Literature DB >> 21588012

N-(3-Butyl-4-oxo-1,3-thia-zolidin-2-yl-idene)benzamide.

Hua-Rong Zhao1, Hai-Yan Wang, Xiang-Wu Meng.   

Abstract

In the title compound, C(14)H(16)N(2)O(2)S, the thia-zolidine ring is planar [maximum atomic deviation = 0.0080 (14) Å] and twisted slightly with respect to the phenyl ring, making a dihedral angle of 4.46 (14)°. The butyl group displays an extended conformation, with a torsion angle of 169.4 (4)°. In the crystal structure, weak inter-molecular C-H⋯O hydrogen bonds link the mol-ecules, forming supra-molecular chains.

Entities:  

Year:  2010        PMID: 21588012      PMCID: PMC3006835          DOI: 10.1107/S1600536810020556

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmaceutical applications of thia­zolidinones, see: Amin et al. (2008 ▶); Ramla et al. (2007 ▶). For the synthesis, see: Peng et al. (2004 ▶).

Experimental

Crystal data

C14H16N2O2S M = 276.35 Monoclinic, a = 5.4690 (1) Å b = 30.5591 (8) Å c = 8.6032 (2) Å β = 99.895 (3)° V = 1416.44 (6) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 294 K 0.50 × 0.14 × 0.07 mm

Data collection

Oxford Diffraction Nova A diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2008 ▶) T min = 0.895, T max = 0.984 7446 measured reflections 2530 independent reflections 1987 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.129 S = 1.06 2530 reflections 174 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and OLEX2 (Dolomanov et al., 2009 ▶).; software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810020556/sj2789sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810020556/sj2789Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H16N2O2SF(000) = 584
Mr = 276.35Dx = 1.296 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3174 reflections
a = 5.4690 (1) Åθ = 2.8–25.0°
b = 30.5591 (8) ŵ = 0.23 mm1
c = 8.6032 (2) ÅT = 294 K
β = 99.895 (3)°Platelet, yellow
V = 1416.44 (6) Å30.50 × 0.14 × 0.07 mm
Z = 4
Oxford Diffraction Nova A diffractometer2530 independent reflections
Radiation source: fine-focus sealed tube1987 reflections with I > 2σ(I)
graphiteRint = 0.026
ω scansθmax = 25.1°, θmin = 1.3°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2008)h = −6→3
Tmin = 0.895, Tmax = 0.984k = −36→36
7446 measured reflectionsl = −10→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.129w = 1/[σ2(Fo2) + (0.0615P)2 + 0.3856P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
2530 reflectionsΔρmax = 0.20 e Å3
174 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0113 (18)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.28923 (11)0.210301 (19)0.34733 (8)0.0680 (2)
N10.0399 (3)0.14912 (6)0.1466 (2)0.0568 (5)
N20.4097 (3)0.12988 (6)0.3021 (2)0.0604 (5)
O1−0.1307 (3)0.21815 (6)0.1475 (2)0.0846 (6)
O20.7761 (3)0.11970 (7)0.4680 (2)0.0903 (6)
C1−0.3441 (4)0.12483 (8)−0.0946 (3)0.0675 (6)
H1−0.21200.1058−0.06370.081*
C2−0.5428 (5)0.11225 (10)−0.2086 (3)0.0834 (8)
H2−0.54350.0846−0.25400.100*
C3−0.7382 (5)0.14015 (11)−0.2550 (3)0.0850 (8)
H3−0.87110.1313−0.33100.102*
C4−0.7377 (4)0.18069 (11)−0.1902 (3)0.0798 (8)
H4−0.86970.1996−0.22280.096*
C5−0.5429 (4)0.19391 (8)−0.0765 (3)0.0674 (6)
H5−0.54410.2217−0.03220.081*
C6−0.3447 (4)0.16583 (7)−0.0278 (2)0.0555 (5)
C7−0.1369 (4)0.18080 (7)0.0965 (3)0.0588 (5)
C80.2273 (4)0.16005 (7)0.2522 (2)0.0543 (5)
C90.6056 (4)0.14333 (9)0.4145 (3)0.0669 (6)
C100.5774 (4)0.19006 (9)0.4582 (3)0.0740 (7)
H10A0.71540.20710.43380.089*
H10B0.57560.19250.57040.089*
C110.4005 (4)0.08576 (8)0.2365 (3)0.0693 (6)
H11A0.56830.07460.24520.083*
H11B0.32890.08700.12530.083*
C120.2517 (5)0.05489 (9)0.3177 (4)0.0900 (8)
H12A0.08710.06690.31600.108*
H12B0.33030.05160.42710.108*
C130.2296 (8)0.01017 (11)0.2380 (6)0.1436 (17)
H13A0.18310.01460.12510.172*
H13B0.3921−0.00350.25640.172*
C140.0574 (10)−0.01942 (15)0.2872 (8)0.194 (3)
H14A0.0878−0.02140.40020.291*
H14B0.0767−0.04780.24300.291*
H14C−0.1084−0.00910.25150.291*
U11U22U33U12U13U23
S10.0674 (4)0.0599 (4)0.0716 (4)−0.0109 (3)−0.0022 (3)−0.0083 (3)
N10.0544 (10)0.0541 (10)0.0564 (10)−0.0011 (8)−0.0061 (8)0.0013 (8)
N20.0529 (10)0.0640 (11)0.0592 (10)0.0002 (8)−0.0045 (8)0.0004 (9)
O10.0866 (12)0.0620 (10)0.0931 (13)0.0110 (8)−0.0190 (10)−0.0116 (9)
O20.0606 (10)0.1150 (15)0.0852 (12)0.0086 (10)−0.0155 (9)0.0012 (11)
C10.0633 (13)0.0679 (14)0.0656 (14)−0.0014 (11)−0.0054 (11)−0.0005 (11)
C20.0786 (17)0.0852 (18)0.0781 (17)−0.0140 (14)−0.0104 (13)−0.0076 (14)
C30.0620 (15)0.115 (2)0.0689 (16)−0.0187 (15)−0.0132 (12)0.0112 (16)
C40.0534 (13)0.102 (2)0.0792 (17)0.0026 (13)−0.0040 (12)0.0219 (16)
C50.0577 (13)0.0705 (14)0.0714 (14)0.0035 (11)0.0035 (11)0.0101 (12)
C60.0495 (11)0.0596 (12)0.0548 (11)−0.0026 (9)0.0021 (9)0.0075 (10)
C70.0584 (12)0.0539 (12)0.0606 (12)0.0001 (10)0.0001 (10)0.0009 (10)
C80.0534 (11)0.0540 (12)0.0531 (11)−0.0059 (9)0.0027 (9)0.0013 (9)
C90.0506 (12)0.0865 (17)0.0590 (13)−0.0085 (11)−0.0035 (10)0.0037 (12)
C100.0615 (14)0.0884 (18)0.0669 (14)−0.0221 (12)−0.0039 (11)−0.0040 (13)
C110.0608 (13)0.0674 (14)0.0751 (15)0.0091 (11)−0.0013 (11)−0.0030 (12)
C120.0860 (19)0.0689 (16)0.114 (2)0.0021 (14)0.0156 (17)−0.0020 (16)
C130.144 (3)0.0650 (19)0.234 (5)−0.012 (2)0.068 (3)−0.017 (3)
C140.179 (5)0.108 (3)0.313 (8)−0.038 (3)0.093 (5)−0.040 (4)
S1—C81.746 (2)C5—C61.390 (3)
S1—C101.805 (2)C5—H50.9300
N1—C81.291 (3)C6—C71.492 (3)
N1—C71.384 (3)C9—C101.491 (4)
N2—C81.372 (3)C10—H10A0.9700
N2—C91.377 (3)C10—H10B0.9700
N2—C111.459 (3)C11—C121.495 (4)
O1—C71.221 (3)C11—H11A0.9700
O2—C91.206 (3)C11—H11B0.9700
C1—C61.379 (3)C12—C131.525 (5)
C1—C21.387 (3)C12—H12A0.9700
C1—H10.9300C12—H12B0.9700
C2—C31.372 (4)C13—C141.421 (5)
C2—H20.9300C13—H13A0.9700
C3—C41.359 (4)C13—H13B0.9700
C3—H30.9300C14—H14A0.9600
C4—C51.377 (3)C14—H14B0.9600
C4—H40.9300C14—H14C0.9600
C8—S1—C1091.59 (11)N2—C9—C10111.2 (2)
C8—N1—C7117.76 (19)C9—C10—S1108.30 (15)
C8—N2—C9117.08 (19)C9—C10—H10A110.0
C8—N2—C11121.66 (17)S1—C10—H10A110.0
C9—N2—C11121.24 (19)C9—C10—H10B110.0
C6—C1—C2119.3 (2)S1—C10—H10B110.0
C6—C1—H1120.4H10A—C10—H10B108.4
C2—C1—H1120.4N2—C11—C12112.8 (2)
C3—C2—C1120.7 (3)N2—C11—H11A109.0
C3—C2—H2119.7C12—C11—H11A109.0
C1—C2—H2119.7N2—C11—H11B109.0
C4—C3—C2120.0 (2)C12—C11—H11B109.0
C4—C3—H3120.0H11A—C11—H11B107.8
C2—C3—H3120.0C11—C12—C13111.3 (3)
C3—C4—C5120.4 (2)C11—C12—H12A109.4
C3—C4—H4119.8C13—C12—H12A109.4
C5—C4—H4119.8C11—C12—H12B109.4
C4—C5—C6120.1 (2)C13—C12—H12B109.4
C4—C5—H5120.0H12A—C12—H12B108.0
C6—C5—H5120.0C14—C13—C12116.2 (4)
C1—C6—C5119.5 (2)C14—C13—H13A108.2
C1—C6—C7121.44 (19)C12—C13—H13A108.2
C5—C6—C7119.0 (2)C14—C13—H13B108.2
O1—C7—N1124.6 (2)C12—C13—H13B108.2
O1—C7—C6121.0 (2)H13A—C13—H13B107.4
N1—C7—C6114.46 (19)C13—C14—H14A109.5
N1—C8—N2119.52 (19)C13—C14—H14B109.5
N1—C8—S1128.62 (17)H14A—C14—H14B109.5
N2—C8—S1111.86 (14)C13—C14—H14C109.5
O2—C9—N2123.1 (2)H14A—C14—H14C109.5
O2—C9—C10125.7 (2)H14B—C14—H14C109.5
C6—C1—C2—C30.1 (4)C11—N2—C8—N11.3 (3)
C1—C2—C3—C40.5 (4)C9—N2—C8—S1−0.2 (3)
C2—C3—C4—C5−0.7 (4)C11—N2—C8—S1−178.67 (17)
C3—C4—C5—C60.3 (4)C10—S1—C8—N1−179.2 (2)
C2—C1—C6—C5−0.5 (4)C10—S1—C8—N20.77 (18)
C2—C1—C6—C7179.3 (2)C8—N2—C9—O2179.6 (2)
C4—C5—C6—C10.3 (4)C11—N2—C9—O2−1.9 (4)
C4—C5—C6—C7−179.5 (2)C8—N2—C9—C10−0.7 (3)
C8—N1—C7—O1−1.5 (4)C11—N2—C9—C10177.8 (2)
C8—N1—C7—C6178.87 (18)O2—C9—C10—S1−179.1 (2)
C1—C6—C7—O1175.0 (2)N2—C9—C10—S11.2 (3)
C5—C6—C7—O1−5.1 (3)C8—S1—C10—C9−1.12 (19)
C1—C6—C7—N1−5.3 (3)C8—N2—C11—C12−85.8 (3)
C5—C6—C7—N1174.51 (19)C9—N2—C11—C1295.8 (3)
C7—N1—C8—N2−178.42 (19)N2—C11—C12—C13175.6 (3)
C7—N1—C8—S11.5 (3)C11—C12—C13—C14−169.4 (4)
C9—N2—C8—N1179.8 (2)
D—H···AD—HH···AD···AD—H···A
C3—H3···O2i0.932.393.309 (3)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O2i0.932.393.309 (3)172

Symmetry code: (i) .

  3 in total

1.  Synthesis and inhibitory activity of new benzimidazole derivatives against Burkitt's lymphoma promotion.

Authors:  Mostafa M Ramla; Mohamed A Omar; H Tokuda; Hoda I El-Diwani
Journal:  Bioorg Med Chem       Date:  2007-04-10       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and preliminary evaluation of some substituted coumarins as anticonvulsant agents.

Authors:  Kamelia M Amin; Doaa E Abdel Rahman; Yasmin A Al-Eryani
Journal:  Bioorg Med Chem       Date:  2008-04-15       Impact factor: 3.641

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.