Literature DB >> 21588035

2,3-Dimethyl-6-nitro-quinoxaline.

Raza Murad Ghalib, Rokiah Hashim, Sayed Hasan Mehdi, Jia Hao Goh, Hoong-Kun Fun.   

Abstract

The asymmetric unit of the title quinoxaline compound, C(10)H(9)N(3)O(2), contains two crystallographically independent mol-ecules (A and B). The quinoxaline ring systems are essentially planar, with maximum deviations of 0.006 (1) and 0.017 (1) Å, respectively, for mol-ecules A and B. In mol-ecule A, the dihedral angle formed between the quinoxaline ring system and nitro group is 10.94 (3)° [6.31 (13)° for mol-ecule B]. In the crystal, mol-ecules are linked into chains propagating along [001]: one forms zigzag chains linked by C-H⋯O hydrogen bonds, whilst the other forms ladder-like chains by way of C-H⋯N and C-H⋯O hydrogen bonds. The packing is further consolidated by weak π-π inter-actions [range of centroid-centroid distances = 3.5895 (7)-3.6324 (7) Å].

Entities:  

Year:  2010        PMID: 21588035      PMCID: PMC3006956          DOI: 10.1107/S1600536810024463

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of the title quinoxaline compound, see: Darabi et al. (2008 ▶). For the synthesis, see: Ajaikumar & Pandurangan (2009 ▶); Darabi et al. (2009 ▶). For related quinoxaline structures, see: Ghalib et al. (2010 ▶); Wozniak et al. (1993 ▶). For graph-set descriptions of hydrogen-bond ring motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C10H9N3O2 M = 203.20 Monoclinic, a = 7.1125 (7) Å b = 22.490 (2) Å c = 12.9596 (10) Å β = 115.026 (4)° V = 1878.4 (3) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.26 × 0.21 × 0.10 mm

Data collection

Bruker APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.973, T max = 0.990 52279 measured reflections 7510 independent reflections 5559 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.136 S = 1.03 7510 reflections 275 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810024463/hb5504sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024463/hb5504Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9N3O2F(000) = 848
Mr = 203.20Dx = 1.437 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9916 reflections
a = 7.1125 (7) Åθ = 3.4–33.5°
b = 22.490 (2) ŵ = 0.10 mm1
c = 12.9596 (10) ÅT = 100 K
β = 115.026 (4)°Block, brown
V = 1878.4 (3) Å30.26 × 0.21 × 0.10 mm
Z = 8
Bruker APEXII DUO CCD diffractometer7510 independent reflections
Radiation source: fine-focus sealed tube5559 reflections with I > 2σ(I)
graphiteRint = 0.043
φ and ω scansθmax = 33.8°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→11
Tmin = 0.973, Tmax = 0.990k = −35→35
52279 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.077P)2 + 0.2747P] where P = (Fo2 + 2Fc2)/3
7510 reflections(Δ/σ)max = 0.001
275 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.20 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1A0.42483 (15)0.54231 (3)0.13432 (7)0.03320 (19)
O2A0.40149 (14)0.57864 (4)0.28272 (7)0.03070 (18)
N1A0.46872 (13)0.81176 (4)0.03295 (7)0.02043 (16)
N2A0.50093 (12)0.79631 (4)0.25642 (7)0.01853 (15)
N3A0.41730 (13)0.58434 (4)0.19278 (7)0.02205 (16)
C1A0.49512 (15)0.85691 (4)0.10172 (8)0.02068 (17)
C2A0.45607 (13)0.75638 (4)0.07370 (8)0.01702 (16)
C3A0.42621 (14)0.70659 (4)0.00252 (8)0.01940 (17)
H3A0.41600.7116−0.07090.023*
C4A0.41210 (14)0.65075 (4)0.04132 (8)0.01985 (17)
H4A0.39150.6177−0.00530.024*
C5A0.42934 (14)0.64452 (4)0.15257 (8)0.01822 (16)
C6A0.45822 (14)0.69133 (4)0.22529 (8)0.01792 (16)
H6A0.46860.68550.29850.022*
C7A0.47173 (13)0.74866 (4)0.18519 (7)0.01652 (15)
C8A0.51266 (14)0.84900 (4)0.21625 (8)0.01909 (16)
C9A0.54442 (18)0.90164 (5)0.29221 (9)0.0257 (2)
H9A0.56500.88840.36670.039*
H9B0.42440.92690.26130.039*
H9C0.66420.92340.29750.039*
C10A0.5085 (2)0.91790 (5)0.05931 (10)0.0309 (2)
H10A0.48900.9156−0.01860.046*
H10B0.64250.93460.10490.046*
H10C0.40270.94260.06430.046*
O1B1.02498 (14)0.88142 (4)0.11899 (7)0.03279 (18)
O2B1.01367 (14)0.86371 (3)0.28010 (7)0.03235 (18)
N1B0.91353 (13)0.60539 (4)0.08423 (7)0.02072 (15)
N2B0.96057 (12)0.64557 (4)0.30076 (7)0.01937 (15)
N3B1.00834 (13)0.84739 (4)0.18868 (8)0.02304 (17)
C1B0.91658 (15)0.56851 (4)0.16330 (8)0.02119 (17)
C2B0.93380 (13)0.66464 (4)0.11081 (8)0.01795 (16)
C3B0.92863 (15)0.70603 (4)0.02753 (8)0.02017 (17)
H3B0.90910.6928−0.04430.024*
C4B0.95218 (14)0.76554 (4)0.05198 (8)0.02043 (17)
H4B0.94960.7930−0.00220.025*
C5B0.98036 (14)0.78392 (4)0.16108 (8)0.01887 (16)
C6B0.98399 (14)0.74548 (4)0.24403 (8)0.01843 (16)
H6B1.00230.75950.31520.022*
C7B0.95944 (13)0.68435 (4)0.21894 (8)0.01721 (16)
C8B0.93904 (15)0.58899 (4)0.27364 (8)0.02046 (17)
C9B0.93881 (19)0.54547 (5)0.36108 (9)0.0285 (2)
H9D0.95540.56640.42890.043*
H9E1.05120.51790.37860.043*
H9F0.80970.52420.33180.043*
C10B0.8977 (2)0.50367 (5)0.13618 (11)0.0306 (2)
H10D0.88900.49780.06090.046*
H10E0.77470.48830.13990.046*
H10F1.01710.48320.19030.046*
U11U22U33U12U13U23
O1A0.0509 (5)0.0197 (3)0.0321 (4)−0.0016 (3)0.0206 (4)−0.0041 (3)
O2A0.0432 (5)0.0283 (4)0.0244 (4)−0.0055 (3)0.0179 (3)0.0018 (3)
N1A0.0232 (4)0.0210 (4)0.0172 (4)0.0026 (3)0.0086 (3)0.0016 (3)
N2A0.0196 (3)0.0201 (3)0.0165 (3)0.0004 (3)0.0082 (3)−0.0012 (3)
N3A0.0244 (4)0.0203 (4)0.0210 (4)−0.0024 (3)0.0092 (3)−0.0006 (3)
C1A0.0230 (4)0.0203 (4)0.0185 (4)0.0031 (3)0.0085 (3)0.0016 (3)
C2A0.0161 (4)0.0199 (4)0.0152 (4)0.0017 (3)0.0067 (3)0.0005 (3)
C3A0.0208 (4)0.0232 (4)0.0153 (4)0.0006 (3)0.0086 (3)−0.0019 (3)
C4A0.0204 (4)0.0216 (4)0.0182 (4)−0.0013 (3)0.0088 (3)−0.0033 (3)
C5A0.0174 (4)0.0188 (4)0.0187 (4)−0.0010 (3)0.0079 (3)−0.0003 (3)
C6A0.0175 (4)0.0208 (4)0.0157 (4)−0.0001 (3)0.0073 (3)−0.0004 (3)
C7A0.0149 (3)0.0201 (4)0.0145 (4)0.0004 (3)0.0061 (3)−0.0010 (3)
C8A0.0195 (4)0.0202 (4)0.0178 (4)0.0013 (3)0.0081 (3)−0.0011 (3)
C9A0.0338 (5)0.0209 (4)0.0239 (5)−0.0006 (4)0.0137 (4)−0.0044 (4)
C10A0.0488 (7)0.0204 (4)0.0243 (5)0.0037 (4)0.0162 (5)0.0043 (4)
O1B0.0440 (5)0.0202 (3)0.0365 (5)−0.0034 (3)0.0192 (4)0.0045 (3)
O2B0.0469 (5)0.0206 (3)0.0330 (4)−0.0026 (3)0.0203 (4)−0.0061 (3)
N1B0.0221 (4)0.0186 (3)0.0209 (4)−0.0005 (3)0.0085 (3)−0.0020 (3)
N2B0.0200 (3)0.0183 (3)0.0195 (4)0.0003 (3)0.0081 (3)0.0010 (3)
N3B0.0229 (4)0.0176 (3)0.0284 (4)−0.0011 (3)0.0106 (3)−0.0001 (3)
C1B0.0223 (4)0.0171 (4)0.0234 (4)0.0008 (3)0.0089 (3)−0.0009 (3)
C2B0.0159 (4)0.0186 (4)0.0187 (4)−0.0005 (3)0.0066 (3)−0.0011 (3)
C3B0.0208 (4)0.0212 (4)0.0188 (4)−0.0017 (3)0.0086 (3)−0.0003 (3)
C4B0.0194 (4)0.0207 (4)0.0213 (4)−0.0007 (3)0.0087 (3)0.0018 (3)
C5B0.0174 (4)0.0160 (4)0.0233 (4)−0.0009 (3)0.0087 (3)−0.0006 (3)
C6B0.0180 (4)0.0181 (4)0.0198 (4)−0.0009 (3)0.0085 (3)−0.0017 (3)
C7B0.0157 (3)0.0173 (4)0.0186 (4)−0.0006 (3)0.0072 (3)−0.0010 (3)
C8B0.0206 (4)0.0190 (4)0.0209 (4)0.0009 (3)0.0079 (3)0.0014 (3)
C9B0.0386 (6)0.0209 (4)0.0255 (5)−0.0002 (4)0.0131 (4)0.0042 (4)
C10B0.0433 (6)0.0176 (4)0.0334 (6)−0.0009 (4)0.0188 (5)−0.0027 (4)
O1A—N3A1.2267 (11)O1B—N3B1.2272 (11)
O2A—N3A1.2242 (11)O2B—N3B1.2255 (12)
N1A—C1A1.3111 (12)N1B—C1B1.3114 (12)
N1A—C2A1.3705 (12)N1B—C2B1.3686 (12)
N2A—C8A1.3111 (12)N2B—C8B1.3117 (12)
N2A—C7A1.3717 (11)N2B—C7B1.3703 (12)
N3A—C5A1.4658 (12)N3B—C5B1.4646 (12)
C1A—C8A1.4469 (13)C1B—C8B1.4454 (14)
C1A—C10A1.4956 (14)C1B—C10B1.4927 (14)
C2A—C3A1.4087 (13)C2B—C7B1.4062 (13)
C2A—C7A1.4121 (12)C2B—C3B1.4138 (13)
C3A—C4A1.3722 (13)C3B—C4B1.3693 (13)
C3A—H3A0.9300C3B—H3B0.9300
C4A—C5A1.4014 (13)C4B—C5B1.4036 (13)
C4A—H4A0.9300C4B—H4B0.9300
C5A—C6A1.3691 (13)C5B—C6B1.3711 (13)
C6A—C7A1.4086 (13)C6B—C7B1.4066 (12)
C6A—H6A0.9300C6B—H6B0.9300
C8A—C9A1.4944 (13)C8B—C9B1.4978 (14)
C9A—H9A0.9600C9B—H9D0.9600
C9A—H9B0.9600C9B—H9E0.9600
C9A—H9C0.9600C9B—H9F0.9600
C10A—H10A0.9600C10B—H10D0.9600
C10A—H10B0.9600C10B—H10E0.9600
C10A—H10C0.9600C10B—H10F0.9600
C1A—N1A—C2A117.11 (8)C1B—N1B—C2B117.01 (8)
C8A—N2A—C7A117.13 (8)C8B—N2B—C7B116.63 (8)
O2A—N3A—O1A123.57 (9)O2B—N3B—O1B123.47 (9)
O2A—N3A—C5A118.55 (8)O2B—N3B—C5B118.27 (8)
O1A—N3A—C5A117.88 (8)O1B—N3B—C5B118.27 (9)
N1A—C1A—C8A121.84 (9)N1B—C1B—C8B121.99 (9)
N1A—C1A—C10A118.27 (8)N1B—C1B—C10B117.64 (9)
C8A—C1A—C10A119.90 (9)C8B—C1B—C10B120.37 (9)
N1A—C2A—C3A119.10 (8)N1B—C2B—C7B120.87 (8)
N1A—C2A—C7A121.09 (8)N1B—C2B—C3B118.88 (8)
C3A—C2A—C7A119.80 (8)C7B—C2B—C3B120.25 (8)
C4A—C3A—C2A120.12 (8)C4B—C3B—C2B120.38 (9)
C4A—C3A—H3A119.9C4B—C3B—H3B119.8
C2A—C3A—H3A119.9C2B—C3B—H3B119.8
C3A—C4A—C5A118.70 (8)C3B—C4B—C5B118.18 (9)
C3A—C4A—H4A120.6C3B—C4B—H4B120.9
C5A—C4A—H4A120.6C5B—C4B—H4B120.9
C6A—C5A—C4A123.62 (8)C6B—C5B—C4B123.47 (9)
C6A—C5A—N3A118.66 (8)C6B—C5B—N3B117.86 (8)
C4A—C5A—N3A117.72 (8)C4B—C5B—N3B118.67 (8)
C5A—C6A—C7A117.63 (8)C5B—C6B—C7B118.40 (9)
C5A—C6A—H6A121.2C5B—C6B—H6B120.8
C7A—C6A—H6A121.2C7B—C6B—H6B120.8
N2A—C7A—C6A118.79 (8)N2B—C7B—C2B121.76 (8)
N2A—C7A—C2A121.09 (8)N2B—C7B—C6B118.93 (8)
C6A—C7A—C2A120.12 (8)C2B—C7B—C6B119.31 (8)
N2A—C8A—C1A121.74 (8)N2B—C8B—C1B121.72 (9)
N2A—C8A—C9A118.14 (8)N2B—C8B—C9B117.94 (9)
C1A—C8A—C9A120.12 (8)C1B—C8B—C9B120.34 (9)
C8A—C9A—H9A109.5C8B—C9B—H9D109.5
C8A—C9A—H9B109.5C8B—C9B—H9E109.5
H9A—C9A—H9B109.5H9D—C9B—H9E109.5
C8A—C9A—H9C109.5C8B—C9B—H9F109.5
H9A—C9A—H9C109.5H9D—C9B—H9F109.5
H9B—C9A—H9C109.5H9E—C9B—H9F109.5
C1A—C10A—H10A109.5C1B—C10B—H10D109.5
C1A—C10A—H10B109.5C1B—C10B—H10E109.5
H10A—C10A—H10B109.5H10D—C10B—H10E109.5
C1A—C10A—H10C109.5C1B—C10B—H10F109.5
H10A—C10A—H10C109.5H10D—C10B—H10F109.5
H10B—C10A—H10C109.5H10E—C10B—H10F109.5
C2A—N1A—C1A—C8A0.68 (14)C2B—N1B—C1B—C8B0.35 (14)
C2A—N1A—C1A—C10A−179.74 (9)C2B—N1B—C1B—C10B−179.15 (9)
C1A—N1A—C2A—C3A179.54 (9)C1B—N1B—C2B—C7B0.83 (13)
C1A—N1A—C2A—C7A−0.23 (13)C1B—N1B—C2B—C3B−179.19 (9)
N1A—C2A—C3A—C4A−179.69 (8)N1B—C2B—C3B—C4B−178.82 (9)
C7A—C2A—C3A—C4A0.09 (13)C7B—C2B—C3B—C4B1.16 (14)
C2A—C3A—C4A—C5A−0.42 (14)C2B—C3B—C4B—C5B−0.29 (14)
C3A—C4A—C5A—C6A0.49 (14)C3B—C4B—C5B—C6B−0.49 (14)
C3A—C4A—C5A—N3A−178.99 (8)C3B—C4B—C5B—N3B179.24 (8)
O2A—N3A—C5A—C6A11.04 (13)O2B—N3B—C5B—C6B−6.86 (13)
O1A—N3A—C5A—C6A−168.57 (9)O1B—N3B—C5B—C6B173.21 (9)
O2A—N3A—C5A—C4A−169.46 (9)O2B—N3B—C5B—C4B173.39 (9)
O1A—N3A—C5A—C4A10.93 (13)O1B—N3B—C5B—C4B−6.54 (13)
C4A—C5A—C6A—C7A−0.20 (14)C4B—C5B—C6B—C7B0.38 (14)
N3A—C5A—C6A—C7A179.27 (8)N3B—C5B—C6B—C7B−179.35 (8)
C8A—N2A—C7A—C6A−179.96 (8)C8B—N2B—C7B—C2B0.80 (13)
C8A—N2A—C7A—C2A0.28 (13)C8B—N2B—C7B—C6B−179.40 (8)
C5A—C6A—C7A—N2A−179.91 (8)N1B—C2B—C7B—N2B−1.47 (13)
C5A—C6A—C7A—C2A−0.15 (13)C3B—C2B—C7B—N2B178.54 (8)
N1A—C2A—C7A—N2A−0.27 (13)N1B—C2B—C7B—C6B178.72 (8)
C3A—C2A—C7A—N2A179.96 (8)C3B—C2B—C7B—C6B−1.26 (13)
N1A—C2A—C7A—C6A179.98 (8)C5B—C6B—C7B—N2B−179.31 (8)
C3A—C2A—C7A—C6A0.21 (13)C5B—C6B—C7B—C2B0.50 (13)
C7A—N2A—C8A—C1A0.16 (13)C7B—N2B—C8B—C1B0.39 (13)
C7A—N2A—C8A—C9A179.99 (8)C7B—N2B—C8B—C9B−179.77 (9)
N1A—C1A—C8A—N2A−0.68 (15)N1B—C1B—C8B—N2B−1.02 (15)
C10A—C1A—C8A—N2A179.74 (9)C10B—C1B—C8B—N2B178.47 (9)
N1A—C1A—C8A—C9A179.49 (9)N1B—C1B—C8B—C9B179.14 (9)
C10A—C1A—C8A—C9A−0.08 (14)C10B—C1B—C8B—C9B−1.37 (15)
D—H···AD—HH···AD···AD—H···A
C3A—H3A···N2Ai0.932.563.4486 (14)160
C9B—H9D···O1Bii0.962.583.5380 (14)176
C10A—H10A···O2Ai0.962.383.3355 (15)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3A—H3A⋯N2Ai0.932.563.4486 (14)160
C9B—H9D⋯O1Bii0.962.583.5380 (14)176
C10A—H10A⋯O2Ai0.962.383.3355 (15)171

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  11H-Indeno-[1,2-b]quinoxalin-11-one.

Authors:  Raza Murad Ghalib; Rokiah Hashim; Othman Sulaiman; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-29

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  Crystal structure of 1,3-bis-(2,3-di-methyl-quinoxalin-6-yl)benzene.

Authors:  Charles E Diesendruck; Gabrielle Rubin; Jeffery A Bertke; Danielle L Gray; Jeffrey S Moore
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-11-04
  1 in total

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