Literature DB >> 21588044

2,2,4-Trimethyl-7-nitro-2,3-dihydro-1H-1,5-benzodiazepin-5-ium perchlorate.

Sayed Hasan Mehdi, Othman Sulaiman, Raza Murad Ghalib, Chin Sing Yeap, Hoong-Kun Fun.   

Abstract

In the title mol-ecular salt, C(12)H(16)N(3)O(2) (+)·ClO(4) (-), the nitro group is close to being coplanar with the benzene ring [dihedral angle = 8.1 (3)°]. The seven-membered ring has a maximum deviation of 0.502 (3) Å at the C atom between the dimethyl- and methyl-substituted C atoms. In the crystal, the components are linked into infinite sheets lying parallel to the bc plane by N-H⋯O and C-H⋯O hydrogen bonds. A short O⋯N contact of 2.896 (4) Å occurs within the sheets and a short O⋯O contact of 2.608 (4) Å occurs between the sheets.

Entities:  

Year:  2010        PMID: 21588044      PMCID: PMC3006776          DOI: 10.1107/S1600536810024475

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and applications of benzimidazole derivatives, see: Landquist (1984 ▶); Insuasty et al. (2010 ▶); Balakrishna & Kaboudin (2001 ▶); Ballo et al. (2010 ▶). For the preparation of the title compound, see: Grech et al. (1994 ▶). For ring conformations, see Cremer & Pople (1975 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C12H16N3O2ClO4 M = 333.73 Monoclinic, a = 21.046 (7) Å b = 11.818 (3) Å c = 15.636 (6) Å β = 132.176 (9)° V = 2882.0 (16) Å3 Z = 8 Mo Kα radiation μ = 0.30 mm−1 T = 100 K 0.30 × 0.17 × 0.08 mm

Data collection

Bruker APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.915, T max = 0.976 24582 measured reflections 3323 independent reflections 2816 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.138 S = 1.05 3323 reflections 210 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.69 e Å−3 Δρmin = −0.69 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810024475/hb5507sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024475/hb5507Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H16N3O2+·ClO4F(000) = 1392
Mr = 333.73Dx = 1.538 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 7331 reflections
a = 21.046 (7) Åθ = 2.2–29.8°
b = 11.818 (3) ŵ = 0.30 mm1
c = 15.636 (6) ÅT = 100 K
β = 132.176 (9)°Plate, brown
V = 2882.0 (16) Å30.30 × 0.17 × 0.08 mm
Z = 8
Bruker APEXII DUO CCD diffractometer3323 independent reflections
Radiation source: fine-focus sealed tube2816 reflections with I > 2σ(I)
graphiteRint = 0.066
φ and ω scansθmax = 27.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −27→27
Tmin = 0.915, Tmax = 0.976k = −15→15
24582 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0714P)2 + 7.0069P] where P = (Fo2 + 2Fc2)/3
3323 reflections(Δ/σ)max < 0.001
210 parametersΔρmax = 0.69 e Å3
0 restraintsΔρmin = −0.68 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.15021 (3)0.71202 (4)0.49658 (4)0.01923 (16)
O10.13150 (11)0.68718 (14)0.56727 (14)0.0259 (4)
O20.19403 (11)0.82394 (13)0.52807 (14)0.0245 (4)
O30.21587 (10)0.62367 (14)0.52533 (14)0.0256 (4)
O40.07604 (10)0.70691 (14)0.37336 (13)0.0234 (4)
O50.08273 (11)1.21240 (13)0.25797 (14)0.0249 (4)
O60.09384 (11)1.07773 (14)0.36195 (13)0.0246 (4)
N10.11724 (12)0.79665 (15)0.04379 (16)0.0183 (4)
N20.10204 (12)0.72103 (15)0.21588 (15)0.0176 (4)
N30.08881 (11)1.11171 (16)0.28211 (15)0.0194 (4)
C10.10956 (12)0.86625 (17)0.10449 (16)0.0152 (4)
C20.10763 (13)0.98440 (18)0.08478 (17)0.0166 (4)
H2A0.11271.00790.03280.020*
C30.09866 (12)1.06450 (17)0.13882 (17)0.0166 (4)
H3A0.09671.14100.12320.020*
C40.09241 (12)1.02892 (18)0.21822 (17)0.0172 (4)
C50.09300 (13)0.91616 (18)0.24014 (17)0.0172 (4)
H5A0.08720.89450.29180.021*
C60.10220 (12)0.83451 (17)0.18541 (17)0.0155 (4)
C70.14051 (13)0.63366 (18)0.21973 (17)0.0180 (4)
C80.19130 (13)0.64237 (19)0.18564 (18)0.0191 (4)
H8A0.21840.57000.19910.023*
H8B0.23640.69780.23470.023*
C90.13798 (13)0.67632 (17)0.05830 (17)0.0165 (4)
C100.05645 (14)0.60604 (19)−0.02308 (18)0.0216 (4)
H10A0.02690.6260−0.10150.032*
H10B0.02000.6207−0.00770.032*
H10C0.07100.5271−0.01130.032*
C110.19389 (15)0.6604 (2)0.0295 (2)0.0234 (5)
H11A0.16270.6841−0.04850.035*
H11B0.20910.58210.03770.035*
H11C0.24500.70510.08130.035*
C120.13540 (15)0.52362 (18)0.26078 (19)0.0222 (4)
H12A0.09700.53050.27380.033*
H12B0.19140.50280.33150.033*
H12C0.11450.46650.20350.033*
H1N10.1130 (16)0.826 (2)−0.006 (2)0.016 (6)*
H1N20.0798 (19)0.715 (2)0.243 (3)0.030 (8)*
U11U22U33U12U13U23
Cl10.0193 (3)0.0214 (3)0.0170 (3)−0.00116 (18)0.0122 (2)−0.00003 (18)
O10.0328 (9)0.0283 (9)0.0249 (8)−0.0029 (7)0.0228 (8)0.0002 (7)
O20.0298 (8)0.0167 (8)0.0277 (8)−0.0057 (6)0.0195 (7)−0.0039 (6)
O30.0230 (8)0.0219 (8)0.0289 (9)0.0046 (6)0.0162 (7)0.0013 (7)
O40.0169 (7)0.0350 (9)0.0147 (8)−0.0018 (6)0.0091 (7)−0.0003 (6)
O50.0305 (9)0.0176 (8)0.0253 (8)0.0029 (6)0.0183 (7)0.0006 (6)
O60.0319 (9)0.0267 (8)0.0192 (8)0.0026 (7)0.0188 (7)0.0002 (6)
N10.0239 (9)0.0180 (9)0.0167 (9)0.0012 (7)0.0152 (8)0.0019 (7)
N20.0186 (8)0.0192 (9)0.0156 (8)−0.0018 (7)0.0118 (7)0.0008 (7)
N30.0185 (8)0.0213 (9)0.0169 (8)0.0015 (7)0.0113 (7)−0.0003 (7)
C10.0108 (8)0.0192 (10)0.0122 (9)−0.0005 (7)0.0064 (7)−0.0002 (7)
C20.0147 (9)0.0202 (10)0.0134 (9)−0.0019 (8)0.0088 (8)0.0006 (7)
C30.0132 (9)0.0174 (10)0.0136 (9)−0.0013 (7)0.0067 (8)0.0001 (7)
C40.0146 (9)0.0204 (10)0.0141 (9)0.0014 (8)0.0087 (8)−0.0008 (8)
C50.0144 (9)0.0234 (10)0.0127 (9)0.0004 (8)0.0086 (8)0.0012 (8)
C60.0128 (9)0.0179 (10)0.0138 (9)−0.0011 (7)0.0082 (8)0.0003 (7)
C70.0164 (9)0.0205 (10)0.0113 (9)−0.0025 (8)0.0069 (8)0.0003 (7)
C80.0159 (9)0.0220 (10)0.0172 (10)0.0016 (8)0.0102 (8)0.0027 (8)
C90.0162 (9)0.0164 (9)0.0174 (10)0.0013 (8)0.0115 (8)0.0018 (8)
C100.0209 (10)0.0231 (11)0.0182 (10)−0.0032 (8)0.0121 (9)−0.0019 (8)
C110.0254 (11)0.0241 (11)0.0289 (12)0.0026 (9)0.0215 (10)0.0029 (9)
C120.0278 (11)0.0181 (10)0.0207 (10)−0.0013 (9)0.0163 (9)0.0017 (8)
Cl1—O11.4310 (16)C4—C51.374 (3)
Cl1—O41.4538 (16)C5—C61.387 (3)
Cl1—O21.4941 (16)C5—H5A0.9300
Cl1—O31.5388 (17)C7—C81.484 (3)
O5—N31.229 (2)C7—C121.486 (3)
O6—N31.246 (2)C8—C91.544 (3)
N1—C11.345 (3)C8—H8A0.9700
N1—C91.460 (3)C8—H8B0.9700
N1—H1N10.79 (3)C9—C101.524 (3)
N2—C71.288 (3)C9—C111.528 (3)
N2—C61.424 (3)C10—H10A0.9600
N2—H1N20.81 (3)C10—H10B0.9600
N3—C41.436 (3)C10—H10C0.9600
C1—C61.425 (3)C11—H11A0.9600
C1—C21.425 (3)C11—H11B0.9600
C2—C31.364 (3)C11—H11C0.9600
C2—H2A0.9300C12—H12A0.9600
C3—C41.398 (3)C12—H12B0.9600
C3—H3A0.9300C12—H12C0.9600
O1—Cl1—O4114.06 (10)N2—C7—C8120.61 (19)
O1—Cl1—O2110.86 (10)N2—C7—C12119.75 (19)
O4—Cl1—O2110.46 (10)C8—C7—C12119.63 (19)
O1—Cl1—O3107.10 (10)C7—C8—C9113.96 (17)
O4—Cl1—O3108.27 (10)C7—C8—H8A108.8
O2—Cl1—O3105.65 (10)C9—C8—H8A108.8
C1—N1—C9130.62 (18)C7—C8—H8B108.8
C1—N1—H1N1115.8 (19)C9—C8—H8B108.8
C9—N1—H1N1113.4 (19)H8A—C8—H8B107.7
C7—N2—C6128.90 (19)N1—C9—C10110.47 (17)
C7—N2—H1N2118 (2)N1—C9—C11106.44 (17)
C6—N2—H1N2113 (2)C10—C9—C11110.21 (18)
O5—N3—O6122.75 (18)N1—C9—C8109.64 (17)
O5—N3—C4119.30 (18)C10—C9—C8111.79 (17)
O6—N3—C4117.94 (18)C11—C9—C8108.13 (17)
N1—C1—C6127.01 (19)C9—C10—H10A109.5
N1—C1—C2116.50 (18)C9—C10—H10B109.5
C6—C1—C2116.48 (18)H10A—C10—H10B109.5
C3—C2—C1122.82 (19)C9—C10—H10C109.5
C3—C2—H2A118.6H10A—C10—H10C109.5
C1—C2—H2A118.6H10B—C10—H10C109.5
C2—C3—C4118.43 (19)C9—C11—H11A109.5
C2—C3—H3A120.8C9—C11—H11B109.5
C4—C3—H3A120.8H11A—C11—H11B109.5
C5—C4—C3121.52 (19)C9—C11—H11C109.5
C5—C4—N3118.88 (18)H11A—C11—H11C109.5
C3—C4—N3119.55 (19)H11B—C11—H11C109.5
C4—C5—C6120.17 (19)C7—C12—H12A109.5
C4—C5—H5A119.9C7—C12—H12B109.5
C6—C5—H5A119.9H12A—C12—H12B109.5
C5—C6—N2114.60 (18)C7—C12—H12C109.5
C5—C6—C1120.55 (19)H12A—C12—H12C109.5
N2—C6—C1124.83 (18)H12B—C12—H12C109.5
C9—N1—C1—C6−14.5 (3)C7—N2—C6—C131.3 (3)
C9—N1—C1—C2166.30 (19)N1—C1—C6—C5−178.74 (19)
N1—C1—C2—C3178.87 (18)C2—C1—C6—C50.5 (3)
C6—C1—C2—C3−0.5 (3)N1—C1—C6—N20.2 (3)
C1—C2—C3—C41.0 (3)C2—C1—C6—N2179.44 (18)
C2—C3—C4—C5−1.6 (3)C6—N2—C7—C8−2.4 (3)
C2—C3—C4—N3175.77 (18)C6—N2—C7—C12176.47 (19)
O5—N3—C4—C5−175.37 (19)N2—C7—C8—C9−62.3 (3)
O6—N3—C4—C56.1 (3)C12—C7—C8—C9118.8 (2)
O5—N3—C4—C37.1 (3)C1—N1—C9—C1097.6 (2)
O6—N3—C4—C3−171.40 (18)C1—N1—C9—C11−142.8 (2)
C3—C4—C5—C61.7 (3)C1—N1—C9—C8−26.1 (3)
N3—C4—C5—C6−175.70 (18)C7—C8—C9—N174.8 (2)
C4—C5—C6—N2179.81 (18)C7—C8—C9—C10−48.0 (2)
C4—C5—C6—C1−1.2 (3)C7—C8—C9—C11−169.51 (18)
C7—N2—C6—C5−149.7 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O6i0.80 (3)2.15 (3)2.941 (3)173 (3)
N2—H1N2···O40.82 (5)2.09 (4)2.864 (4)156 (4)
N2—H1N2···O4ii0.82 (5)2.46 (5)3.000 (4)124 (3)
C3—H3A···O1i0.932.513.373 (3)155
C11—H11A···O5i0.962.583.524 (3)169
C11—H11B···O3iii0.962.453.396 (3)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O6i0.80 (3)2.15 (3)2.941 (3)173 (3)
N2—H1N2⋯O40.82 (5)2.09 (4)2.864 (4)156 (4)
N2—H1N2⋯O4ii0.82 (5)2.46 (5)3.000 (4)124 (3)
C3—H3A⋯O1i0.932.513.373 (3)155
C11—H11A⋯O5i0.962.583.524 (3)169
C11—H11B⋯O3iii0.962.453.396 (3)168

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-Allyl-4-phenyl-2,3-dihydro-1H-1,5-benzodiazepin-2-one.

Authors:  Daouda Ballo; Noureddine Hamou Ahabchane; Hafid Zouihri; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-08

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  2-(4-Nitro-benzyl-idene)malononitrile.

Authors:  Ming-Jen Chang; Tzu-Chien Fang; Hsing-Yang Tsai; Ming-Hui Luo; Kew-Yu Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-03
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.