Literature DB >> 21588034

2-Chloro-4-nitro-1H-imidazole.

Hoong-Kun Fun, Jia Hao Goh, B Chandrakantha, Arun M Isloor, Prakash Shetty.   

Abstract

The mol-ecule of the title compound, C(3)H(2)ClN(3)O(2), is almost planar; the dihedral angle between the imidazole ring and the nitro group is 1.7 (2)°. In the crystal structure, pairs of inter-molecular C-H⋯O hydrogen bonds link inversion-related mol-ecules into dimers, generating R(2) (2)(10) ring motifs. The dimers are inter-connected into two-dimensional networks parallel to (102) via inter-molecular N-H⋯N hydrogen bonds. Further stabilization is provided by short inter-molecular Cl⋯O inter-actions [3.142 (2) and 3.1475 (19) Å].

Entities:  

Year:  2010        PMID: 21588034      PMCID: PMC3006860          DOI: 10.1107/S1600536810024542

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of imidazole derivatives, see: Anuradha et al. (2006 ▶); Clark & Macquarrie (1996 ▶); Jadhav et al. (2008 ▶); Kolavi et al. (2006 ▶); Susanta et al. (2000 ▶). For graph-set descriptions of hydrogen-bond ring motifs, see: Bernstein et al. (1995 ▶). For related 4-nitro­imidazole crystal structures, see: Ségalas et al. (1992 ▶); De Bondt et al. (1993 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C3H2ClN3O2 M = 147.53 Monoclinic, a = 5.905 (2) Å b = 10.033 (4) Å c = 9.150 (3) Å β = 105.180 (8)° V = 523.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.64 mm−1 T = 100 K 0.29 × 0.19 × 0.04 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.837, T max = 0.977 5484 measured reflections 1509 independent reflections 1195 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.097 S = 1.11 1509 reflections 90 parameters All H-atom parameters refined Δρmax = 0.42 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810024542/ci5106sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024542/ci5106Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C3H2ClN3O2F(000) = 296
Mr = 147.53Dx = 1.873 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2073 reflections
a = 5.905 (2) Åθ = 3.6–30.0°
b = 10.033 (4) ŵ = 0.64 mm1
c = 9.150 (3) ÅT = 100 K
β = 105.180 (8)°Plate, yellow
V = 523.2 (3) Å30.29 × 0.19 × 0.04 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer1509 independent reflections
Radiation source: fine-focus sealed tube1195 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 30.0°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −6→8
Tmin = 0.837, Tmax = 0.977k = −13→14
5484 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097All H-atom parameters refined
S = 1.11w = 1/[σ2(Fo2) + (0.0453P)2 + 0.1822P] where P = (Fo2 + 2Fc2)/3
1509 reflections(Δ/σ)max = 0.001
90 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.44 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.72178 (8)0.63986 (4)0.10842 (5)0.01869 (15)
O10.0169 (3)0.65199 (14)0.47907 (19)0.0268 (4)
O20.1231 (3)0.84048 (13)0.40048 (18)0.0250 (3)
N10.4713 (3)0.49414 (15)0.25596 (19)0.0157 (3)
N20.4212 (3)0.71387 (14)0.26450 (18)0.0151 (3)
N30.1318 (3)0.71851 (16)0.41138 (19)0.0190 (3)
C10.5304 (3)0.61677 (16)0.2149 (2)0.0149 (4)
C20.3104 (3)0.51281 (17)0.3371 (2)0.0164 (4)
C30.2845 (3)0.64762 (17)0.3405 (2)0.0150 (4)
H1N10.525 (4)0.417 (3)0.240 (3)0.025 (6)*
H20.246 (4)0.441 (3)0.375 (3)0.025 (6)*
U11U22U33U12U13U23
Cl10.0218 (2)0.0162 (2)0.0214 (3)−0.00093 (16)0.01140 (19)0.00052 (17)
O10.0311 (8)0.0228 (7)0.0340 (9)−0.0028 (6)0.0221 (7)−0.0015 (6)
O20.0308 (8)0.0120 (6)0.0351 (9)0.0043 (5)0.0140 (7)−0.0022 (6)
N10.0193 (8)0.0096 (7)0.0196 (8)0.0010 (6)0.0078 (7)−0.0003 (6)
N20.0179 (8)0.0107 (6)0.0184 (8)0.0001 (5)0.0075 (6)0.0000 (6)
N30.0206 (8)0.0151 (7)0.0231 (9)0.0008 (6)0.0090 (7)−0.0017 (6)
C10.0174 (9)0.0113 (8)0.0163 (9)−0.0013 (6)0.0053 (7)−0.0004 (6)
C20.0186 (9)0.0114 (8)0.0208 (10)−0.0010 (6)0.0082 (8)0.0001 (7)
C30.0167 (9)0.0122 (8)0.0170 (9)−0.0007 (6)0.0060 (7)−0.0019 (7)
Cl1—C11.690 (2)N2—C11.313 (2)
O1—N31.228 (2)N2—C31.368 (2)
O2—N31.228 (2)N3—C31.430 (2)
N1—C11.359 (2)C2—C31.362 (2)
N1—C21.363 (3)C2—H20.93 (3)
N1—H1N10.86 (3)
C1—N1—C2107.01 (15)N2—C1—Cl1124.11 (14)
C1—N1—H1N1129.2 (17)N1—C1—Cl1122.87 (14)
C2—N1—H1N1123.7 (17)C3—C2—N1104.32 (16)
C1—N2—C3102.95 (15)C3—C2—H2135.0 (16)
O2—N3—O1124.46 (17)N1—C2—H2120.7 (16)
O2—N3—C3118.46 (16)C2—C3—N2112.71 (17)
O1—N3—C3117.08 (16)C2—C3—N3126.29 (18)
N2—C1—N1113.01 (17)N2—C3—N3120.99 (16)
C3—N2—C1—N1−0.4 (2)C1—N2—C3—C20.0 (2)
C3—N2—C1—Cl1178.70 (15)C1—N2—C3—N3−179.05 (17)
C2—N1—C1—N20.6 (2)O2—N3—C3—C2−177.8 (2)
C2—N1—C1—Cl1−178.52 (14)O1—N3—C3—C21.9 (3)
C1—N1—C2—C3−0.5 (2)O2—N3—C3—N21.1 (3)
N1—C2—C3—N20.3 (2)O1—N3—C3—N2−179.10 (18)
N1—C2—C3—N3179.32 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···N2i0.86 (3)2.07 (3)2.900 (2)163 (2)
C2—H2···O1ii0.92 (3)2.48 (3)3.317 (3)151 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯N2i0.86 (3)2.07 (3)2.900 (2)163 (2)
C2—H2⋯O1ii0.92 (3)2.48 (3)3.317 (3)151 (2)

Symmetry codes: (i) ; (ii) .

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