—C4113.8 (4)N4—C14—O8118.8 (4)
C4—N2—C3114.4 (4)N4—C14—C13122.2 (4)
C11—N3—C12114.7 (4)O8—C14—C13119.0 (4)
C11—N4—C14115.3 (4)O3—C15—H15A109.5
O3—C1—N1119.6 (4)O3—C15—H15B109.5
O3—C1—C2117.7 (4)H15A—C15—H15B109.5
N1—C1—C2122.4 (4)O3—C15—H15C109.5
C3—C2—C1116.9 (4)H15A—C15—H15C109.5
C3—C2—Br1121.9 (3)H15B—C15—H15C109.5
C1—C2—Br1121.1 (3)O4—C16—H16A109.5
N2—C3—O4118.6 (4)O4—C16—H16B109.5
N2—C3—C2122.4 (4)H16A—C16—H16B109.5
O4—C3—C2119.0 (4)O4—C16—H16C109.5
N2—C4—N1129.8 (4)H16A—C16—H16C109.5
N2—C4—O1117.6 (4)H16B—C16—H16C109.5
N1—C4—O1112.6 (4)O6—C17—O5123.8 (5)
C6—C5—O1117.0 (4)O6—C17—C10124.0 (5)
C6—C5—C10120.5 (4)O5—C17—C10112.2 (4)
O1—C5—C10122.5 (4)O5—C18—H18A109.5
C7—C6—C5120.6 (5)O5—C18—H18B109.5
C7—C6—H6A119.7H18A—C18—H18B109.5
C5—C6—H6A119.7O5—C18—H18C109.5
C6—C7—C8120.0 (5)H18A—C18—H18C109.5
C6—C7—H7A120.0H18B—C18—H18C109.5
C8—C7—H7A120.0O7—C19—H19A109.5
C7—C8—C9119.3 (4)O7—C19—H19B109.5
C7—C8—H8A120.3H19A—C19—H19B109.5
C9—C8—H8A120.3O7—C19—H19C109.5
C10—C9—C8122.3 (4)H19A—C19—H19C109.5
C10—C9—O2121.0 (4)H19B—C19—H19C109.5
C8—C9—O2116.7 (4)O8—C20—H20A109.5
C9—C10—C5117.2 (4)O8—C20—H20B109.5
C9—C10—C17121.5 (4)H20A—C20—H20B109.5
C5—C10—C17121.2 (4)O8—C20—H20C109.5
N3—C11—N4128.3 (4)H20A—C20—H20C109.5
N3—C11—O2113.5 (3)H20B—C20—H20C109.5
C15—O3—C1—N1−4.0 (8)C8—C9—C10—C17−179.4 (4)
C15—O3—C1—C2−177.8 (6)O2—C9—C10—C17−1.0 (6)
C4—N1—C1—O3−179.2 (5)C6—C5—C10—C93.4 (6)
C4—N1—C1—C2−5.6 (7)O1—C5—C10—C9179.2 (4)
O3—C1—C2—C3178.6 (5)C6—C5—C10—C17−179.9 (4)
N1—C1—C2—C34.9 (8)O1—C5—C10—C17−4.1 (6)
O3—C1—C2—Br1−5.6 (7)C12—N3—C11—N41.2 (7)
N1—C1—C2—Br1−179.2 (4)C12—N3—C11—O2−179.2 (4)
C4—N2—C3—O4177.9 (5)C14—N4—C11—N3−2.2 (7)
C4—N2—C3—C2−1.0 (7)C14—N4—C11—O2178.3 (4)
C16—O4—C3—N2−2.1 (7)C9—O2—C11—N3178.6 (4)
C16—O4—C3—C2176.8 (5)C9—O2—C11—N4−1.8 (6)
C1—C2—C3—N2−1.4 (8)C19—O7—C12—N3−0.9 (7)
Br1—C2—C3—N2−177.1 (4)C19—O7—C12—C13−180.0 (5)
C1—C2—C3—O4179.8 (5)C11—N3—C12—O7−179.3 (4)
Br1—C2—C3—O44.0 (7)C11—N3—C12—C13−0.3 (6)
C3—N2—C4—N10.0 (7)O7—C12—C13—C14179.5 (4)
C3—N2—C4—O1179.8 (4)N3—C12—C13—C140.4 (6)
C1—N1—C4—N23.2 (8)O7—C12—C13—Br21.1 (5)
C1—N1—C4—O1−176.5 (4)N3—C12—C13—Br2−178.0 (3)
C5—O1—C4—N212.3 (6)C11—N4—C14—O8−179.9 (4)
C5—O1—C4—N1−167.9 (4)C11—N4—C14—C132.2 (6)
C4—O1—C5—C6−121.7 (5)C20—O8—C14—N4−6.1 (6)
C4—O1—C5—C1062.4 (5)C20—O8—C14—C13171.9 (5)
O1—C5—C6—C7−177.4 (4)C12—C13—C14—N4−1.4 (6)
C10—C5—C6—C7−1.4 (7)Br2—C13—C14—N4177.0 (3)
C5—C6—C7—C8−1.4 (8)C12—C13—C14—O8−179.4 (4)
C6—C7—C8—C92.1 (8)Br2—C13—C14—O8−1.0 (5)
C7—C8—C9—C100.1 (7)C18—O5—C17—O6−2.0 (9)
C7—C8—C9—O2−178.4 (4)C18—O5—C17—C10176.5 (5)
C11—O2—C9—C1072.1 (5)C9—C10—C17—O639.9 (7)
C11—O2—C9—C8−109.4 (5)C5—C10—C17—O6−136.6 (6)
C8—C9—C10—C5−2.8 (6)C9—C10—C17—O5−138.5 (5)
O2—C9—C10—C5175.7 (4)C5—C10—C17—O544.9 (6)
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