Literature DB >> 21588058

1-Diphenyl-methyl-4-ethyl-piperazine-1,4-diium dichloride.

Hong-Yun Qiao, Su-Hai Xu, He-Xia Jiang.   

Abstract

In the title compound, C(19)H(26)N(2) (2+)·2Cl(-), the piperazinediium ring exhibits a chair conformation. The dihedral angle between the two benzene ring planes is 76.45 (13)°. Both amine-group H atoms participate in hydrogen bonding with the two Cl atoms.

Entities:  

Year:  2010        PMID: 21588058      PMCID: PMC3007029          DOI: 10.1107/S1600536810024530

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was obtained in our search for a strong anti-Helicobacter pylori secondary metabolite. For general background to H. pylori, see: Gebert et al. (2003 ▶); Li et al. (2007 ▶); Moran & Upton (1986 ▶). For bond lengths and angles in related structures, see: Raves et al. (1992 ▶); Ilangovan et al. (2007 ▶).

Experimental

Crystal data

C19H26N2 2+·2Cl M = 353.32 Monoclinic, a = 15.069 (3) Å b = 7.2950 (15) Å c = 18.565 (4) Å β = 106.35 (3)° V = 1958.3 (7) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.907, T max = 0.968 3684 measured reflections 3542 independent reflections 2101 reflections with I > 2σ(I) R int = 0.028 200 standard reflections every 3 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.157 S = 1.03 3542 reflections 216 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810024530/zq2043sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024530/zq2043Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H26N22+·2ClF(000) = 752
Mr = 353.32Dx = 1.198 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 15.069 (3) Åθ = 9–12°
b = 7.2950 (15) ŵ = 0.33 mm1
c = 18.565 (4) ÅT = 293 K
β = 106.35 (3)°Block, yellow
V = 1958.3 (7) Å30.30 × 0.20 × 0.10 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer2101 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.028
graphiteθmax = 25.3°, θmin = 1.4°
ω/2θ scanh = 0→18
Absorption correction: ψ scan (North et al., 1968)k = 0→8
Tmin = 0.907, Tmax = 0.968l = −22→21
3684 measured reflections200 standard reflections every 3 reflections
3542 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.157H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.065P)2 + 0.1129P] where P = (Fo2 + 2Fc2)/3
3542 reflections(Δ/σ)max < 0.001
216 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6307 (3)0.4082 (10)0.0245 (3)0.0936 (17)
H1A0.60520.4038−0.02730.112*
C20.6600 (4)0.2480 (8)0.0637 (3)0.0916 (16)
H2A0.65490.13690.03830.110*
C30.6968 (3)0.2534 (6)0.1407 (2)0.0710 (13)
H3A0.71580.14590.16760.085*
C40.7053 (2)0.4206 (5)0.17766 (19)0.0473 (9)
C50.6766 (3)0.5794 (6)0.1372 (2)0.0576 (10)
H5A0.68300.69150.16190.069*
C60.6387 (3)0.5729 (8)0.0607 (3)0.0816 (14)
H6A0.61870.67990.03380.098*
C70.7408 (2)0.4406 (4)0.26239 (18)0.0404 (8)
H7A0.76270.56720.27190.049*
C80.6648 (2)0.4179 (5)0.30018 (19)0.0444 (9)
C90.6408 (3)0.5678 (5)0.3367 (2)0.0572 (10)
H9A0.67470.67580.34130.069*
C100.5665 (3)0.5563 (7)0.3663 (2)0.0754 (13)
H10A0.55060.65780.39030.090*
C110.5164 (3)0.4010 (8)0.3610 (2)0.0766 (14)
H11A0.46640.39570.38100.092*
C120.5400 (3)0.2510 (7)0.3258 (2)0.0729 (13)
H12A0.50560.14370.32220.087*
C130.6142 (3)0.2571 (6)0.2956 (2)0.0606 (11)
H13A0.63000.15410.27240.073*
C140.9003 (2)0.3678 (4)0.26354 (17)0.0410 (8)
H14A0.91480.49700.27210.049*
H14B0.88010.34760.20970.049*
C150.9859 (2)0.2566 (5)0.29714 (17)0.0432 (9)
H15A0.97270.12810.28540.052*
H15B1.03420.29410.27510.052*
C160.9435 (2)0.2275 (5)0.41299 (18)0.0458 (9)
H16A0.96380.24680.46690.055*
H16B0.92950.09830.40390.055*
C170.8575 (2)0.3387 (5)0.37957 (17)0.0464 (9)
H17A0.80930.29960.40150.056*
H17B0.87050.46680.39210.056*
C181.1074 (3)0.1783 (5)0.4132 (2)0.0553 (10)
H18A1.15050.20610.38450.066*
H18B1.09500.04760.40910.066*
C191.1516 (3)0.2259 (6)0.4946 (2)0.0720 (13)
H19A1.20730.15610.51320.108*
H19B1.10950.19750.52340.108*
H19C1.16600.35430.49890.108*
Cl11.05758 (8)0.68359 (12)0.40163 (5)0.0639 (4)
Cl20.80657 (8)−0.09301 (13)0.27873 (7)0.0756 (4)
H1B0.807 (2)0.193 (5)0.2866 (18)0.059 (11)*
H2B1.033 (2)0.392 (5)0.3885 (19)0.056 (11)*
N10.82357 (19)0.3192 (4)0.29633 (14)0.0370 (7)
N21.0189 (2)0.2800 (4)0.37993 (15)0.0401 (7)
U11U22U33U12U13U23
C10.082 (4)0.141 (5)0.045 (3)−0.003 (4)−0.003 (2)−0.009 (3)
C20.105 (4)0.097 (4)0.064 (3)−0.014 (3)0.010 (3)−0.028 (3)
C30.095 (3)0.062 (3)0.047 (3)−0.010 (3)0.005 (2)−0.012 (2)
C40.044 (2)0.054 (2)0.044 (2)−0.0073 (19)0.0123 (17)−0.0052 (19)
C50.057 (3)0.061 (3)0.052 (2)0.004 (2)0.011 (2)0.006 (2)
C60.078 (3)0.100 (4)0.059 (3)0.013 (3)0.007 (3)0.012 (3)
C70.049 (2)0.0257 (17)0.047 (2)−0.0090 (16)0.0137 (17)−0.0047 (15)
C80.044 (2)0.045 (2)0.044 (2)−0.0045 (18)0.0120 (17)−0.0011 (17)
C90.067 (3)0.053 (2)0.058 (2)−0.001 (2)0.027 (2)−0.0058 (19)
C100.081 (3)0.085 (4)0.071 (3)0.010 (3)0.039 (3)−0.010 (3)
C110.062 (3)0.108 (4)0.064 (3)−0.001 (3)0.026 (2)0.009 (3)
C120.060 (3)0.086 (3)0.076 (3)−0.028 (3)0.024 (2)0.003 (3)
C130.064 (3)0.062 (3)0.057 (2)−0.012 (2)0.019 (2)−0.005 (2)
C140.051 (2)0.0358 (19)0.0404 (19)−0.0036 (17)0.0191 (17)−0.0005 (15)
C150.060 (2)0.0354 (18)0.0395 (19)−0.0084 (17)0.0220 (17)−0.0077 (15)
C160.061 (2)0.043 (2)0.0389 (19)−0.0094 (19)0.0220 (18)−0.0034 (16)
C170.055 (2)0.050 (2)0.039 (2)−0.0078 (19)0.0220 (17)−0.0059 (17)
C180.059 (2)0.040 (2)0.063 (2)0.008 (2)0.012 (2)−0.0043 (19)
C190.068 (3)0.077 (3)0.064 (3)0.011 (2)0.005 (2)−0.001 (2)
Cl10.1106 (9)0.0332 (5)0.0560 (6)−0.0187 (5)0.0369 (6)−0.0078 (4)
Cl20.0951 (9)0.0287 (5)0.0988 (9)−0.0145 (5)0.0205 (7)−0.0052 (5)
N10.0494 (18)0.0276 (14)0.0358 (15)−0.0083 (14)0.0151 (13)−0.0055 (12)
N20.0539 (19)0.0269 (16)0.0408 (17)−0.0027 (14)0.0155 (14)−0.0052 (13)
C1—C61.366 (7)C13—H13A0.9300
C1—C21.382 (7)C14—N11.493 (4)
C1—H1A0.9300C14—C151.502 (4)
C2—C31.381 (6)C14—H14A0.9700
C2—H2A0.9300C14—H14B0.9700
C3—C41.388 (5)C15—N21.486 (4)
C3—H3A0.9300C15—H15A0.9700
C4—C51.382 (5)C15—H15B0.9700
C4—C71.519 (4)C16—N21.486 (4)
C5—C61.373 (5)C16—C171.506 (5)
C5—H5A0.9300C16—H16A0.9700
C6—H6A0.9300C16—H16B0.9700
C7—C81.512 (5)C17—N11.492 (4)
C7—N11.514 (4)C17—H17A0.9700
C7—H7A0.9800C17—H17B0.9700
C8—C91.387 (5)C18—N21.499 (4)
C8—C131.388 (5)C18—C191.510 (5)
C9—C101.382 (5)C18—H18A0.9700
C9—H9A0.9300C18—H18B0.9700
C10—C111.350 (6)C19—H19A0.9600
C10—H10A0.9300C19—H19B0.9600
C11—C121.371 (6)C19—H19C0.9600
C11—H11A0.9300N1—H1B0.96 (4)
C12—C131.386 (5)N2—H2B0.85 (4)
C12—H12A0.9300
C6—C1—C2120.9 (4)N1—C14—H14B109.2
C6—C1—H1A119.6C15—C14—H14B109.2
C2—C1—H1A119.6H14A—C14—H14B107.9
C3—C2—C1119.8 (5)N2—C15—C14111.4 (3)
C3—C2—H2A120.1N2—C15—H15A109.3
C1—C2—H2A120.1C14—C15—H15A109.3
C2—C3—C4119.4 (4)N2—C15—H15B109.3
C2—C3—H3A120.3C14—C15—H15B109.3
C4—C3—H3A120.3H15A—C15—H15B108.0
C5—C4—C3119.8 (3)N2—C16—C17111.1 (3)
C5—C4—C7116.6 (3)N2—C16—H16A109.4
C3—C4—C7123.5 (3)C17—C16—H16A109.4
C6—C5—C4120.6 (4)N2—C16—H16B109.4
C6—C5—H5A119.7C17—C16—H16B109.4
C4—C5—H5A119.7H16A—C16—H16B108.0
C1—C6—C5119.5 (5)N1—C17—C16112.3 (3)
C1—C6—H6A120.2N1—C17—H17A109.1
C5—C6—H6A120.2C16—C17—H17A109.1
C8—C7—N1112.7 (3)N1—C17—H17B109.1
C8—C7—C4112.2 (3)C16—C17—H17B109.1
N1—C7—C4112.6 (3)H17A—C17—H17B107.9
C8—C7—H7A106.3N2—C18—C19112.9 (3)
N1—C7—H7A106.3N2—C18—H18A109.0
C4—C7—H7A106.3C19—C18—H18A109.0
C9—C8—C13118.8 (3)N2—C18—H18B109.0
C9—C8—C7118.4 (3)C19—C18—H18B109.0
C13—C8—C7122.6 (3)H18A—C18—H18B107.8
C10—C9—C8119.9 (4)C18—C19—H19A109.5
C10—C9—H9A120.1C18—C19—H19B109.5
C8—C9—H9A120.1H19A—C19—H19B109.5
C11—C10—C9121.4 (4)C18—C19—H19C109.5
C11—C10—H10A119.3H19A—C19—H19C109.5
C9—C10—H10A119.3H19B—C19—H19C109.5
C10—C11—C12119.4 (4)C17—N1—C14108.7 (3)
C10—C11—H11A120.3C17—N1—C7112.2 (3)
C12—C11—H11A120.3C14—N1—C7109.4 (2)
C11—C12—C13120.9 (4)C17—N1—H1B106 (2)
C11—C12—H12A119.5C14—N1—H1B110 (2)
C13—C12—H12A119.5C7—N1—H1B110 (2)
C12—C13—C8119.6 (4)C16—N2—C15109.0 (3)
C12—C13—H13A120.2C16—N2—C18113.4 (3)
C8—C13—H13A120.2C15—N2—C18111.7 (3)
N1—C14—C15112.0 (3)C16—N2—H2B111 (2)
N1—C14—H14A109.2C15—N2—H2B107 (2)
C15—C14—H14A109.2C18—N2—H2B104 (2)
C6—C1—C2—C30.9 (8)C10—C11—C12—C13−0.1 (7)
C1—C2—C3—C4−1.0 (8)C11—C12—C13—C8−0.8 (6)
C2—C3—C4—C50.2 (6)C9—C8—C13—C121.5 (6)
C2—C3—C4—C7177.2 (4)C7—C8—C13—C12−174.2 (3)
C3—C4—C5—C60.8 (6)N1—C14—C15—N2−57.9 (4)
C7—C4—C5—C6−176.4 (4)N2—C16—C17—N157.7 (4)
C2—C1—C6—C50.1 (8)C16—C17—N1—C14−55.1 (4)
C4—C5—C6—C1−0.9 (7)C16—C17—N1—C7−176.3 (3)
C5—C4—C7—C890.9 (4)C15—C14—N1—C1755.1 (3)
C3—C4—C7—C8−86.2 (4)C15—C14—N1—C7177.9 (2)
C5—C4—C7—N1−140.7 (3)C8—C7—N1—C17−51.4 (3)
C3—C4—C7—N142.2 (5)C4—C7—N1—C17−179.6 (3)
N1—C7—C8—C9117.2 (4)C8—C7—N1—C14−172.2 (3)
C4—C7—C8—C9−114.5 (4)C4—C7—N1—C1459.7 (3)
N1—C7—C8—C13−67.0 (4)C17—C16—N2—C15−57.0 (4)
C4—C7—C8—C1361.3 (4)C17—C16—N2—C18177.9 (3)
C13—C8—C9—C10−1.4 (6)C14—C15—N2—C1657.4 (3)
C7—C8—C9—C10174.5 (3)C14—C15—N2—C18−176.6 (3)
C8—C9—C10—C110.5 (7)C19—C18—N2—C16−66.6 (4)
C9—C10—C11—C120.3 (7)C19—C18—N2—C15169.8 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1B···Cl20.96 (4)2.09 (4)3.028 (3)165 (3)
N2—H2B···Cl10.85 (4)2.16 (4)3.006 (3)174 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯Cl20.96 (4)2.09 (4)3.028 (3)165 (3)
N2—H2B⋯Cl10.85 (4)2.16 (4)3.006 (3)174 (3)
  4 in total

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Authors:  A P Moran; M E Upton
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