Literature DB >> 21587996

4-[2-(2,2-Dimethyl-4,6-dioxo-1,3-dioxan-5-yl-idene)hydrazin-1-yl]benzo-nitrile.

Naki Colak, Yılmaz Yıldırır, Barış Tercan, Emel Ermiş, Tuncer Hökelek.   

Abstract

In the title compound, C(13)H(11)N(3)O(4), the n class="Chemical">dioxane ring adopts an envelope conformation with the C atom bonded to the dimethyl group in the flap position [deviation = 0.613 (1) Å]. The nitrile group and the attached benzene ring are roughly coplanar [maximum deviation = 0.087 (1) Å]. An intra-molecular N-H⋯O hydrogen bond involving the hydrazinyl group generates an S(6) ring. The N-N and C-N bond lengths indicate that the compound may be a mixture of the azo and hydrazone tautomeric forms but the presence of the N-bound H atom supports the hydrazone form. The crystal structure is stabilized by weak inter-molecular C-H⋯O, C-H⋯N and C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21587996      PMCID: PMC3007023          DOI: 10.1107/S1600536810024025

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the applications of related azo compounds, see: Branger et al. (1997 ▶); Buchel et al. (1995 ▶); Gale et al. (1998 ▶); Ikeda & Tsutsumi (1995 ▶); Kang et al. (2000 ▶); Karcı et al. (2004 ▶); Kim et al. (1995 ▶); Kobrakov et al. (2004 ▶); Natansohn et al. (1992 ▶); Rochon et al. (1995 ▶). For related hydrazone structures, see: Çolak et al. (2010 ▶); Pavlovic et al. (2009 ▶); Seferoğlu et al. (2008 ▶); Seferoğlu et al. (2009 ▶); Wojciechowski & Szymezak (2007 ▶).

Experimental

Crystal data

C13H11N3O4 M = 273.25 Monoclinic, a = 9.7617 (2) Å b = 11.0023 (2) Å c = 11.4753 (3) Å β = 93.796 (1)° V = 1229.76 (5) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.46 × 0.43 × 0.29 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.950, T max = 0.968 11746 measured reflections 3098 independent reflections 2591 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.108 S = 1.04 3098 reflections 225 parameters All H-atom parameters refined Δρmax = 0.38 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAIn class="Chemical">NT program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810024025/ci5104sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024025/ci5104Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11N3O4F(000) = 568
Mr = 273.25Dx = 1.476 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4103 reflections
a = 9.7617 (2) Åθ = 2.6–28.4°
b = 11.0023 (2) ŵ = 0.11 mm1
c = 11.4753 (3) ÅT = 100 K
β = 93.796 (1)°Block, yellow
V = 1229.76 (5) Å30.46 × 0.43 × 0.29 mm
Z = 4
Bruker Kappa APEXII CCD area-detector diffractometer3098 independent reflections
Radiation source: fine-focus sealed tube2591 reflections with I > 2σ(I)
graphiteRint = 0.029
φ and ω scansθmax = 28.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −13→13
Tmin = 0.950, Tmax = 0.968k = −14→14
11746 measured reflectionsl = −15→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108All H-atom parameters refined
S = 1.04w = 1/[σ2(Fo2) + (0.0626P)2 + 0.2729P] where P = (Fo2 + 2Fc2)/3
3098 reflections(Δ/σ)max = 0.001
225 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.16363 (8)0.74524 (7)0.85585 (7)0.0172 (2)
O20.17892 (8)0.56739 (7)0.97179 (7)0.01470 (19)
O30.35656 (9)0.44276 (8)0.96914 (7)0.0187 (2)
O40.32521 (9)0.79574 (8)0.73794 (8)0.0249 (2)
N10.44403 (10)0.56888 (9)0.76510 (9)0.0165 (2)
N20.51381 (10)0.46953 (9)0.78943 (9)0.0159 (2)
H20.4942 (16)0.4243 (15)0.8538 (15)0.028 (4)*
N31.03756 (11)0.29578 (10)0.47015 (10)0.0232 (2)
C10.08704 (11)0.64589 (10)0.90176 (10)0.0143 (2)
C20.27845 (12)0.71950 (11)0.79881 (10)0.0172 (2)
C30.34022 (12)0.59901 (10)0.82608 (10)0.0155 (2)
C40.29477 (11)0.52812 (10)0.92521 (10)0.0144 (2)
C50.62374 (11)0.43844 (10)0.72180 (10)0.0148 (2)
C60.64458 (13)0.49922 (11)0.61746 (10)0.0173 (2)
H60.5852 (15)0.5636 (14)0.5904 (13)0.020 (4)*
C70.75216 (13)0.46401 (11)0.55177 (10)0.0175 (2)
H70.7668 (15)0.5059 (14)0.4788 (13)0.024 (4)*
C80.83788 (12)0.36875 (11)0.59035 (10)0.0155 (2)
C90.81720 (12)0.30898 (11)0.69557 (10)0.0161 (2)
H90.8752 (14)0.2457 (14)0.7224 (12)0.020 (4)*
C100.70992 (12)0.34407 (11)0.76131 (10)0.0159 (2)
H100.6926 (14)0.3023 (14)0.8350 (13)0.021 (4)*
C110.01442 (13)0.57371 (11)0.80405 (10)0.0178 (2)
H1110.0795 (15)0.5338 (14)0.7556 (13)0.022 (4)*
H112−0.0444 (15)0.5101 (14)0.8393 (13)0.023 (4)*
H113−0.0456 (15)0.6270 (15)0.7544 (14)0.026 (4)*
C12−0.00717 (13)0.70098 (11)0.98606 (10)0.0169 (2)
H1210.0494 (16)0.7364 (15)1.0534 (13)0.026 (4)*
H122−0.0616 (15)0.7636 (14)0.9446 (13)0.021 (4)*
H123−0.0673 (16)0.6388 (16)1.0133 (15)0.035 (4)*
C130.94875 (12)0.32918 (11)0.52248 (10)0.0177 (2)
U11U22U33U12U13U23
O10.0168 (4)0.0111 (4)0.0244 (4)0.0003 (3)0.0057 (3)0.0024 (3)
O20.0132 (4)0.0139 (4)0.0169 (4)0.0027 (3)0.0012 (3)0.0015 (3)
O30.0164 (4)0.0178 (4)0.0220 (4)0.0033 (3)0.0011 (3)0.0027 (3)
O40.0244 (5)0.0191 (5)0.0321 (5)0.0004 (4)0.0096 (4)0.0083 (4)
N10.0144 (5)0.0146 (5)0.0204 (5)−0.0002 (4)0.0009 (4)−0.0023 (4)
N20.0151 (5)0.0149 (5)0.0179 (5)0.0004 (4)0.0031 (4)−0.0005 (4)
N30.0227 (6)0.0233 (6)0.0244 (5)0.0003 (4)0.0076 (4)0.0001 (4)
C10.0135 (5)0.0111 (5)0.0182 (5)0.0005 (4)0.0010 (4)0.0024 (4)
C20.0152 (6)0.0159 (6)0.0208 (5)−0.0001 (4)0.0025 (4)−0.0003 (4)
C30.0143 (5)0.0140 (5)0.0184 (5)−0.0005 (4)0.0017 (4)−0.0006 (4)
C40.0127 (5)0.0135 (5)0.0170 (5)−0.0010 (4)0.0008 (4)−0.0027 (4)
C50.0119 (5)0.0143 (5)0.0182 (5)−0.0024 (4)0.0014 (4)−0.0037 (4)
C60.0178 (6)0.0137 (5)0.0205 (5)−0.0001 (4)0.0014 (4)0.0001 (4)
C70.0196 (6)0.0155 (5)0.0178 (5)−0.0026 (4)0.0039 (4)0.0004 (4)
C80.0134 (5)0.0155 (5)0.0179 (5)−0.0031 (4)0.0028 (4)−0.0022 (4)
C90.0137 (5)0.0160 (5)0.0185 (5)0.0003 (4)0.0001 (4)−0.0002 (4)
C100.0144 (5)0.0177 (5)0.0155 (5)−0.0026 (4)0.0010 (4)−0.0004 (4)
C110.0174 (6)0.0170 (6)0.0188 (5)0.0019 (5)−0.0009 (4)−0.0015 (4)
C120.0162 (6)0.0141 (5)0.0207 (5)0.0032 (4)0.0037 (4)0.0007 (4)
C130.0178 (6)0.0167 (6)0.0188 (5)−0.0029 (4)0.0024 (4)0.0006 (4)
O1—C11.4435 (13)C6—C71.3878 (16)
O1—C21.3645 (13)C6—H60.954 (15)
O2—C11.4493 (13)C7—C81.3949 (17)
O2—C41.3533 (13)C7—H70.974 (15)
O3—C41.2081 (14)C8—C91.4012 (16)
O4—C21.2009 (14)C8—C131.4418 (15)
N1—N21.3082 (14)C9—C101.3854 (15)
N1—C31.3116 (14)C9—H90.936 (15)
N2—C51.4075 (14)C10—H100.986 (15)
N2—H20.922 (17)C11—C11.5117 (16)
N3—C131.1473 (15)C11—H1110.976 (15)
C1—C121.5055 (15)C11—H1130.984 (16)
C2—C31.4812 (16)C11—H1121.007 (16)
C3—C41.4718 (15)C12—H1220.975 (15)
C5—C61.3981 (16)C12—H1210.999 (16)
C5—C101.3932 (17)C12—H1230.967 (17)
C2—O1—C1118.66 (9)C7—C6—H6119.7 (9)
C4—O2—C1118.29 (8)C6—C7—C8119.80 (11)
N2—N1—C3120.47 (10)C6—C7—H7119.6 (9)
N1—N2—C5119.38 (10)C8—C7—H7120.6 (9)
N1—N2—H2119.3 (10)C7—C8—C9120.56 (10)
C5—N2—H2121.1 (10)C7—C8—C13120.76 (10)
O1—C1—O2109.71 (9)C9—C8—C13118.68 (11)
O1—C1—C11110.85 (9)C8—C9—H9120.9 (9)
O1—C1—C12106.43 (9)C10—C9—C8119.72 (11)
O2—C1—C11109.92 (9)C10—C9—H9119.4 (9)
O2—C1—C12105.40 (9)C5—C10—H10119.5 (9)
C12—C1—C11114.31 (10)C9—C10—C5119.50 (10)
O1—C2—C3114.85 (10)C9—C10—H10121.0 (9)
O4—C2—O1119.33 (11)C1—C11—H111111.6 (9)
O4—C2—C3125.66 (11)C1—C11—H113110.4 (9)
N1—C3—C2115.57 (10)C1—C11—H112108.6 (9)
N1—C3—C4124.16 (11)H111—C11—H112109.0 (12)
C4—C3—C2119.88 (10)H111—C11—H113108.9 (13)
O2—C4—C3116.02 (10)H113—C11—H112108.3 (12)
O3—C4—O2119.38 (10)C1—C12—H121108.9 (9)
O3—C4—C3124.52 (10)C1—C12—H122107.9 (8)
C6—C5—N2121.03 (11)C1—C12—H123109.4 (10)
C10—C5—N2117.89 (10)H121—C12—H123110.0 (13)
C10—C5—C6121.08 (10)H122—C12—H121110.9 (13)
C5—C6—H6120.9 (9)H122—C12—H123109.6 (13)
C7—C6—C5119.34 (11)N3—C13—C8178.56 (13)
C2—O1—C1—O251.23 (12)O4—C2—C3—N1−9.81 (19)
C2—O1—C1—C11−70.35 (13)O4—C2—C3—C4163.35 (12)
C2—O1—C1—C12164.79 (10)N1—C3—C4—O2−174.73 (10)
C1—O1—C2—O4163.20 (11)N1—C3—C4—O38.59 (19)
C1—O1—C2—C3−21.07 (14)C2—C3—C4—O212.73 (16)
C4—O2—C1—O1−50.36 (12)C2—C3—C4—O3−163.95 (11)
C4—O2—C1—C12−164.59 (9)N2—C5—C6—C7−178.47 (10)
C4—O2—C1—C1171.77 (12)C10—C5—C6—C70.62 (18)
C1—O2—C4—O3−163.46 (10)N2—C5—C10—C9178.44 (10)
C1—O2—C4—C319.68 (14)C6—C5—C10—C9−0.67 (18)
C3—N1—N2—C5179.24 (10)C5—C6—C7—C80.05 (18)
N2—N1—C3—C2173.80 (10)C6—C7—C8—C9−0.65 (18)
N2—N1—C3—C40.97 (18)C6—C7—C8—C13178.87 (11)
N1—N2—C5—C6−11.37 (17)C7—C8—C9—C100.60 (18)
N1—N2—C5—C10169.52 (10)C13—C8—C9—C10−178.93 (11)
O1—C2—C3—N1174.77 (10)C8—C9—C10—C50.06 (17)
O1—C2—C3—C4−12.07 (16)
Cg1 is the centroid of the C5–C10 ring.
D—H···AD—HH···AD···AD—H···A
N2—H2···O30.92 (2)1.958 (16)2.6674 (13)132 (1)
C9—H9···N1i0.94 (2)2.624 (15)3.5320 (16)164 (1)
C10—H10···N3ii0.99 (2)2.485 (15)3.3876 (16)152 (1)
C12—H123···O2iii0.97 (2)2.527 (17)3.4454 (15)159 (1)
C12—H122···Cg1iv0.98 (2)2.491 (15)3.4575 (13)171 (1)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C5–C10 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O30.92 (2)1.958 (16)2.6674 (13)132 (1)
C9—H9⋯N1i0.94 (2)2.624 (15)3.5320 (16)164 (1)
C10—H10⋯N3ii0.99 (2)2.485 (15)3.3876 (16)152 (1)
C12—H123⋯O2iii0.97 (2)2.527 (17)3.4454 (15)159 (1)
C12—H122⋯Cg1iv0.98 (2)2.491 (15)3.4575 (13)171 (1)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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