Literature DB >> 21588020

6-(4-Amino-phen-yl)-2-eth-oxy-4-(2-thien-yl)nicotinonitrile.

Hoong-Kun Fun, Suchada Chantrapromma, Thawanrat Kobkeatthawin, Mahesh Padaki, Arun M Isloor.   

Abstract

In the title nicotinonitrile derivative, C(18)H(15)N(3)OS, the central pyridyl ring makes dihedral angles of 25.22 (10) and 24.80 (16)° with the 4-amino-phenyl and thio-phene rings, respectively. The thio-phene ring is disordered over two orientations by rotation around the C(thio-phene)-C(pyridine) bond; the occupancies are 0.858 (2) and 0.142 (2). The eth-oxy group is slightly twisted from the attached pyridyl ring [C-O-C-C torsion angle = 171.13 (16)°]. In the crystal structure, mol-ecules are linked by N-H⋯N hydrogen bonds into chains along [010]. These chains are stacked along the a axis. C-H⋯π weak inter-actions involving the thio-phene ring are observed.

Entities:  

Year:  2010        PMID: 21588020      PMCID: PMC3006713          DOI: 10.1107/S160053681002369X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For reference bond-length data, see: Allen et al. (1987 ▶). For the synthesis and applications of nicotinonitrile derivatives, see: Amr & Abdulla (2006 ▶); Borgna et al. (1993 ▶); Fun et al. (2009 ▶); Goda et al. (2004 ▶); Kamal et al. (2007 ▶); Malinka et al. (1998 ▶). For related structures, see: Chantrapromma et al. (2009 ▶, 2010 ▶); Fun et al. (2009 ▶). For the stability of the temperature controller used in the data collection, see Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C18H15N3OS M = 321.38 Orthorhombic, a = 7.0751 (12) Å b = 20.843 (4) Å c = 20.983 (4) Å V = 3094.3 (9) Å3 Z = 8 Mo Kα radiation μ = 0.22 mm−1 T = 100 K 0.35 × 0.11 × 0.04 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.928, T max = 0.992 34805 measured reflections 3045 independent reflections 2188 reflections with I > 2σ(I) R int = 0.092

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.085 S = 1.05 3045 reflections 233 parameters 88 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681002369X/wn2394sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681002369X/wn2394Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H15N3OSDx = 1.380 Mg m3
Mr = 321.38Melting point = 470–471 K
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3045 reflections
a = 7.0751 (12) Åθ = 1.9–26.0°
b = 20.843 (4) ŵ = 0.22 mm1
c = 20.983 (4) ÅT = 100 K
V = 3094.3 (9) Å3Plate, yellow
Z = 80.35 × 0.11 × 0.04 mm
F(000) = 1344
Bruker APEXII DUO CCD area-detector diffractometer3045 independent reflections
Radiation source: sealed tube2188 reflections with I > 2σ(I)
graphiteRint = 0.092
φ and ω scansθmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −8→8
Tmin = 0.928, Tmax = 0.992k = −25→24
34805 measured reflectionsl = −25→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.085H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0278P)2 + 1.8001P] where P = (Fo2 + 2Fc2)/3
3045 reflections(Δ/σ)max < 0.001
233 parametersΔρmax = 0.21 e Å3
88 restraintsΔρmin = −0.32 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.56053 (19)0.37231 (6)0.25979 (6)0.0190 (3)
N10.5847 (2)0.26630 (7)0.22980 (7)0.0163 (4)
N20.6671 (3)0.01670 (9)0.05279 (9)0.0245 (4)
N30.5866 (2)0.39328 (8)0.41791 (8)0.0245 (4)
C40.6016 (3)0.21000 (9)0.42677 (9)0.0167 (4)
S10.68410 (11)0.13404 (3)0.44617 (3)0.01858 (19)0.8583 (19)
C10.6115 (5)0.14171 (15)0.52389 (16)0.0192 (7)0.8583 (19)
H1A0.62700.11010.55470.023*0.8583 (19)
C20.5284 (8)0.1996 (2)0.53499 (16)0.0168 (8)0.8583 (19)
H2A0.48070.21240.57430.020*0.8583 (19)
C30.5240 (8)0.2374 (2)0.4797 (2)0.0231 (10)0.8583 (19)
H3A0.47180.27830.47910.028*0.8583 (19)
S1X0.5077 (14)0.2515 (4)0.4850 (4)0.0200 (18)*0.1417 (19)
C1X0.560 (5)0.1904 (12)0.5376 (10)0.021 (8)*0.1417 (19)
H1XA0.53490.19190.58100.025*0.1417 (19)
C2X0.643 (3)0.1399 (10)0.5079 (8)0.012 (5)*0.1417 (19)
H2XA0.67190.10110.52740.014*0.1417 (19)
C3X0.679 (3)0.1544 (8)0.4425 (9)0.0231 (10)0.14
H3XA0.74700.12840.41490.028*0.1417 (19)
C50.6017 (3)0.23136 (9)0.36009 (9)0.0163 (4)
C60.6082 (3)0.18612 (9)0.31136 (9)0.0176 (4)
H6A0.61970.14290.32170.021*
C70.5978 (3)0.20381 (9)0.24772 (9)0.0164 (4)
C80.6032 (3)0.15594 (9)0.19636 (9)0.0158 (4)
C90.5488 (3)0.09205 (9)0.20666 (9)0.0203 (4)
H9A0.50160.08000.24630.024*
C100.5641 (3)0.04666 (9)0.15893 (9)0.0201 (4)
H10A0.52530.00470.16660.024*
C110.6372 (3)0.06310 (9)0.09920 (9)0.0178 (4)
C120.6864 (3)0.12704 (9)0.08808 (9)0.0181 (4)
H12A0.73190.13920.04830.022*
C130.6680 (3)0.17231 (9)0.13553 (9)0.0171 (4)
H13A0.69950.21470.12690.021*
C140.5779 (3)0.30963 (9)0.27536 (9)0.0168 (4)
C150.5874 (3)0.29610 (9)0.34132 (9)0.0163 (4)
C160.5537 (3)0.38737 (9)0.19226 (9)0.0197 (4)
H16A0.45940.36110.17120.024*
H16B0.67540.37910.17270.024*
C170.5035 (3)0.45707 (9)0.18628 (10)0.0248 (5)
H17A0.50120.46890.14210.037*
H17B0.59610.48250.20820.037*
H17C0.38130.46440.20470.037*
C180.5861 (3)0.34927 (9)0.38470 (9)0.0181 (4)
H1N20.586 (3)−0.0177 (12)0.0555 (11)0.039 (7)*
H2N20.678 (3)0.0308 (10)0.0137 (11)0.029 (6)*
U11U22U33U12U13U23
O10.0293 (7)0.0135 (7)0.0143 (7)0.0002 (6)0.0006 (6)0.0000 (6)
N10.0175 (8)0.0123 (9)0.0191 (9)−0.0004 (7)0.0020 (7)−0.0014 (7)
N20.0355 (10)0.0196 (10)0.0184 (9)−0.0040 (8)−0.0002 (9)−0.0040 (8)
N30.0352 (10)0.0189 (10)0.0195 (9)0.0024 (8)0.0004 (8)0.0006 (8)
C40.0162 (9)0.0156 (10)0.0182 (10)0.0001 (8)−0.0005 (8)0.0003 (8)
S10.0220 (3)0.0159 (4)0.0179 (3)0.0049 (3)0.0012 (2)0.0032 (3)
C10.0239 (16)0.0225 (16)0.0113 (15)0.0003 (12)0.0022 (13)0.0024 (13)
C20.015 (2)0.0202 (19)0.0150 (15)0.0005 (13)0.0000 (11)0.0003 (10)
C30.0245 (19)0.019 (2)0.025 (2)−0.0002 (17)0.0011 (13)−0.0016 (17)
C3X0.0245 (19)0.019 (2)0.025 (2)−0.0002 (17)0.0011 (13)−0.0016 (17)
C50.0132 (9)0.0181 (10)0.0177 (10)0.0004 (8)0.0000 (8)0.0014 (8)
C60.0178 (9)0.0123 (10)0.0227 (11)0.0007 (8)0.0019 (8)0.0005 (8)
C70.0136 (9)0.0154 (10)0.0202 (10)−0.0013 (8)0.0019 (8)−0.0003 (9)
C80.0157 (9)0.0144 (10)0.0172 (10)0.0012 (8)0.0009 (8)0.0002 (8)
C90.0222 (10)0.0195 (11)0.0192 (10)−0.0001 (9)0.0026 (8)0.0016 (9)
C100.0247 (10)0.0138 (10)0.0217 (11)−0.0015 (8)−0.0007 (9)0.0009 (8)
C110.0179 (10)0.0191 (10)0.0163 (10)0.0024 (8)−0.0038 (8)−0.0024 (8)
C120.0171 (9)0.0217 (11)0.0156 (10)−0.0017 (9)−0.0013 (8)0.0029 (8)
C130.0161 (9)0.0160 (10)0.0193 (10)−0.0005 (8)−0.0008 (8)0.0015 (8)
C140.0152 (9)0.0145 (11)0.0207 (10)0.0007 (8)0.0010 (8)0.0009 (8)
C150.0146 (9)0.0169 (10)0.0174 (10)0.0003 (8)0.0020 (8)−0.0015 (8)
C160.0265 (10)0.0186 (11)0.0141 (10)−0.0010 (9)0.0004 (8)0.0002 (8)
C170.0347 (12)0.0198 (11)0.0200 (11)0.0012 (9)0.0033 (9)0.0007 (9)
C180.0197 (10)0.0173 (11)0.0173 (10)0.0019 (8)0.0009 (8)0.0048 (9)
O1—C141.352 (2)C3X—H3XA0.9300
O1—C161.452 (2)C5—C61.392 (3)
N1—C141.316 (2)C5—C151.409 (3)
N1—C71.359 (2)C6—C71.387 (3)
N2—C111.389 (2)C6—H6A0.9300
N2—H1N20.92 (2)C7—C81.469 (3)
N2—H2N20.87 (2)C8—C131.398 (3)
N3—C181.152 (2)C8—C91.403 (3)
C4—C3X1.323 (14)C9—C101.382 (3)
C4—C31.364 (5)C9—H9A0.9300
C4—C51.468 (3)C10—C111.399 (3)
C4—S1X1.638 (8)C10—H10A0.9300
C4—S11.736 (2)C11—C121.397 (3)
S1—C11.717 (3)C12—C131.378 (3)
C1—C21.361 (4)C12—H12A0.9300
C1—H1A0.9300C13—H13A0.9300
C2—C31.404 (6)C14—C151.414 (3)
C2—H2A0.9300C15—C181.434 (3)
C3—H3A0.9300C16—C171.501 (3)
S1X—C1X1.725 (17)C16—H16A0.9700
C1X—C2X1.355 (16)C16—H16B0.9700
C1X—H1XA0.9300C17—H17A0.9600
C2X—C3X1.427 (17)C17—H17B0.9600
C2X—H2XA0.9300C17—H17C0.9600
C14—O1—C16116.59 (14)N1—C7—C8116.73 (17)
C14—N1—C7117.34 (16)C6—C7—C8121.62 (17)
C11—N2—H1N2113.9 (15)C13—C8—C9117.52 (17)
C11—N2—H2N2116.0 (14)C13—C8—C7120.83 (17)
H1N2—N2—H2N2112 (2)C9—C8—C7121.63 (17)
C3X—C4—C3109.2 (9)C10—C9—C8121.11 (18)
C3X—C4—C5120.2 (8)C10—C9—H9A119.4
C3—C4—C5130.5 (3)C8—C9—H9A119.4
C3X—C4—S1X116.3 (8)C9—C10—C11120.71 (18)
C5—C4—S1X123.5 (3)C9—C10—H10A119.6
C3—C4—S1109.1 (2)C11—C10—H10A119.6
C5—C4—S1119.99 (14)N2—C11—C12120.63 (18)
S1X—C4—S1116.3 (3)N2—C11—C10120.94 (18)
C1—S1—C492.13 (12)C12—C11—C10118.39 (17)
C2—C1—S1112.0 (3)C13—C12—C11120.61 (18)
C2—C1—H1A124.0C13—C12—H12A119.7
S1—C1—H1A124.0C11—C12—H12A119.7
C1—C2—C3111.5 (3)C12—C13—C8121.57 (18)
C1—C2—H2A124.3C12—C13—H13A119.2
C3—C2—H2A124.3C8—C13—H13A119.2
C4—C3—C2115.4 (4)N1—C14—O1119.39 (17)
C4—C3—H3A122.3N1—C14—C15124.92 (17)
C2—C3—H3A122.3O1—C14—C15115.69 (16)
C4—S1X—C1X90.0 (8)C5—C15—C14117.90 (17)
C2X—C1X—S1X111.9 (15)C5—C15—C18124.26 (17)
C2X—C1X—H1XA124.1C14—C15—C18117.83 (17)
S1X—C1X—H1XA124.1O1—C16—C17107.39 (15)
C1X—C2X—C3X110.7 (16)O1—C16—H16A110.2
C1X—C2X—H2XA124.6C17—C16—H16A110.2
C3X—C2X—H2XA124.6O1—C16—H16B110.2
C4—C3X—C2X110.6 (14)C17—C16—H16B110.2
C4—C3X—H3XA124.7H16A—C16—H16B108.5
C2X—C3X—H3XA124.7C16—C17—H17A109.5
C6—C5—C15116.48 (17)C16—C17—H17B109.5
C6—C5—C4119.64 (17)H17A—C17—H17B109.5
C15—C5—C4123.82 (17)C16—C17—H17C109.5
C7—C6—C5121.69 (18)H17A—C17—H17C109.5
C7—C6—H6A119.2H17B—C17—H17C109.5
C5—C6—H6A119.2N3—C18—C15177.8 (2)
N1—C7—C6121.64 (17)
C3X—C4—S1—C193 (10)C14—N1—C7—C6−1.5 (3)
C3—C4—S1—C10.1 (3)C14—N1—C7—C8179.37 (16)
C5—C4—S1—C1−172.59 (18)C5—C6—C7—N11.4 (3)
S1X—C4—S1—C11.6 (4)C5—C6—C7—C8−179.56 (17)
C4—S1—C1—C2−0.2 (3)N1—C7—C8—C1325.1 (3)
S1—C1—C2—C30.2 (5)C6—C7—C8—C13−154.02 (19)
C3X—C4—C3—C2−5.3 (12)N1—C7—C8—C9−156.59 (17)
C5—C4—C3—C2171.7 (3)C6—C7—C8—C924.3 (3)
S1X—C4—C3—C2−170 (5)C13—C8—C9—C101.9 (3)
S1—C4—C3—C2−0.1 (5)C7—C8—C9—C10−176.49 (18)
C1—C2—C3—C4−0.1 (7)C8—C9—C10—C111.0 (3)
C3X—C4—S1X—C1X−3(2)C9—C10—C11—N2174.78 (18)
C3—C4—S1X—C1X14 (4)C9—C10—C11—C12−2.9 (3)
C5—C4—S1X—C1X176.6 (14)N2—C11—C12—C13−175.82 (17)
S1—C4—S1X—C1X2.6 (15)C10—C11—C12—C131.8 (3)
C4—S1X—C1X—C2X−2(3)C11—C12—C13—C81.1 (3)
S1X—C1X—C2X—C3X6(4)C9—C8—C13—C12−2.9 (3)
C3—C4—C3X—C2X4(2)C7—C8—C13—C12175.46 (17)
C5—C4—C3X—C2X−173.0 (13)C7—N1—C14—O1−178.52 (15)
S1X—C4—C3X—C2X6(2)C7—N1—C14—C151.5 (3)
S1—C4—C3X—C2X−85 (10)C16—O1—C14—N1−1.0 (2)
C1X—C2X—C3X—C4−8(3)C16—O1—C14—C15179.01 (16)
C3X—C4—C5—C626.4 (13)C6—C5—C15—C140.9 (3)
C3—C4—C5—C6−150.2 (4)C4—C5—C15—C14−176.28 (17)
S1X—C4—C5—C6−153.1 (5)C6—C5—C15—C18−177.58 (17)
S1—C4—C5—C620.7 (2)C4—C5—C15—C185.2 (3)
C3X—C4—C5—C15−156.5 (12)N1—C14—C15—C5−1.2 (3)
C3—C4—C5—C1526.9 (4)O1—C14—C15—C5178.77 (16)
S1X—C4—C5—C1524.1 (5)N1—C14—C15—C18177.37 (17)
S1—C4—C5—C15−162.13 (15)O1—C14—C15—C18−2.6 (3)
C15—C5—C6—C7−1.0 (3)C14—O1—C16—C17171.13 (16)
C4—C5—C6—C7176.29 (17)
Cg1 is the centroid of the major disorder component of the thiophene ring.
D—H···AD—HH···AD···AD—H···A
N2—H1N2···N3i0.92 (2)2.29 (2)3.197 (3)168.2 (19)
C3—H3A···Cg1ii0.932.933.566 (6)127
C12—H12A···Cg1iii0.932.783.430 (3)128
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the major disorder component of the thio­phene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯N3i0.92 (2)2.29 (2)3.197 (3)168.2 (19)
C3—H3ACg1ii0.932.933.566 (6)127
C12—H12ACg1iii0.932.783.430 (3)128

Symmetry codes: (i) ; (ii) ; (iii) .

  9 in total

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4.  6-(4-Bromo-phen-yl)-2-eth-oxy-4-(2,4,5-trimethoxy-phen-yl)nicotinonitrile.

Authors:  Suchada Chantrapromma; Hoong-Kun Fun; Mahesh Padaki; Thitipone Suwunwong; Arun M Isloor
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-17

5.  (2E)-1-(4-Amino-phen-yl)-3-(2-thien-yl)prop-2-en-1-one ethanol hemisolvate.

Authors:  Hoong-Kun Fun; Thawanrat Kobkeatthawin; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-26

6.  6-(4-Bromo-phen-yl)-2-eth-oxy-4-(2,4,6-trimethoxy-phen-yl)nicotinonitrile.

Authors:  Suchada Chantrapromma; Hoong-Kun Fun; Thitipone Suwunwong; Mahesh Padaki; Arun M Isloor
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-31

7.  2-Substituted-3-oxoisothiazolo[5,4-b]pyridines as potential central nervous system and antimycobacterial agents.

Authors:  W Malinka; S Ryng; M Sieklucka-Dziuba; G Rajtar; A Głowniak; Z Kleinrok
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8.  Synthesis, antimicrobial activity and conformational analysis of novel substituted pyridines: BF(3)-promoted reaction of hydrazine with 2-alkoxy pyridines.

Authors:  Fatma E Goda; Alaa A-M Abdel-Aziz; Omer A Attef
Journal:  Bioorg Med Chem       Date:  2004-04-15       Impact factor: 3.641

9.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total

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