Literature DB >> 21587958

2-O-tert-Butyl-dimethyl-silyl-4,6-O-ethyl-idene-myo-insitol 1,3,5-orthoformate.

Zhouqin Xu, Qiang Wang, Yanchun Sun.   

Abstract

In the title compound, C(15)H(26)O(6)Si, the dioxa six-membered ring bonded to the myo-inositol skeleton is in a boat conformation while the rest of the six-membered rings adopt chair conformations.

Entities:  

Year:  2010        PMID: 21587958      PMCID: PMC3006906          DOI: 10.1107/S1600536810023214

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

myo-Inositol orthoesters have been used extensively for the synthesis of phospho­inositols and their derivatives, see: Das & Shashidhar (1997 ▶); Sureshan et al. (2003 ▶); Potter & Lampe (1995 ▶). For the synthesis of the title compound, see: Li & Vasella (1993 ▶). For a related structure, see: Angyal (2000 ▶).

Experimental

Crystal data

C15H26O6Si M = 330.45 Orthorhombic, a = 12.0170 (4) Å b = 11.2808 (3) Å c = 25.6942 (8) Å V = 3483.14 (18) Å3 Z = 8 Mo Kα radiation μ = 0.16 mm−1 T = 297 K 0.22 × 0.21 × 0.17 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.966, T max = 0.973 55999 measured reflections 4060 independent reflections 2035 reflections with I > 2σ(I) R int = 0.102

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.149 S = 1.00 4060 reflections 205 parameters 18 restraints H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810023214/pv2294sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810023214/pv2294Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H26O6SiF(000) = 1424
Mr = 330.45Dx = 1.260 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3612 reflections
a = 12.0170 (4) Åθ = 2.3–18.5°
b = 11.2808 (3) ŵ = 0.16 mm1
c = 25.6942 (8) ÅT = 297 K
V = 3483.14 (18) Å3Block, colorless
Z = 80.22 × 0.21 × 0.17 mm
Bruker APEXII CCD area-detector diffractometer4060 independent reflections
Radiation source: fine-focus sealed tube2035 reflections with I > 2σ(I)
graphiteRint = 0.102
φ and ω scansθmax = 27.6°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −15→15
Tmin = 0.966, Tmax = 0.973k = −14→14
55999 measured reflectionsl = −33→32
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0588P)2 + 1.0231P] where P = (Fo2 + 2Fc2)/3
4060 reflections(Δ/σ)max = 0.001
205 parametersΔρmax = 0.24 e Å3
18 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.0701 (3)0.6537 (3)0.59939 (13)0.0839 (10)
H1A1.13520.69000.58480.126*
H1B1.01120.71100.60130.126*
H1C1.04730.58860.57780.126*
C21.0960 (2)0.6094 (2)0.65278 (12)0.0623 (8)
H21.12260.67460.67470.075*
C31.2002 (2)0.4541 (3)0.69423 (11)0.0606 (8)
H31.27940.45780.70320.073*
C41.0113 (2)0.4980 (2)0.72188 (10)0.0525 (6)
H40.96410.53270.74900.063*
C51.1318 (2)0.4988 (3)0.73907 (11)0.0615 (7)
H51.15450.57970.74810.074*
C61.1663 (2)0.3251 (2)0.68424 (10)0.0565 (7)
H61.21340.29130.65690.068*
C70.9784 (2)0.3686 (2)0.71229 (10)0.0475 (6)
H70.89890.36410.70410.057*
C81.0450 (2)0.3186 (2)0.66778 (10)0.0477 (6)
H81.03330.36680.63650.057*
C91.1140 (3)0.3057 (3)0.77096 (12)0.0663 (8)
H91.12550.25700.80210.080*
C101.0905 (3)0.2103 (4)0.55151 (14)0.1063 (13)
H10A1.08590.29520.55340.160*
H10B1.07100.18470.51710.160*
H10C1.16510.18560.55930.160*
C111.0206 (3)−0.0159 (3)0.60583 (12)0.0748 (9)
H11A1.0988−0.02860.61110.112*
H11B0.9973−0.05610.57480.112*
H11C0.9800−0.04650.63510.112*
C120.8465 (3)0.1719 (3)0.57919 (11)0.0673 (8)
C130.8201 (3)0.1084 (3)0.52793 (12)0.0919 (11)
H13A0.74290.11900.51960.138*
H13B0.83590.02540.53150.138*
H13C0.86510.14110.50060.138*
C140.7693 (3)0.1210 (4)0.62207 (15)0.1046 (12)
H14A0.78340.16120.65430.157*
H14B0.78370.03780.62620.157*
H14C0.69300.13240.61220.157*
C150.8231 (4)0.3032 (3)0.57262 (19)0.141 (2)
H15A0.74740.31410.56180.212*
H15B0.87220.33540.54680.212*
H15C0.83510.34310.60520.212*
O10.99714 (14)0.56100 (14)0.67385 (7)0.0554 (5)
O21.18006 (14)0.52151 (17)0.64779 (7)0.0621 (5)
O31.14699 (17)0.42203 (18)0.78300 (7)0.0728 (6)
O41.00096 (16)0.30181 (15)0.75876 (7)0.0584 (5)
O51.18069 (15)0.25908 (18)0.73137 (8)0.0689 (6)
O61.01461 (16)0.19916 (15)0.65769 (7)0.0610 (5)
Si10.99324 (6)0.14381 (6)0.59918 (3)0.0530 (2)
U11U22U33U12U13U23
C10.081 (2)0.074 (2)0.096 (3)0.0003 (17)0.0099 (19)0.032 (2)
C20.0583 (17)0.0506 (16)0.078 (2)−0.0097 (14)0.0084 (15)0.0002 (15)
C30.0401 (15)0.077 (2)0.0650 (18)−0.0088 (14)−0.0059 (13)0.0029 (16)
C40.0549 (16)0.0477 (14)0.0550 (17)−0.0024 (12)0.0088 (13)−0.0084 (13)
C50.0650 (18)0.0632 (18)0.0563 (18)−0.0168 (15)−0.0026 (14)−0.0060 (15)
C60.0492 (15)0.0673 (18)0.0531 (17)0.0093 (14)0.0019 (13)−0.0007 (14)
C70.0458 (15)0.0451 (14)0.0515 (16)−0.0045 (11)−0.0005 (12)−0.0021 (12)
C80.0507 (15)0.0432 (14)0.0491 (16)−0.0002 (11)−0.0029 (12)−0.0048 (12)
C90.072 (2)0.070 (2)0.0565 (18)−0.0023 (16)−0.0084 (16)0.0069 (16)
C100.121 (3)0.112 (3)0.086 (3)−0.040 (2)0.038 (2)−0.020 (2)
C110.093 (2)0.0545 (17)0.077 (2)0.0151 (16)−0.0045 (17)−0.0142 (15)
C120.0784 (19)0.0668 (17)0.0567 (17)0.0118 (15)−0.0106 (15)−0.0052 (14)
C130.104 (2)0.096 (2)0.076 (2)0.0068 (19)−0.0219 (18)−0.0122 (18)
C140.072 (2)0.142 (3)0.100 (2)0.008 (2)0.0024 (19)−0.005 (2)
C150.178 (5)0.084 (3)0.162 (4)0.060 (3)−0.091 (4)−0.026 (3)
O10.0522 (10)0.0465 (10)0.0677 (12)−0.0015 (8)0.0059 (9)0.0021 (9)
O20.0495 (11)0.0730 (12)0.0639 (12)−0.0066 (9)0.0089 (9)0.0042 (11)
O30.0812 (14)0.0844 (15)0.0527 (12)−0.0182 (11)−0.0141 (10)−0.0024 (11)
O40.0626 (12)0.0582 (11)0.0544 (12)−0.0061 (9)0.0037 (9)0.0049 (9)
O50.0637 (12)0.0759 (13)0.0671 (14)0.0167 (10)−0.0079 (10)0.0074 (11)
O60.0870 (14)0.0419 (10)0.0543 (11)−0.0050 (9)−0.0042 (10)−0.0059 (8)
Si10.0636 (5)0.0452 (4)0.0502 (5)−0.0004 (4)0.0056 (4)−0.0067 (3)
C1—C21.493 (4)C9—O51.397 (3)
C1—H1A0.9600C9—O31.406 (3)
C1—H1B0.9600C9—H90.9800
C1—H1C0.9600C10—Si11.852 (3)
C2—O11.415 (3)C10—H10A0.9600
C2—O21.421 (3)C10—H10B0.9600
C2—H20.9800C10—H10C0.9600
C3—O21.436 (3)C11—Si11.840 (3)
C3—C51.502 (4)C11—H11A0.9600
C3—C61.533 (4)C11—H11B0.9600
C3—H30.9800C11—H11C0.9600
C4—O11.434 (3)C12—C151.516 (4)
C4—C51.513 (4)C12—C131.532 (4)
C4—C71.533 (3)C12—C141.550 (5)
C4—H40.9800C12—Si11.864 (3)
C5—O31.434 (3)C13—H13A0.9600
C5—H50.9800C13—H13B0.9600
C6—O51.432 (3)C13—H13C0.9600
C6—C81.520 (3)C14—H14A0.9600
C6—H60.9800C14—H14B0.9600
C7—O41.437 (3)C14—H14C0.9600
C7—C81.505 (3)C15—H15A0.9600
C7—H70.9800C15—H15B0.9600
C8—O61.420 (3)C15—H15C0.9600
C8—H80.9800O6—Si11.6480 (18)
C9—O41.395 (3)
C2—C1—H1A109.5O4—C9—H9107.7
C2—C1—H1B109.5O5—C9—H9107.7
H1A—C1—H1B109.5O3—C9—H9107.7
C2—C1—H1C109.5Si1—C10—H10A109.5
H1A—C1—H1C109.5Si1—C10—H10B109.5
H1B—C1—H1C109.5H10A—C10—H10B109.5
O1—C2—O2111.3 (2)Si1—C10—H10C109.5
O1—C2—C1107.8 (2)H10A—C10—H10C109.5
O2—C2—C1107.4 (2)H10B—C10—H10C109.5
O1—C2—H2110.1Si1—C11—H11A109.5
O2—C2—H2110.1Si1—C11—H11B109.5
C1—C2—H2110.1H11A—C11—H11B109.5
O2—C3—C5111.6 (2)Si1—C11—H11C109.5
O2—C3—C6108.6 (2)H11A—C11—H11C109.5
C5—C3—C6107.5 (2)H11B—C11—H11C109.5
O2—C3—H3109.7C15—C12—C13108.8 (3)
C5—C3—H3109.7C15—C12—C14109.3 (3)
C6—C3—H3109.7C13—C12—C14108.3 (3)
O1—C4—C5111.2 (2)C15—C12—Si1111.8 (3)
O1—C4—C7107.6 (2)C13—C12—Si1110.7 (2)
C5—C4—C7107.4 (2)C14—C12—Si1107.9 (2)
O1—C4—H4110.2C12—C13—H13A109.5
C5—C4—H4110.2C12—C13—H13B109.5
C7—C4—H4110.2H13A—C13—H13B109.5
O3—C5—C3109.3 (2)C12—C13—H13C109.5
O3—C5—C4110.4 (2)H13A—C13—H13C109.5
C3—C5—C4107.3 (2)H13B—C13—H13C109.5
O3—C5—H5109.9C12—C14—H14A109.5
C3—C5—H5109.9C12—C14—H14B109.5
C4—C5—H5109.9H14A—C14—H14B109.5
O5—C6—C8109.0 (2)C12—C14—H14C109.5
O5—C6—C3108.7 (2)H14A—C14—H14C109.5
C8—C6—C3110.3 (2)H14B—C14—H14C109.5
O5—C6—H6109.6C12—C15—H15A109.5
C8—C6—H6109.6C12—C15—H15B109.5
C3—C6—H6109.6H15A—C15—H15B109.5
O4—C7—C8109.6 (2)C12—C15—H15C109.5
O4—C7—C4108.5 (2)H15A—C15—H15C109.5
C8—C7—C4109.9 (2)H15B—C15—H15C109.5
O4—C7—H7109.6C2—O1—C4114.9 (2)
C8—C7—H7109.6C2—O2—C3114.5 (2)
C4—C7—H7109.6C9—O3—C5110.8 (2)
O6—C8—C7110.9 (2)C9—O4—C7110.8 (2)
O6—C8—C6110.0 (2)C9—O5—C6110.5 (2)
C7—C8—C6106.3 (2)C8—O6—Si1124.48 (16)
O6—C8—H8109.8O6—Si1—C11104.99 (12)
C7—C8—H8109.8O6—Si1—C10110.57 (14)
C6—C8—H8109.8C11—Si1—C10110.20 (17)
O4—C9—O5112.5 (2)O6—Si1—C12109.54 (12)
O4—C9—O3110.7 (2)C11—Si1—C12111.17 (15)
O5—C9—O3110.5 (2)C10—Si1—C12110.25 (17)
O2—C3—C5—O3174.7 (2)C1—C2—O2—C3−169.0 (2)
C6—C3—C5—O355.7 (3)C5—C3—O2—C2−4.0 (3)
O2—C3—C5—C454.9 (3)C6—C3—O2—C2114.4 (2)
C6—C3—C5—C4−64.1 (3)O4—C9—O3—C5−62.2 (3)
O1—C4—C5—O3−172.03 (19)O5—C9—O3—C563.1 (3)
C7—C4—C5—O3−54.5 (3)C3—C5—O3—C9−59.7 (3)
O1—C4—C5—C3−52.9 (3)C4—C5—O3—C958.1 (3)
C7—C4—C5—C364.6 (3)O5—C9—O4—C7−59.7 (3)
O2—C3—C6—O5−176.93 (19)O3—C9—O4—C764.4 (3)
C5—C3—C6—O5−56.1 (3)C8—C7—O4—C959.0 (3)
O2—C3—C6—C8−57.5 (3)C4—C7—O4—C9−61.0 (3)
C5—C3—C6—C863.4 (3)O4—C9—O5—C660.5 (3)
O1—C4—C7—O4175.20 (18)O3—C9—O5—C6−63.7 (3)
C5—C4—C7—O455.3 (3)C8—C6—O5—C9−59.9 (3)
O1—C4—C7—C855.4 (3)C3—C6—O5—C960.3 (3)
C5—C4—C7—C8−64.5 (3)C7—C8—O6—Si1135.56 (19)
O4—C7—C8—O661.8 (3)C6—C8—O6—Si1−107.1 (2)
C4—C7—C8—O6−179.1 (2)C8—O6—Si1—C11154.8 (2)
O4—C7—C8—C6−57.9 (3)C8—O6—Si1—C1035.9 (2)
C4—C7—C8—C661.2 (3)C8—O6—Si1—C12−85.8 (2)
O5—C6—C8—O6−61.8 (3)C15—C12—Si1—O665.4 (3)
C3—C6—C8—O6179.0 (2)C13—C12—Si1—O6−173.1 (2)
O5—C6—C8—C758.4 (3)C14—C12—Si1—O6−54.8 (2)
C3—C6—C8—C7−60.8 (3)C15—C12—Si1—C11−179.0 (3)
O2—C2—O1—C453.3 (3)C13—C12—Si1—C11−57.5 (3)
C1—C2—O1—C4170.8 (2)C14—C12—Si1—C1160.8 (3)
C5—C4—O1—C20.2 (3)C15—C12—Si1—C10−56.5 (3)
C7—C4—O1—C2−117.2 (2)C13—C12—Si1—C1065.0 (3)
O1—C2—O2—C3−51.2 (3)C14—C12—Si1—C10−176.7 (2)
  3 in total

1.  myo-Inositol 4,6-carbonate: an easily prepared small molecule with three syn-axial hydroxyl groups.

Authors:  S J Angyal
Journal:  Carbohydr Res       Date:  2000-05-05       Impact factor: 2.104

2.  Regioselective protection and deprotection of inositol hydroxyl groups.

Authors:  Kana M Sureshan; Mysore S Shashidhar; Thoniyot Praveen; Tanya Das
Journal:  Chem Rev       Date:  2003-11       Impact factor: 60.622

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total

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