Literature DB >> 21588051

6,7-Dihydro-3H-1,4-diazepino[1,2,3,4-lmn][1,10]phenanthroline-3,9(5H)-dione.

Said Nadeem, Itrat Anis, Donald Vanderveer, Muhammad Raza Shah.   

Abstract

In the title compound, C(15)H(12)N(2)O(2), the seven-membered ring bearing the three methyl-ene C atoms displays a puckered conformation, with the methyl-ene C atoms deviating from the plane of the benzene ring by 0.05 (1), 0.98 (1) and 1.04 (1) Å. The phenanthroline unit is not planar; the dihedral angles between this benzene ring and the other pyridyl rings are 9.62 (4) and 9.31 (4)°. The crystal packing is stabilized by π-π inter-actions between two phenanthroline ring systems, forming a centrosymmetric dimer with a centroid-centroid distance of 3.656 (1) Å.

Entities:  

Year:  2010        PMID: 21588051      PMCID: PMC3006698          DOI: 10.1107/S1600536810024761

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to π–π inter­actions in supra­molecular chemistry, see: Sisson et al. (2006 ▶). For a related structure, see: Nadeem et al. (2009 ▶).

Experimental

Crystal data

C15H12N2O2 M = 252.27 Monoclinic, a = 9.1853 (18) Å b = 13.931 (3) Å c = 9.4956 (19) Å β = 111.14 (3)° V = 1133.3 (4) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 158 K 0.50 × 0.46 × 0.38 mm

Data collection

Rigaku Mercury CCD diffractometer Absorption correction: multi-scan (REQAB; Jacobson, 1998 ▶) T min = 0.952, T max = 0.963 8367 measured reflections 2309 independent reflections 2115 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.111 S = 1.06 2309 reflections 172 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2006 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810024761/ng2793sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024761/ng2793Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12N2O2F(000) = 528
Mr = 252.27Dx = 1.478 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 9.1853 (18) ÅCell parameters from 3526 reflections
b = 13.931 (3) Åθ = 2.7–26.4°
c = 9.4956 (19) ŵ = 0.10 mm1
β = 111.14 (3)°T = 158 K
V = 1133.3 (4) Å3Chip, yellow
Z = 40.50 × 0.46 × 0.38 mm
Rigaku Mercury CCD diffractometer2309 independent reflections
Radiation source: Sealed Tube2115 reflections with I > 2σ(I)
Graphite MonochromatorRint = 0.016
Detector resolution: 14.6306 pixels mm-1θmax = 26.4°, θmin = 2.7°
ω scansh = −11→9
Absorption correction: multi-scan (REQAB; Jacobson, 1998)k = −17→17
Tmin = 0.952, Tmax = 0.963l = −10→11
8367 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0632P)2 + 0.3698P] where P = (Fo2 + 2Fc2)/3
2309 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N11.02892 (11)0.14451 (7)0.36246 (11)0.0183 (2)
N20.79115 (11)0.11065 (7)0.06165 (11)0.0186 (2)
O11.09796 (11)0.14573 (7)0.61843 (10)0.0313 (2)
O20.53670 (10)0.10333 (7)−0.09893 (10)0.0285 (2)
C11.13585 (14)0.13175 (9)0.50775 (13)0.0219 (3)
C21.29358 (14)0.10579 (9)0.52135 (13)0.0239 (3)
H21.36940.09110.61900.029*
C31.33514 (14)0.10204 (9)0.39944 (14)0.0234 (3)
H31.44230.09050.41280.028*
C3A1.22264 (13)0.11496 (8)0.24970 (13)0.0193 (3)
C41.26651 (14)0.11749 (8)0.12166 (14)0.0228 (3)
H41.37350.10750.13280.027*
C51.15645 (14)0.13419 (9)−0.01825 (13)0.0223 (3)
H51.18790.1443−0.10320.027*
C5A0.99677 (14)0.13661 (8)−0.03786 (13)0.0197 (3)
C60.87822 (15)0.14730 (9)−0.18533 (13)0.0238 (3)
H60.90790.1576−0.27130.029*
C70.72644 (15)0.14297 (9)−0.20391 (13)0.0250 (3)
H70.64970.1561−0.30180.030*
C80.67481 (14)0.11909 (8)−0.08064 (14)0.0216 (3)
C8A0.94915 (13)0.12578 (8)0.08617 (13)0.0171 (3)
C8B1.06584 (13)0.12776 (8)0.23397 (13)0.0170 (2)
C90.74874 (13)0.06207 (8)0.17982 (13)0.0216 (3)
H9A0.82410.01290.22590.026*
H9B0.64880.03180.13410.026*
C100.74195 (14)0.13128 (9)0.30056 (14)0.0239 (3)
H10A0.74050.09610.38690.029*
H10B0.64830.16890.26250.029*
C110.88345 (13)0.19676 (8)0.34603 (13)0.0209 (3)
H11A0.86670.24600.27120.025*
H11B0.89500.22730.44010.025*
U11U22U33U12U13U23
N10.0176 (5)0.0208 (5)0.0166 (5)0.0005 (4)0.0063 (4)0.0000 (4)
N20.0164 (5)0.0197 (5)0.0181 (5)−0.0012 (4)0.0044 (4)0.0005 (4)
O10.0303 (5)0.0472 (6)0.0171 (4)0.0023 (4)0.0094 (4)0.0011 (4)
O20.0179 (4)0.0298 (5)0.0316 (5)−0.0017 (3)0.0015 (4)0.0023 (4)
C10.0220 (6)0.0245 (6)0.0178 (5)−0.0021 (4)0.0055 (4)0.0008 (4)
C20.0206 (6)0.0270 (6)0.0194 (5)−0.0007 (5)0.0016 (4)0.0024 (4)
C30.0165 (5)0.0260 (6)0.0250 (6)0.0013 (4)0.0040 (5)0.0009 (5)
C3A0.0183 (6)0.0187 (5)0.0204 (6)−0.0006 (4)0.0065 (4)−0.0011 (4)
C40.0201 (6)0.0238 (6)0.0267 (6)−0.0010 (4)0.0112 (5)−0.0032 (5)
C50.0255 (6)0.0229 (6)0.0220 (6)−0.0029 (5)0.0130 (5)−0.0027 (4)
C5A0.0228 (6)0.0174 (5)0.0189 (5)−0.0016 (4)0.0077 (5)−0.0009 (4)
C60.0296 (6)0.0231 (6)0.0177 (6)−0.0016 (5)0.0073 (5)−0.0001 (4)
C70.0264 (6)0.0248 (6)0.0180 (5)0.0000 (5)0.0011 (5)0.0005 (4)
C80.0202 (6)0.0172 (5)0.0231 (6)−0.0003 (4)0.0026 (5)−0.0009 (4)
C8A0.0174 (5)0.0151 (5)0.0189 (6)−0.0007 (4)0.0065 (4)−0.0005 (4)
C8B0.0177 (6)0.0157 (5)0.0176 (5)−0.0007 (4)0.0063 (4)0.0001 (4)
C90.0188 (5)0.0225 (6)0.0236 (6)−0.0034 (4)0.0077 (4)0.0019 (4)
C100.0195 (6)0.0290 (6)0.0254 (6)−0.0010 (5)0.0107 (5)0.0003 (5)
C110.0190 (5)0.0226 (6)0.0216 (5)0.0019 (4)0.0081 (4)−0.0011 (4)
N1—C11.3866 (16)C5—C5A1.4107 (17)
N1—C8B1.3987 (15)C5—H50.9600
N1—C111.4795 (14)C5A—C8A1.4044 (16)
N2—C81.3929 (16)C5A—C61.4385 (17)
N2—C8A1.4005 (15)C6—C71.3420 (18)
N2—C91.4779 (14)C6—H60.9600
O1—C11.2358 (15)C7—C81.4512 (18)
O2—C81.2364 (15)C7—H70.9600
C1—C21.4531 (17)C8A—C8B1.4264 (17)
C2—C31.3443 (17)C9—C101.5165 (17)
C2—H20.9600C9—H9A0.9600
C3—C3A1.4361 (17)C9—H9B0.9600
C3—H30.9600C10—C111.5176 (16)
C3A—C8B1.4048 (16)C10—H10A0.9600
C3A—C41.4124 (17)C10—H10B0.9600
C4—C51.3684 (18)C11—H11A0.9600
C4—H40.9600C11—H11B0.9600
C1—N1—C8B122.61 (10)C6—C7—C8122.03 (11)
C1—N1—C11117.18 (10)C6—C7—H7119.0
C8B—N1—C11118.94 (9)C8—C7—H7119.0
C8—N2—C8A122.35 (10)O2—C8—N2120.71 (11)
C8—N2—C9117.07 (9)O2—C8—C7123.00 (11)
C8A—N2—C9118.93 (9)N2—C8—C7116.25 (11)
O1—C1—N1120.68 (11)N2—C8A—C5A119.61 (10)
O1—C1—C2122.76 (11)N2—C8A—C8B122.17 (10)
N1—C1—C2116.50 (10)C5A—C8A—C8B118.19 (11)
C3—C2—C1121.12 (11)N1—C8B—C3A119.36 (10)
C3—C2—H2119.4N1—C8B—C8A121.94 (10)
C1—C2—H2119.4C3A—C8B—C8A118.68 (11)
C2—C3—C3A121.42 (11)N2—C9—C10112.13 (10)
C2—C3—H3119.3N2—C9—H9A109.2
C3A—C3—H3119.3C10—C9—H9A109.2
C8B—C3A—C4120.34 (11)N2—C9—H9B109.2
C8B—C3A—C3117.73 (11)C10—C9—H9B109.2
C4—C3A—C3121.91 (11)H9A—C9—H9B107.9
C5—C4—C3A119.98 (11)C9—C10—C11109.44 (9)
C5—C4—H4120.0C9—C10—H10A109.8
C3A—C4—H4120.0C11—C10—H10A109.8
C4—C5—C5A120.08 (11)C9—C10—H10B109.8
C4—C5—H5120.0C11—C10—H10B109.8
C5A—C5—H5120.0H10A—C10—H10B108.2
C8A—C5A—C5120.67 (11)N1—C11—C10112.49 (10)
C8A—C5A—C6118.17 (11)N1—C11—H11A109.1
C5—C5A—C6121.14 (11)C10—C11—H11A109.1
C7—C6—C5A120.61 (11)N1—C11—H11B109.1
C7—C6—H6119.7C10—C11—H11B109.1
C5A—C6—H6119.7H11A—C11—H11B107.8
C8B—N1—C1—O1−178.75 (11)C8—N2—C8A—C8B172.78 (10)
C11—N1—C1—O114.27 (16)C9—N2—C8A—C8B−22.26 (15)
C8B—N1—C1—C23.94 (16)C5—C5A—C8A—N2−168.25 (11)
C11—N1—C1—C2−163.05 (10)C6—C5A—C8A—N29.93 (15)
O1—C1—C2—C3−172.18 (12)C5—C5A—C8A—C8B9.86 (16)
N1—C1—C2—C35.07 (17)C6—C5A—C8A—C8B−171.97 (10)
C1—C2—C3—C3A−5.67 (19)C1—N1—C8B—C3A−12.22 (16)
C2—C3—C3A—C8B−2.60 (17)C11—N1—C8B—C3A154.55 (10)
C2—C3—C3A—C4175.74 (11)C1—N1—C8B—C8A169.50 (10)
C8B—C3A—C4—C51.19 (17)C11—N1—C8B—C8A−23.73 (15)
C3—C3A—C4—C5−177.11 (11)C4—C3A—C8B—N1−167.08 (10)
C3A—C4—C5—C5A−8.16 (17)C3—C3A—C8B—N111.29 (16)
C4—C5—C5A—C8A2.53 (17)C4—C3A—C8B—C8A11.25 (16)
C4—C5—C5A—C6−175.58 (11)C3—C3A—C8B—C8A−170.38 (10)
C8A—C5A—C6—C7−2.72 (17)N2—C8A—C8B—N1−20.18 (16)
C5—C5A—C6—C7175.44 (11)C5A—C8A—C8B—N1161.76 (10)
C5A—C6—C7—C8−5.58 (18)N2—C8A—C8B—C3A161.53 (11)
C8A—N2—C8—O2178.52 (10)C5A—C8A—C8B—C3A−16.53 (15)
C9—N2—C8—O213.30 (16)C8—N2—C9—C10−109.99 (11)
C8A—N2—C8—C71.04 (16)C8A—N2—C9—C1084.27 (12)
C9—N2—C8—C7−164.18 (10)N2—C9—C10—C11−44.99 (13)
C6—C7—C8—O2−170.97 (12)C1—N1—C11—C10−108.30 (11)
C6—C7—C8—N26.44 (17)C8B—N1—C11—C1084.22 (12)
C8—N2—C8A—C5A−9.19 (16)C9—C10—C11—N1−42.52 (13)
C9—N2—C8A—C5A155.77 (10)
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Authors:  Adam L Sisson; Muhammad Raza Shah; Sheshanath Bhosale; Stefan Matile
Journal:  Chem Soc Rev       Date:  2006-05-18       Impact factor: 54.564

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  N,N'-Bis(4-methoxy-benzyl-idene)-4,4'-(m-phenyl-enedi-oxy)dianiline.

Authors:  Said Nadeem; Muhammad Raza Shah; Donald Vanderveer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-28

4.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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