Literature DB >> 21587997

Benz-yl(meth-yl)phosphinic acid.

Cécile Fougère, Erwann Guénin, Pascal Retailleau, Carole Barbey.   

Abstract

The title compound, C(8)H(11)O(2)P, is a phosphinic compound with a tetra-coordinate penta-valent P atom. The phosphinic function plays a predominant role in the cohesion of the crystal structure, both by forming chains along the b axis via strong inter-molecular O-H⋯O hydrogen bonds and by cross-linking these chains perpendicularly via weak inter-molecular C-H⋯O hydrogen bonds, generating a two-dimensional network parallel to (001).

Entities:  

Year:  2010        PMID: 21587997      PMCID: PMC3006977          DOI: 10.1107/S1600536810024116

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to phosphinic compounds and their biological applications, see: Ye et al. (2007 ▶); Abrunhosa-Thomas et al. (2007 ▶); Wang et al. (2009 ▶). For their inhibitor properties and use as anti­bacterial agents, see: Boyd et al. (1994 ▶); Matziari et al. (2004 ▶); Ryglowski & Kafarski (1996 ▶). For the preparation of phosphinic acid, see: Montchamp (2005 ▶); Dingwall et al. (1989 ▶); Fougère et al. (2009 ▶). For related structures, see: Frantz et al. (2003 ▶); Langley et al. (1996 ▶); Cai et al. (2003 ▶); Meyer et al. (2003 ▶).

Experimental

Crystal data

C8H11O2P M = 170.14 Monoclinic, a = 9.3075 (4) Å b = 8.2526 (4) Å c = 11.8890 (4) Å β = 108.657 (3)° V = 865.22 (6) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 293 K 0.60 × 0.25 × 0.06 mm

Data collection

Nonius KappaCCD diffractometer 10548 measured reflections 1767 independent reflections 1320 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.096 S = 1.05 1767 reflections 100 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.29 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: HKL (Otwinowski & Minor, 1997 ▶); data reduction: COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and CrystalBuilder (Welter, 2006 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810024116/dn2573sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024116/dn2573Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H11O2PF(000) = 360
Mr = 170.14Dx = 1.306 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ybcCell parameters from 1896 reflections
a = 9.3075 (4) Åθ = 0.4–26.4°
b = 8.2526 (4) ŵ = 0.27 mm1
c = 11.8890 (4) ÅT = 293 K
β = 108.657 (3)°Parallelepipedic, colourless
V = 865.22 (6) Å30.60 × 0.25 × 0.06 mm
Z = 4
Nonius KappaCCD diffractometer1320 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.050
graphiteθmax = 26.3°, θmin = 2.3°
Detector resolution: 9 pixels mm-1h = −11→11
φ and ω scansk = −10→10
10548 measured reflectionsl = −14→14
1767 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0381P)2 + 0.2898P] where P = (Fo2 + 2Fc2)/3
1767 reflections(Δ/σ)max < 0.001
100 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.37056 (5)0.18896 (6)0.22698 (4)0.03697 (18)
C10.3422 (3)0.2500 (3)0.36151 (18)0.0574 (6)
H110.34500.15660.41030.086*
H120.24540.30230.34410.086*
H130.42090.32410.40290.086*
O10.36315 (16)0.34293 (17)0.15063 (12)0.0487 (4)
H10.41890.41280.19090.058*
O20.51352 (16)0.09571 (18)0.24906 (16)0.0606 (4)
C20.2113 (2)0.0707 (2)0.14174 (19)0.0440 (5)
H210.22280.04880.06490.066*
H220.2144−0.03260.18140.066*
C30.0567 (2)0.1455 (2)0.12169 (17)0.0376 (5)
C4−0.0016 (3)0.2590 (3)0.03332 (17)0.0485 (5)
H40.05570.2914−0.01400.058*
C5−0.1435 (3)0.3248 (3)0.0144 (2)0.0618 (7)
H5−0.18120.4011−0.04540.074*
C6−0.2295 (3)0.2779 (3)0.0838 (2)0.0640 (7)
H6−0.32550.32180.07090.077*
C7−0.1734 (3)0.1669 (3)0.1716 (2)0.0613 (7)
H7−0.23120.13520.21870.074*
C8−0.0310 (2)0.1011 (3)0.19124 (19)0.0509 (6)
H80.00640.02600.25190.061*
U11U22U33U12U13U23
P10.0327 (3)0.0317 (3)0.0455 (3)0.0038 (2)0.0113 (2)0.0036 (2)
C10.0587 (14)0.0668 (16)0.0453 (12)−0.0012 (12)0.0147 (10)0.0005 (12)
O10.0563 (9)0.0378 (9)0.0471 (8)−0.0077 (7)0.0097 (6)0.0053 (6)
O20.0367 (8)0.0452 (9)0.0993 (12)0.0114 (7)0.0209 (8)0.0051 (9)
C20.0418 (11)0.0336 (11)0.0557 (12)−0.0018 (9)0.0143 (9)−0.0032 (9)
C30.0343 (10)0.0351 (11)0.0406 (10)−0.0066 (8)0.0081 (8)−0.0062 (8)
C40.0508 (12)0.0475 (13)0.0442 (11)−0.0013 (11)0.0111 (10)0.0027 (10)
C50.0581 (15)0.0499 (15)0.0602 (14)0.0081 (12)−0.0050 (11)−0.0017 (12)
C60.0364 (12)0.0625 (17)0.0836 (17)0.0008 (12)0.0061 (12)−0.0282 (15)
C70.0463 (13)0.0689 (17)0.0751 (16)−0.0124 (13)0.0284 (12)−0.0164 (14)
C80.0471 (13)0.0531 (14)0.0525 (12)−0.0080 (11)0.0159 (10)0.0034 (11)
P1—O21.4859 (14)C3—C41.382 (3)
P1—O11.5502 (14)C3—C81.384 (3)
P1—C11.775 (2)C4—C51.378 (3)
P1—C21.793 (2)C4—H40.9300
C1—H110.9600C5—C61.377 (4)
C1—H120.9600C5—H50.9300
C1—H130.9600C6—C71.361 (4)
O1—H10.8200C6—H60.9300
C2—C31.514 (3)C7—C81.381 (3)
C2—H210.9700C7—H70.9300
C2—H220.9700C8—H80.9300
O2—P1—O1113.42 (9)C4—C3—C8118.07 (19)
O2—P1—C1111.74 (11)C4—C3—C2121.23 (18)
O1—P1—C1107.66 (10)C8—C3—C2120.70 (18)
O2—P1—C2110.46 (9)C5—C4—C3120.9 (2)
O1—P1—C2103.96 (9)C5—C4—H4119.5
C1—P1—C2109.24 (10)C3—C4—H4119.5
P1—C1—H11109.5C6—C5—C4120.1 (2)
P1—C1—H12109.5C6—C5—H5119.9
H11—C1—H12109.5C4—C5—H5119.9
P1—C1—H13109.5C7—C6—C5119.6 (2)
H11—C1—H13109.5C7—C6—H6120.2
H12—C1—H13109.5C5—C6—H6120.2
P1—O1—H1109.5C6—C7—C8120.5 (2)
C3—C2—P1116.08 (14)C6—C7—H7119.8
C3—C2—H21108.3C8—C7—H7119.8
P1—C2—H21108.3C7—C8—C3120.8 (2)
C3—C2—H22108.3C7—C8—H8119.6
P1—C2—H22108.3C3—C8—H8119.6
H21—C2—H22107.4
O2—P1—C2—C3174.91 (15)C3—C4—C5—C60.0 (3)
O1—P1—C2—C3−63.09 (17)C4—C5—C6—C70.3 (4)
C1—P1—C2—C351.61 (18)C5—C6—C7—C8−0.1 (4)
P1—C2—C3—C481.4 (2)C6—C7—C8—C3−0.5 (4)
P1—C2—C3—C8−99.0 (2)C4—C3—C8—C70.8 (3)
C8—C3—C4—C5−0.6 (3)C2—C3—C8—C7−178.8 (2)
C2—C3—C4—C5179.01 (19)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.821.702.493 (2)162
C7—H7···O2ii0.932.543.377 (3)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O2i0.821.702.493 (2)162
C7—H7⋯O2ii0.932.543.377 (3)151

Symmetry codes: (i) ; (ii) .

  8 in total

1.  Evaluation of P1'-diversified phosphinic peptides leads to the development of highly selective inhibitors of MMP-11.

Authors:  Magdalini Matziari; Fabrice Beau; Philippe Cuniasse; Vincent Dive; Athanasios Yiotakis
Journal:  J Med Chem       Date:  2004-01-15       Impact factor: 7.446

Review 2.  Interactions with aromatic rings in chemical and biological recognition.

Authors:  Emmanuel A Meyer; Ronald K Castellano; François Diederich
Journal:  Angew Chem Int Ed Engl       Date:  2003-03-17       Impact factor: 15.336

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Alkylation of H-phosphinate esters under basic conditions.

Authors:  Isabelle Abrunhosa-Thomas; Claire E Sellers; Jean-Luc Montchamp
Journal:  J Org Chem       Date:  2007-03-13       Impact factor: 4.354

5.  Design, synthesis, and metal binding of novel Pseudo- oligopeptides containing two phosphinic acid groups.

Authors:  Yunpeng Ye; Min Liu; Jeff L-F Kao; Garland R Marshall
Journal:  Biopolymers       Date:  2008-01       Impact factor: 2.505

6.  Stereoselective synthesis of alpha-amino(phenyl)methyl(phenyl)phosphinic acids with O-pivaloylated D-galactosylamine as chiral auxiliary.

Authors:  Yadan Wang; Yangyun Wang; Jipan Yu; Zhiwei Miao; Ruyu Chen
Journal:  Chemistry       Date:  2009-09-21       Impact factor: 5.236

7.  Synthesis and solid-state NMR studies of p-vinylbenzylphosphonic acid.

Authors:  Richard Frantz; Jean-Olivier Durand; Francis Carré; Gérard F Lanneau; Jean Le Bideau; Bruno Alonso; Dominique Massiot
Journal:  Chemistry       Date:  2003-02-03       Impact factor: 5.236

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.