| Literature DB >> 21588020 |
Hoong-Kun Fun, Suchada Chantrapromma, Thawanrat Kobkeatthawin, Mahesh Padaki, Arun M Isloor.
Abstract
In the title nicotinonitrile derivative, C(18)H(15)N(3)OS, the central pyridyl ring makes dihedral angles of 25.22 (10) and 24.80 (16)° with the 4-amino-phenyl and thio-phene rings, respectively. The thio-phene ring is disordered over two orientations by rotation around the C(thio-phene)-C(pyridine) bond; the occupancies are 0.858 (2) and 0.142 (2). The eth-oxy group is slightly twisted from the attached pyridyl ring [C-O-C-C torsion angle = 171.13 (16)°]. In the crystal structure, mol-ecules are linked by N-H⋯N hydrogen bonds into chains along [010]. These chains are stacked along the a axis. C-H⋯π weak inter-actions involving the thio-phene ring are observed.Entities:
Year: 2010 PMID: 21588020 PMCID: PMC3006713 DOI: 10.1107/S160053681002369X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H15N3OS | |
| Melting point = 470–471 K | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 3045 reflections |
| θ = 1.9–26.0° | |
| µ = 0.22 mm−1 | |
| Plate, yellow | |
| 0.35 × 0.11 × 0.04 mm | |
| Bruker APEXII DUO CCD area-detector diffractometer | 3045 independent reflections |
| Radiation source: sealed tube | 2188 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.0°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 34805 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3045 reflections | (Δ/σ)max < 0.001 |
| 233 parameters | Δρmax = 0.21 e Å−3 |
| 88 restraints | Δρmin = −0.32 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| O1 | 0.56053 (19) | 0.37231 (6) | 0.25979 (6) | 0.0190 (3) | |
| N1 | 0.5847 (2) | 0.26630 (7) | 0.22980 (7) | 0.0163 (4) | |
| N2 | 0.6671 (3) | 0.01670 (9) | 0.05279 (9) | 0.0245 (4) | |
| N3 | 0.5866 (2) | 0.39328 (8) | 0.41791 (8) | 0.0245 (4) | |
| C4 | 0.6016 (3) | 0.21000 (9) | 0.42677 (9) | 0.0167 (4) | |
| S1 | 0.68410 (11) | 0.13404 (3) | 0.44617 (3) | 0.01858 (19) | 0.8583 (19) |
| C1 | 0.6115 (5) | 0.14171 (15) | 0.52389 (16) | 0.0192 (7) | 0.8583 (19) |
| H1A | 0.6270 | 0.1101 | 0.5547 | 0.023* | 0.8583 (19) |
| C2 | 0.5284 (8) | 0.1996 (2) | 0.53499 (16) | 0.0168 (8) | 0.8583 (19) |
| H2A | 0.4807 | 0.2124 | 0.5743 | 0.020* | 0.8583 (19) |
| C3 | 0.5240 (8) | 0.2374 (2) | 0.4797 (2) | 0.0231 (10) | 0.8583 (19) |
| H3A | 0.4718 | 0.2783 | 0.4791 | 0.028* | 0.8583 (19) |
| S1X | 0.5077 (14) | 0.2515 (4) | 0.4850 (4) | 0.0200 (18)* | 0.1417 (19) |
| C1X | 0.560 (5) | 0.1904 (12) | 0.5376 (10) | 0.021 (8)* | 0.1417 (19) |
| H1XA | 0.5349 | 0.1919 | 0.5810 | 0.025* | 0.1417 (19) |
| C2X | 0.643 (3) | 0.1399 (10) | 0.5079 (8) | 0.012 (5)* | 0.1417 (19) |
| H2XA | 0.6719 | 0.1011 | 0.5274 | 0.014* | 0.1417 (19) |
| C3X | 0.679 (3) | 0.1544 (8) | 0.4425 (9) | 0.0231 (10) | 0.14 |
| H3XA | 0.7470 | 0.1284 | 0.4149 | 0.028* | 0.1417 (19) |
| C5 | 0.6017 (3) | 0.23136 (9) | 0.36009 (9) | 0.0163 (4) | |
| C6 | 0.6082 (3) | 0.18612 (9) | 0.31136 (9) | 0.0176 (4) | |
| H6A | 0.6197 | 0.1429 | 0.3217 | 0.021* | |
| C7 | 0.5978 (3) | 0.20381 (9) | 0.24772 (9) | 0.0164 (4) | |
| C8 | 0.6032 (3) | 0.15594 (9) | 0.19636 (9) | 0.0158 (4) | |
| C9 | 0.5488 (3) | 0.09205 (9) | 0.20666 (9) | 0.0203 (4) | |
| H9A | 0.5016 | 0.0800 | 0.2463 | 0.024* | |
| C10 | 0.5641 (3) | 0.04666 (9) | 0.15893 (9) | 0.0201 (4) | |
| H10A | 0.5253 | 0.0047 | 0.1666 | 0.024* | |
| C11 | 0.6372 (3) | 0.06310 (9) | 0.09920 (9) | 0.0178 (4) | |
| C12 | 0.6864 (3) | 0.12704 (9) | 0.08808 (9) | 0.0181 (4) | |
| H12A | 0.7319 | 0.1392 | 0.0483 | 0.022* | |
| C13 | 0.6680 (3) | 0.17231 (9) | 0.13553 (9) | 0.0171 (4) | |
| H13A | 0.6995 | 0.2147 | 0.1269 | 0.021* | |
| C14 | 0.5779 (3) | 0.30963 (9) | 0.27536 (9) | 0.0168 (4) | |
| C15 | 0.5874 (3) | 0.29610 (9) | 0.34132 (9) | 0.0163 (4) | |
| C16 | 0.5537 (3) | 0.38737 (9) | 0.19226 (9) | 0.0197 (4) | |
| H16A | 0.4594 | 0.3611 | 0.1712 | 0.024* | |
| H16B | 0.6754 | 0.3791 | 0.1727 | 0.024* | |
| C17 | 0.5035 (3) | 0.45707 (9) | 0.18628 (10) | 0.0248 (5) | |
| H17A | 0.5012 | 0.4689 | 0.1421 | 0.037* | |
| H17B | 0.5961 | 0.4825 | 0.2082 | 0.037* | |
| H17C | 0.3813 | 0.4644 | 0.2047 | 0.037* | |
| C18 | 0.5861 (3) | 0.34927 (9) | 0.38470 (9) | 0.0181 (4) | |
| H1N2 | 0.586 (3) | −0.0177 (12) | 0.0555 (11) | 0.039 (7)* | |
| H2N2 | 0.678 (3) | 0.0308 (10) | 0.0137 (11) | 0.029 (6)* |
| O1 | 0.0293 (7) | 0.0135 (7) | 0.0143 (7) | 0.0002 (6) | 0.0006 (6) | 0.0000 (6) |
| N1 | 0.0175 (8) | 0.0123 (9) | 0.0191 (9) | −0.0004 (7) | 0.0020 (7) | −0.0014 (7) |
| N2 | 0.0355 (10) | 0.0196 (10) | 0.0184 (9) | −0.0040 (8) | −0.0002 (9) | −0.0040 (8) |
| N3 | 0.0352 (10) | 0.0189 (10) | 0.0195 (9) | 0.0024 (8) | 0.0004 (8) | 0.0006 (8) |
| C4 | 0.0162 (9) | 0.0156 (10) | 0.0182 (10) | 0.0001 (8) | −0.0005 (8) | 0.0003 (8) |
| S1 | 0.0220 (3) | 0.0159 (4) | 0.0179 (3) | 0.0049 (3) | 0.0012 (2) | 0.0032 (3) |
| C1 | 0.0239 (16) | 0.0225 (16) | 0.0113 (15) | 0.0003 (12) | 0.0022 (13) | 0.0024 (13) |
| C2 | 0.015 (2) | 0.0202 (19) | 0.0150 (15) | 0.0005 (13) | 0.0000 (11) | 0.0003 (10) |
| C3 | 0.0245 (19) | 0.019 (2) | 0.025 (2) | −0.0002 (17) | 0.0011 (13) | −0.0016 (17) |
| C3X | 0.0245 (19) | 0.019 (2) | 0.025 (2) | −0.0002 (17) | 0.0011 (13) | −0.0016 (17) |
| C5 | 0.0132 (9) | 0.0181 (10) | 0.0177 (10) | 0.0004 (8) | 0.0000 (8) | 0.0014 (8) |
| C6 | 0.0178 (9) | 0.0123 (10) | 0.0227 (11) | 0.0007 (8) | 0.0019 (8) | 0.0005 (8) |
| C7 | 0.0136 (9) | 0.0154 (10) | 0.0202 (10) | −0.0013 (8) | 0.0019 (8) | −0.0003 (9) |
| C8 | 0.0157 (9) | 0.0144 (10) | 0.0172 (10) | 0.0012 (8) | 0.0009 (8) | 0.0002 (8) |
| C9 | 0.0222 (10) | 0.0195 (11) | 0.0192 (10) | −0.0001 (9) | 0.0026 (8) | 0.0016 (9) |
| C10 | 0.0247 (10) | 0.0138 (10) | 0.0217 (11) | −0.0015 (8) | −0.0007 (9) | 0.0009 (8) |
| C11 | 0.0179 (10) | 0.0191 (10) | 0.0163 (10) | 0.0024 (8) | −0.0038 (8) | −0.0024 (8) |
| C12 | 0.0171 (9) | 0.0217 (11) | 0.0156 (10) | −0.0017 (9) | −0.0013 (8) | 0.0029 (8) |
| C13 | 0.0161 (9) | 0.0160 (10) | 0.0193 (10) | −0.0005 (8) | −0.0008 (8) | 0.0015 (8) |
| C14 | 0.0152 (9) | 0.0145 (11) | 0.0207 (10) | 0.0007 (8) | 0.0010 (8) | 0.0009 (8) |
| C15 | 0.0146 (9) | 0.0169 (10) | 0.0174 (10) | 0.0003 (8) | 0.0020 (8) | −0.0015 (8) |
| C16 | 0.0265 (10) | 0.0186 (11) | 0.0141 (10) | −0.0010 (9) | 0.0004 (8) | 0.0002 (8) |
| C17 | 0.0347 (12) | 0.0198 (11) | 0.0200 (11) | 0.0012 (9) | 0.0033 (9) | 0.0007 (9) |
| C18 | 0.0197 (10) | 0.0173 (11) | 0.0173 (10) | 0.0019 (8) | 0.0009 (8) | 0.0048 (9) |
| O1—C14 | 1.352 (2) | C3X—H3XA | 0.9300 |
| O1—C16 | 1.452 (2) | C5—C6 | 1.392 (3) |
| N1—C14 | 1.316 (2) | C5—C15 | 1.409 (3) |
| N1—C7 | 1.359 (2) | C6—C7 | 1.387 (3) |
| N2—C11 | 1.389 (2) | C6—H6A | 0.9300 |
| N2—H1N2 | 0.92 (2) | C7—C8 | 1.469 (3) |
| N2—H2N2 | 0.87 (2) | C8—C13 | 1.398 (3) |
| N3—C18 | 1.152 (2) | C8—C9 | 1.403 (3) |
| C4—C3X | 1.323 (14) | C9—C10 | 1.382 (3) |
| C4—C3 | 1.364 (5) | C9—H9A | 0.9300 |
| C4—C5 | 1.468 (3) | C10—C11 | 1.399 (3) |
| C4—S1X | 1.638 (8) | C10—H10A | 0.9300 |
| C4—S1 | 1.736 (2) | C11—C12 | 1.397 (3) |
| S1—C1 | 1.717 (3) | C12—C13 | 1.378 (3) |
| C1—C2 | 1.361 (4) | C12—H12A | 0.9300 |
| C1—H1A | 0.9300 | C13—H13A | 0.9300 |
| C2—C3 | 1.404 (6) | C14—C15 | 1.414 (3) |
| C2—H2A | 0.9300 | C15—C18 | 1.434 (3) |
| C3—H3A | 0.9300 | C16—C17 | 1.501 (3) |
| S1X—C1X | 1.725 (17) | C16—H16A | 0.9700 |
| C1X—C2X | 1.355 (16) | C16—H16B | 0.9700 |
| C1X—H1XA | 0.9300 | C17—H17A | 0.9600 |
| C2X—C3X | 1.427 (17) | C17—H17B | 0.9600 |
| C2X—H2XA | 0.9300 | C17—H17C | 0.9600 |
| C14—O1—C16 | 116.59 (14) | N1—C7—C8 | 116.73 (17) |
| C14—N1—C7 | 117.34 (16) | C6—C7—C8 | 121.62 (17) |
| C11—N2—H1N2 | 113.9 (15) | C13—C8—C9 | 117.52 (17) |
| C11—N2—H2N2 | 116.0 (14) | C13—C8—C7 | 120.83 (17) |
| H1N2—N2—H2N2 | 112 (2) | C9—C8—C7 | 121.63 (17) |
| C3X—C4—C3 | 109.2 (9) | C10—C9—C8 | 121.11 (18) |
| C3X—C4—C5 | 120.2 (8) | C10—C9—H9A | 119.4 |
| C3—C4—C5 | 130.5 (3) | C8—C9—H9A | 119.4 |
| C3X—C4—S1X | 116.3 (8) | C9—C10—C11 | 120.71 (18) |
| C5—C4—S1X | 123.5 (3) | C9—C10—H10A | 119.6 |
| C3—C4—S1 | 109.1 (2) | C11—C10—H10A | 119.6 |
| C5—C4—S1 | 119.99 (14) | N2—C11—C12 | 120.63 (18) |
| S1X—C4—S1 | 116.3 (3) | N2—C11—C10 | 120.94 (18) |
| C1—S1—C4 | 92.13 (12) | C12—C11—C10 | 118.39 (17) |
| C2—C1—S1 | 112.0 (3) | C13—C12—C11 | 120.61 (18) |
| C2—C1—H1A | 124.0 | C13—C12—H12A | 119.7 |
| S1—C1—H1A | 124.0 | C11—C12—H12A | 119.7 |
| C1—C2—C3 | 111.5 (3) | C12—C13—C8 | 121.57 (18) |
| C1—C2—H2A | 124.3 | C12—C13—H13A | 119.2 |
| C3—C2—H2A | 124.3 | C8—C13—H13A | 119.2 |
| C4—C3—C2 | 115.4 (4) | N1—C14—O1 | 119.39 (17) |
| C4—C3—H3A | 122.3 | N1—C14—C15 | 124.92 (17) |
| C2—C3—H3A | 122.3 | O1—C14—C15 | 115.69 (16) |
| C4—S1X—C1X | 90.0 (8) | C5—C15—C14 | 117.90 (17) |
| C2X—C1X—S1X | 111.9 (15) | C5—C15—C18 | 124.26 (17) |
| C2X—C1X—H1XA | 124.1 | C14—C15—C18 | 117.83 (17) |
| S1X—C1X—H1XA | 124.1 | O1—C16—C17 | 107.39 (15) |
| C1X—C2X—C3X | 110.7 (16) | O1—C16—H16A | 110.2 |
| C1X—C2X—H2XA | 124.6 | C17—C16—H16A | 110.2 |
| C3X—C2X—H2XA | 124.6 | O1—C16—H16B | 110.2 |
| C4—C3X—C2X | 110.6 (14) | C17—C16—H16B | 110.2 |
| C4—C3X—H3XA | 124.7 | H16A—C16—H16B | 108.5 |
| C2X—C3X—H3XA | 124.7 | C16—C17—H17A | 109.5 |
| C6—C5—C15 | 116.48 (17) | C16—C17—H17B | 109.5 |
| C6—C5—C4 | 119.64 (17) | H17A—C17—H17B | 109.5 |
| C15—C5—C4 | 123.82 (17) | C16—C17—H17C | 109.5 |
| C7—C6—C5 | 121.69 (18) | H17A—C17—H17C | 109.5 |
| C7—C6—H6A | 119.2 | H17B—C17—H17C | 109.5 |
| C5—C6—H6A | 119.2 | N3—C18—C15 | 177.8 (2) |
| N1—C7—C6 | 121.64 (17) | ||
| C3X—C4—S1—C1 | 93 (10) | C14—N1—C7—C6 | −1.5 (3) |
| C3—C4—S1—C1 | 0.1 (3) | C14—N1—C7—C8 | 179.37 (16) |
| C5—C4—S1—C1 | −172.59 (18) | C5—C6—C7—N1 | 1.4 (3) |
| S1X—C4—S1—C1 | 1.6 (4) | C5—C6—C7—C8 | −179.56 (17) |
| C4—S1—C1—C2 | −0.2 (3) | N1—C7—C8—C13 | 25.1 (3) |
| S1—C1—C2—C3 | 0.2 (5) | C6—C7—C8—C13 | −154.02 (19) |
| C3X—C4—C3—C2 | −5.3 (12) | N1—C7—C8—C9 | −156.59 (17) |
| C5—C4—C3—C2 | 171.7 (3) | C6—C7—C8—C9 | 24.3 (3) |
| S1X—C4—C3—C2 | −170 (5) | C13—C8—C9—C10 | 1.9 (3) |
| S1—C4—C3—C2 | −0.1 (5) | C7—C8—C9—C10 | −176.49 (18) |
| C1—C2—C3—C4 | −0.1 (7) | C8—C9—C10—C11 | 1.0 (3) |
| C3X—C4—S1X—C1X | −3(2) | C9—C10—C11—N2 | 174.78 (18) |
| C3—C4—S1X—C1X | 14 (4) | C9—C10—C11—C12 | −2.9 (3) |
| C5—C4—S1X—C1X | 176.6 (14) | N2—C11—C12—C13 | −175.82 (17) |
| S1—C4—S1X—C1X | 2.6 (15) | C10—C11—C12—C13 | 1.8 (3) |
| C4—S1X—C1X—C2X | −2(3) | C11—C12—C13—C8 | 1.1 (3) |
| S1X—C1X—C2X—C3X | 6(4) | C9—C8—C13—C12 | −2.9 (3) |
| C3—C4—C3X—C2X | 4(2) | C7—C8—C13—C12 | 175.46 (17) |
| C5—C4—C3X—C2X | −173.0 (13) | C7—N1—C14—O1 | −178.52 (15) |
| S1X—C4—C3X—C2X | 6(2) | C7—N1—C14—C15 | 1.5 (3) |
| S1—C4—C3X—C2X | −85 (10) | C16—O1—C14—N1 | −1.0 (2) |
| C1X—C2X—C3X—C4 | −8(3) | C16—O1—C14—C15 | 179.01 (16) |
| C3X—C4—C5—C6 | 26.4 (13) | C6—C5—C15—C14 | 0.9 (3) |
| C3—C4—C5—C6 | −150.2 (4) | C4—C5—C15—C14 | −176.28 (17) |
| S1X—C4—C5—C6 | −153.1 (5) | C6—C5—C15—C18 | −177.58 (17) |
| S1—C4—C5—C6 | 20.7 (2) | C4—C5—C15—C18 | 5.2 (3) |
| C3X—C4—C5—C15 | −156.5 (12) | N1—C14—C15—C5 | −1.2 (3) |
| C3—C4—C5—C15 | 26.9 (4) | O1—C14—C15—C5 | 178.77 (16) |
| S1X—C4—C5—C15 | 24.1 (5) | N1—C14—C15—C18 | 177.37 (17) |
| S1—C4—C5—C15 | −162.13 (15) | O1—C14—C15—C18 | −2.6 (3) |
| C15—C5—C6—C7 | −1.0 (3) | C14—O1—C16—C17 | 171.13 (16) |
| C4—C5—C6—C7 | 176.29 (17) |
| Cg1 is the centroid of the major disorder component of the thiophene ring. |
| H··· | ||||
| N2—H1N2···N3i | 0.92 (2) | 2.29 (2) | 3.197 (3) | 168.2 (19) |
| C3—H3A···Cg1ii | 0.93 | 2.93 | 3.566 (6) | 127 |
| C12—H12A···Cg1iii | 0.93 | 2.78 | 3.430 (3) | 128 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the major disorder component of the thiophene ring.
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.92 (2) | 2.29 (2) | 3.197 (3) | 168.2 (19) |
| C3—H3 | 0.93 | 2.93 | 3.566 (6) | 127 |
| C12—H12 | 0.93 | 2.78 | 3.430 (3) | 128 |
Symmetry codes: (i) ; (ii) ; (iii) .